←Back to structures
BLRF2
Euk-VirVombatid_gammaherpesvirus_1
BLRF2__YP_010087421__Vombatid_gammaherpesvirus_1__2052651
Identity
- Accession:
- YP_010087421 ↗
- Protein ID:
- BLRF2
- Kingdom:
- euk
Quality
74.3
mean pLDDT
Taxonomy
Heunggongvirae›
Peploviricota›
Herviviricetes›
Herpesvirales›
Orthoherpesviridae›
Manticavirus›
Vombatid_gammaherpesvirus_1
TaxID: 2052651
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 49-100
Domain cluster:
rep: ORF52__YP_009173931__Felis_catus_gammaherpesvirus_1__1452540__D51-103
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF05812.18 best | Herpes_BLRF2 | 31.1 | 3.20e-07 | 100.0% | 42.9% |
CATH (13)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2oa5A01 | 1.10.3390.10 | Mainly Alpha › Orthogonal Bundle › YejL-like › YejL-like | 0.95 | 81.0 | 6.92e-01 | 90.4% | 61.0% |
| 3r6nA02 | 1.20.58.1060 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.74 | 59.0 | 4.16e-01 | 86.5% | 42.6% |
| 2ql2C00 | 4.10.280.10 | Few Secondary Structures › Irregular › MYOD Basic-Helix-Loop-Helix Domain, subunit B › Helix-loop-helix DNA-binding domain | 0.74 | 59.0 | 5.68e-01 | 100.0% | 75.9% |
| 3e3vA03 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.71 | 48.0 | 4.72e-01 | 71.2% | 73.2% |
| 2oceA01 | 1.10.10.650 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › RuvA domain 2-like | 0.70 | 61.0 | 4.75e-01 | 98.1% | 79.6% |
| 3ppuB02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.69 | 48.0 | 3.68e-01 | 73.1% | 33.6% |
| 3owaB04 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.65 | 58.0 | 4.07e-01 | 98.1% | 72.6% |
| 4h63H01 | 1.20.58.1710 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.63 | 56.0 | 5.04e-01 | 100.0% | 73.6% |
| 3sqiA01 | 1.10.150.540 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › | 0.60 | 47.0 | 3.74e-01 | 84.6% | 46.5% |
| 5pg1A00 | 1.20.920.10 | Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like | 0.59 | 47.0 | 3.75e-01 | 90.4% | 93.0% |
| 1k32A03 | 3.30.750.44 | Alpha Beta › 2-Layer Sandwich › Transcription Regulator spoIIAA › | 0.59 | 40.0 | 3.74e-01 | 73.1% | 54.2% |
| 1m0wA03 | 1.10.1080.10 | Mainly Alpha › Orthogonal Bundle › Glutathione Synthetase; Chain A, domain 3 › Glutathione Synthetase; Chain A, domain 3 | 0.56 | 40.0 | 3.39e-01 | 76.9% | 81.2% |
| 1hwyA01 | 1.10.287.140 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.51 | 38.0 | 3.84e-01 | 88.5% | 94.1% |
ECOD (5)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 7704 | 4302.1.1.2 ↗ | a+b duplicates or obligate multimers › BLRF2-like › BLRF2-like › BLRF2-like › Herpes_BLRF2 | 0.94 | 87.0 | 7.19e-01 | 100.0% | 59.8% |
| 3613865 | 304.4.1.0 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel | 0.68 | 63.0 | 4.32e-01 | 100.0% | 53.9% |
| 4031490 | 632.2.1.5 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Bacterial immunoglobulin/albumin-binding domains › Bacterial immunoglobulin/albumin-binding domains › DUF1542 | 0.66 | 53.0 | 4.71e-01 | 96.2% | 61.3% |
| 3545138 | 3990.1.1.3 ↗ | few secondary structure elements › Zinc finger domain in TOPLESS related protein 2 (TPR2) › Zinc finger domain in TOPLESS related protein 2 (TPR2) › Zinc finger domain in TOPLESS related protein 2 (TPR2) › WDR47_COR | 0.65 | 49.0 | 4.39e-01 | 78.8% | 94.3% |
| 5081021 | 5067.1.1.0 ↗ | alpha bundles › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain | 0.65 | 55.0 | 4.03e-01 | 98.1% | 38.6% |