←Back to structures
BML_08012017_9_75m_scaffold_2_prodigal-single.1__X__X__00064
Bact-VirBML_08012017_9_75m_scaffold_2_prodigal-single.1__X__X__00064
Identity
- Kingdom:
- phage
Quality
73.2
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 14-21_159-203
D2
medium
residues 107-155
Domain cluster:
representative
CATH (13)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5xfoA02 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.70 | 42.0 | 4.03e-01 | 81.6% | 51.8% |
| 2f9iD00 | 3.90.226.10 | Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › 2-enoyl-CoA Hydratase; Chain A, domain 1 | 0.65 | 54.0 | 3.40e-01 | 93.9% | 31.0% |
| 3purA01 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.64 | 48.0 | 4.17e-01 | 81.6% | 64.9% |
| 3axsA01 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.62 | 45.0 | 2.76e-01 | 83.7% | 11.5% |
| 4ccgY00 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.62 | 48.0 | 4.38e-01 | 85.7% | 80.6% |
| 1mi8A00 | 2.170.16.10 | Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain | 0.61 | 49.0 | 3.54e-01 | 89.8% | 97.9% |
| 7v8fB01 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.58 | 43.0 | 3.62e-01 | 81.6% | 71.7% |
| 2hjhA02 | 3.30.1600.10 | Alpha Beta › 2-Layer Sandwich › SIR2/SIRT2 'Small Domain' › SIR2/SIRT2 'Small Domain' | 0.58 | 43.0 | 3.32e-01 | 83.7% | 58.2% |
| 2imzA00 | 2.170.16.10 | Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain | 0.57 | 49.0 | 3.55e-01 | 100.0% | 59.9% |
| 1m2vB03 | 2.30.30.380 | Mainly Beta › Roll › SH3 type barrels. › Zn-finger domain of Sec23/24 | 0.56 | 45.0 | 4.23e-01 | 89.8% | 72.6% |
| 5dkaA00 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.54 | 36.0 | 3.03e-01 | 71.4% | 37.5% |
| 3h4oA00 | 3.40.109.10 | Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase | 0.53 | 41.0 | 3.03e-01 | 98.0% | 50.9% |
| 2xzm901 | 6.20.50.180 | Special › Other non-globular › N-terminal domain of TfIIb › | 0.50 | 38.0 | 3.45e-01 | 85.7% | 69.4% |
ECOD (56)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4403519 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.77 | 51.0 | 3.48e-01 | 73.5% | 20.0% |
| 5080684 | 101.1.2.31 ↗ | alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha | 0.77 | 52.0 | 3.57e-01 | 73.5% | 21.9% |
| 4522265 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.77 | 51.0 | 5.52e-01 | 73.5% | 85.0% |
| 4221024 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.76 | 52.0 | 3.39e-01 | 75.5% | 17.1% |
| 5055462 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.76 | 52.0 | 5.64e-01 | 71.4% | 92.5% |
| 4456198 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.76 | 52.0 | 3.44e-01 | 75.5% | 18.9% |
| 4338085 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.76 | 52.0 | 5.38e-01 | 75.5% | 77.8% |
| 4546356 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.75 | 50.0 | 4.16e-01 | 73.5% | 40.0% |
| 4344487 | 375.1.1.179 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIE_alpha | 0.75 | 50.0 | 3.41e-01 | 73.5% | 20.6% |
| 4478999 | 101.1.2.31 ↗ | alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha | 0.74 | 51.0 | 3.46e-01 | 75.5% | 20.2% |
| 4466102 | 101.1.2.31 ↗ | alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha | 0.74 | 49.0 | 3.38e-01 | 73.5% | 20.0% |
| 4507638 | 101.1.2.31 ↗ | alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha | 0.74 | 49.0 | 3.40e-01 | 73.5% | 20.6% |
| 4645846 | 375.1.1.179 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIE_alpha | 0.74 | 50.0 | 3.38e-01 | 73.5% | 20.0% |
| 4329890 | 101.1.2.31 ↗ | alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha | 0.74 | 51.0 | 3.57e-01 | 75.5% | 23.3% |
| 4222282 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.74 | 50.0 | 4.62e-01 | 75.5% | 53.8% |
| 4306889 | 375.1.1.241 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Zn_ribbon_ACC | 0.74 | 49.0 | 5.45e-01 | 77.6% | 97.1% |
| 4527101 | 101.1.2.31 ↗ | alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha | 0.73 | 49.0 | 3.40e-01 | 73.5% | 21.3% |
| 4246886 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.73 | 49.0 | 4.81e-01 | 75.5% | 63.6% |
| 3604213 | 375.1.1.37 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TF_Zn_Ribbon | 0.72 | 49.0 | 5.27e-01 | 75.5% | 87.5% |
| 5042462 | 101.1.2.31 ↗ | alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha | 0.72 | 49.0 | 3.37e-01 | 75.5% | 21.2% |
| 4467359 | 101.1.2.31 ↗ | alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha | 0.72 | 50.0 | 3.40e-01 | 79.6% | 21.2% |
| 5070884 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.72 | 49.0 | 4.37e-01 | 75.5% | 50.0% |
| 4241167 | 375.1.1.179 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIE_alpha | 0.72 | 51.0 | 3.48e-01 | 81.6% | 21.8% |
| 3242125 | 192.29.1.0 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) | 0.70 | 55.0 | 3.47e-01 | 87.8% | 16.9% |
| 3473891 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.70 | 48.0 | 4.40e-01 | 73.5% | 83.1% |
| 4953034 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.70 | 46.0 | 4.80e-01 | 73.5% | 75.6% |
| 4995952 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.69 | 47.0 | 3.95e-01 | 73.5% | 41.2% |
| 3486337 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.68 | 49.0 | 4.74e-01 | 81.6% | 69.1% |
| 3995440 | 375.1.1.211 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Ima1_N | 0.67 | 46.0 | 5.16e-01 | 77.6% | 100.0% |
| 5000735 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.67 | 48.0 | 3.32e-01 | 81.6% | 21.7% |
| 3862499 | 192.29.1.117 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › Ima1_N | 0.67 | 49.0 | 4.71e-01 | 83.7% | 69.1% |
| 4469728 | 2486.1.1.3 ↗ | a/b three-layered sandwiches › ClpP/crotonase › ClpP/crotonase › ClpP/crotonase › Carboxyl_trans | 0.65 | 54.0 | 3.42e-01 | 93.9% | 32.3% |
| 5077820 | 376.1.2.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain | 0.65 | 45.0 | 3.93e-01 | 73.5% | 61.3% |
| 4651118 | 376.1.3.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger | 0.64 | 46.0 | 3.59e-01 | 77.6% | 76.4% |
| 3436005 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.64 | 44.0 | 4.01e-01 | 79.6% | 53.8% |
| 3601198 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.64 | 44.0 | 3.52e-01 | 73.5% | 49.0% |
| 3629733 | 375.1.1.211 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Ima1_N | 0.63 | 45.0 | 4.42e-01 | 81.6% | 69.1% |
| 4325001 | 2486.1.1.3 ↗ | a/b three-layered sandwiches › ClpP/crotonase › ClpP/crotonase › ClpP/crotonase › Carboxyl_trans | 0.63 | 54.0 | 3.33e-01 | 98.0% | 27.5% |
| 3725941 | 376.1.3.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger | 0.63 | 40.0 | 4.04e-01 | 75.5% | 64.0% |
| 3687989 | 376.1.1.1 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 | 0.63 | 41.0 | 4.56e-01 | 77.6% | 100.0% |
| 4577135 | 375.10.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Zinc finger domain of DNA polymerase-alpha › Zinc finger domain of DNA polymerase-alpha | 0.62 | 50.0 | 4.37e-01 | 93.9% | 80.0% |
| 3476530 | 376.1.1.8 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › U-box | 0.61 | 44.0 | 4.08e-01 | 79.6% | 64.6% |
| 5050229 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.61 | 44.0 | 3.93e-01 | 79.6% | 54.3% |
| 3602705 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.60 | 45.0 | 3.22e-01 | 85.7% | 26.5% |
| 4965882 | 375.1.1.344 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › DUF7836 | 0.59 | 44.0 | 4.35e-01 | 83.7% | 96.3% |
| 4284753 | 2486.1.1.0 ↗ | a/b three-layered sandwiches › ClpP/crotonase › ClpP/crotonase › ClpP/crotonase | 0.59 | 51.0 | 3.20e-01 | 100.0% | 29.6% |
| 4933539 | 2484.1.1.302 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Cas12f1-like_TNB | 0.59 | 43.0 | 2.81e-01 | 77.6% | 17.2% |
| 3796016 | 376.1.3.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger | 0.58 | 37.0 | 3.58e-01 | 79.6% | 58.2% |
| 3888168 | 389.3.1.0 ↗ | few secondary structure elements › EGF-like › LDL receptor-like module › LDL receptor-like module | 0.58 | 43.0 | 4.49e-01 | 95.9% | 93.3% |
| 3638415 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.57 | 40.0 | 3.37e-01 | 83.7% | 66.7% |
| 3481757 | 376.1.1.22 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_3 | 0.55 | 37.0 | 3.75e-01 | 73.5% | 74.0% |
| 3709973 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.54 | 40.0 | 4.26e-01 | 83.7% | 100.0% |
| 3399106 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.53 | 40.0 | 4.06e-01 | 93.9% | 98.0% |
| 5062314 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.52 | 37.0 | 2.71e-01 | 77.6% | 37.3% |
| 3219652 | 376.1.3.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger | 0.51 | 38.0 | 2.82e-01 | 91.8% | 57.6% |
| 3710951 | 386.1.1.1 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2 | 0.51 | 41.0 | 3.43e-01 | 100.0% | 80.0% |