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BML_08012017_9_75m_scaffold_2_prodigal-single.1__X__X__00095
Bact-VirBML_08012017_9_75m_scaffold_2_prodigal-single.1__X__X__00095
Identity
- Kingdom:
- phage
Quality
94.8
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-77
Domain cluster:
representative
CATH (15)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3igfA02 | 2.60.40.790 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.61 | 45.0 | 4.55e-01 | 100.0% | 82.4% |
| 2z0lA00 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.58 | 49.0 | 3.42e-01 | 100.0% | 36.2% |
| 1itvA00 | 2.110.10.10 | Mainly Beta › 4 Propeller › Hemopexin › Hemopexin-like domain | 0.57 | 42.0 | 3.11e-01 | 78.9% | 96.4% |
| 1x9yA01 | 3.10.500.10 | Alpha Beta › Roll › prostaphopain b, domain 1 › Staphopain proregion domain | 0.55 | 38.0 | 2.99e-01 | 72.4% | 42.4% |
| 3ifvC00 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.53 | 45.0 | 3.32e-01 | 100.0% | 35.8% |
| 1vpkA01 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.53 | 45.0 | 3.96e-01 | 100.0% | 75.0% |
| 4chjA00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.53 | 43.0 | 3.68e-01 | 90.8% | 81.5% |
| 2mtzA02 | 2.40.440.10 | Mainly Beta › Beta Barrel › L,D-transpeptidase catalytic domain-like › L,D-transpeptidase catalytic domain-like | 0.52 | 42.0 | 3.73e-01 | 93.4% | 92.4% |
| 1twfI01 | 2.20.25.10 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › | 0.52 | 31.0 | 3.70e-01 | 100.0% | 97.8% |
| 2nutA02 | 2.30.30.380 | Mainly Beta › Roll › SH3 type barrels. › Zn-finger domain of Sec23/24 | 0.52 | 38.0 | 4.07e-01 | 98.7% | 96.7% |
| 3kg5A00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 36.0 | 3.28e-01 | 72.4% | 78.6% |
| 2ewvA01 | 3.30.450.90 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › | 0.51 | 42.0 | 3.82e-01 | 90.8% | 78.4% |
| 6v55A02 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.51 | 40.0 | 3.15e-01 | 92.1% | 48.2% |
| 2dmoA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.51 | 33.0 | 3.50e-01 | 82.9% | 75.0% |
| 3r4qA01 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.50 | 32.0 | 2.79e-01 | 73.7% | 37.9% |
ECOD (19)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4998173 | 319.1.1.4 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › ArsA_HSP20 | 0.66 | 48.0 | 4.88e-01 | 100.0% | 80.0% |
| 5047010 | 2008.1.1.63 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › MvaI_BcnI | 0.64 | 55.0 | 4.06e-01 | 100.0% | 66.7% |
| 3775796 | 5.1.4.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 | 0.61 | 42.0 | 3.20e-01 | 77.6% | 30.0% |
| 3892746 | 5.1.4.13 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › FG-GAP | 0.61 | 44.0 | 2.81e-01 | 77.6% | 27.9% |
| 3996732 | 5.1.5.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed | 0.59 | 40.0 | 2.73e-01 | 73.7% | 18.3% |
| 3910728 | 319.1.1.3 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › CS | 0.58 | 45.0 | 3.70e-01 | 100.0% | 43.2% |
| 3567079 | 5.1.2.2 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › WD40 | 0.57 | 39.0 | 3.00e-01 | 77.6% | 27.3% |
| 3416239 | 319.1.1.0 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones | 0.57 | 41.0 | 4.08e-01 | 100.0% | 72.3% |
| 4319253 | 4263.2.1.1 ↗ | a+b two layers › TTHA1528-like › FtsH Periplasmic Domain › FtsH Periplasmic Domain › FtsH_ext | 0.56 | 38.0 | 4.10e-01 | 80.3% | 83.1% |
| 5066808 | 274.1.1.0 ↗ | a+b two layers › Pili subunits › Pili subunits › Pili subunits | 0.54 | 42.0 | 3.64e-01 | 85.5% | 73.2% |
| 3784839 | 319.1.1.0 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones | 0.54 | 42.0 | 3.93e-01 | 88.2% | 82.0% |
| 3715232 | 10.1.1.56 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › TS_C | 0.53 | 41.0 | 3.31e-01 | 86.8% | 62.5% |
| 5041846 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.53 | 27.0 | 3.40e-01 | 75.0% | 92.3% |
| 4980359 | 227.1.1.1 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N | 0.53 | 44.0 | 3.94e-01 | 100.0% | 74.2% |
| 5032518 | 10.1.1.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases | 0.52 | 41.0 | 3.89e-01 | 90.8% | 89.5% |
| 3577264 | 207.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats | 0.52 | 36.0 | 2.86e-01 | 72.4% | 48.0% |
| 3175415 | 211.1.1.55 ↗ | a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › PF29700 | 0.51 | 34.0 | 3.63e-01 | 94.7% | 86.7% |
| 3610662 | 5.1.5.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed | 0.51 | 37.0 | 2.62e-01 | 80.3% | 71.7% |
| 3385696 | 854.1.1.0 ↗ | extended segments › Outer membrane virulence protein yopE › Outer membrane virulence protein yopE › Outer membrane virulence protein yopE | 0.51 | 36.0 | 3.66e-01 | 78.9% | 94.9% |