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BML_08012017_9_75m_scaffold_2_prodigal-single.1__X__X__00142
Bact-VirBML_08012017_9_75m_scaffold_2_prodigal-single.1__X__X__00142
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-38_131-153
Domain cluster:
representative
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3nziA01 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.64 | 42.0 | 3.55e-01 | 98.4% | 39.6% |
| 3mp6A05 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.51 | 33.0 | 3.27e-01 | 95.1% | 63.5% |
| 3uxfA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.51 | 40.0 | 3.20e-01 | 93.4% | 60.1% |
| 6uqjA02 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.50 | 41.0 | 2.57e-01 | 91.8% | 86.1% |
ECOD (5)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3189419 | 267.1.1.0 ↗ | a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain | 0.66 | 51.0 | 3.30e-01 | 83.6% | 71.8% |
| 4490625 | 221.4.1.0 ↗ | a+b two layers › beta-Grasp › Nudix › Nudix | 0.55 | 46.0 | 3.28e-01 | 100.0% | 58.6% |
| 3936120 | 2008.1.1.27 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › RAI1 | 0.54 | 36.0 | 2.29e-01 | 70.5% | 79.7% |
| 4175934 | 304.11.1.2 ↗ | a+b two layers › Alpha-beta plaits › Probable ACP-binding domain of malonyl-CoA ACP transacylase › Probable ACP-binding domain of malonyl-CoA ACP transacylase › SAT | 0.54 | 37.0 | 3.32e-01 | 100.0% | 51.8% |
| 3275069 | 221.4.1.1 ↗ | a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX | 0.51 | 41.0 | 3.24e-01 | 100.0% | 75.6% |
D2
medium
residues 39-130
Domain cluster:
representative
CATH (52)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2hhiA01 | 3.30.565.40 | Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Fervidobacterium nodosum Rt17-B1 like | 0.71 | 49.0 | 4.48e-01 | 70.7% | 88.1% |
| 5w8mA00 | 3.60.21.10 | Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases | 0.67 | 46.0 | 3.56e-01 | 70.7% | 98.5% |
| 4uv3E01 | 3.40.50.10610 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ABC-type transport auxiliary lipoprotein component | 0.65 | 46.0 | 3.55e-01 | 72.8% | 64.5% |
| 1qj8A00 | 2.40.160.20 | Mainly Beta › Beta Barrel › Porin › | 0.63 | 46.0 | 3.92e-01 | 77.2% | 54.1% |
| 3dbxA01 | 3.30.500.10 | Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like | 0.61 | 47.0 | 3.80e-01 | 82.6% | 89.4% |
| 4kwyA00 | 3.30.160.150 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Lipoprotein like domain | 0.61 | 42.0 | 3.77e-01 | 72.8% | 75.9% |
| 4kghA00 | 3.15.10.10 | Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › Bactericidal permeability-increasing protein; domain 1 | 0.61 | 54.0 | 4.23e-01 | 97.8% | 65.8% |
| 1m6kA00 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.60 | 43.0 | 3.15e-01 | 73.9% | 76.8% |
| 1sr9A02 | 3.30.160.270 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Alpha-isopropylmalate synthase LeuA, regulatory domain | 0.60 | 42.0 | 3.49e-01 | 73.9% | 82.3% |
| 4iiqC02 | 3.30.500.10 | Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like | 0.60 | 45.0 | 3.72e-01 | 82.6% | 88.2% |
| 4akrA02 | 3.90.1150.210 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › F-actin capping protein, beta subunit | 0.59 | 41.0 | 3.54e-01 | 72.8% | 46.3% |
| 4kz1A00 | 3.10.450.230 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › VirB8 protein | 0.59 | 48.0 | 4.23e-01 | 88.0% | 95.6% |
| 3aa0B02 | 3.90.1150.210 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › F-actin capping protein, beta subunit | 0.59 | 41.0 | 3.47e-01 | 72.8% | 47.1% |
| 4z9cB00 | 2.40.50.110 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.59 | 44.0 | 4.14e-01 | 80.4% | 79.1% |
| 2q03A00 | 2.40.350.10 | Mainly Beta › Beta Barrel › AOC barrel-like › SO1590-like | 0.58 | 43.0 | 3.90e-01 | 97.8% | 54.9% |
| 5byuA00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.58 | 40.0 | 3.60e-01 | 70.7% | 86.7% |
| 1jkgA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.58 | 49.0 | 4.30e-01 | 92.4% | 88.5% |
| 3kenA00 | 3.40.850.10 | Alpha Beta › 3-Layer(aba) Sandwich › Kinesin › Kinesin motor domain | 0.58 | 42.0 | 2.87e-01 | 76.1% | 64.9% |
| 3soyA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.58 | 46.0 | 4.07e-01 | 89.1% | 87.3% |
| 2bmoB00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.57 | 50.0 | 3.97e-01 | 97.8% | 84.5% |
| 2cwzA00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.57 | 40.0 | 3.54e-01 | 73.9% | 89.8% |
| 3b8lA01 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.57 | 48.0 | 4.24e-01 | 95.7% | 88.7% |
| 5ig0A00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.57 | 50.0 | 4.40e-01 | 95.7% | 95.4% |
| 3ebyA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.56 | 47.0 | 3.98e-01 | 92.4% | 88.2% |
| 2ckfB00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.56 | 47.0 | 3.90e-01 | 94.6% | 91.2% |
| 3qooA00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.56 | 39.0 | 3.48e-01 | 73.9% | 92.5% |
| 2b1xB00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.55 | 47.0 | 3.94e-01 | 95.7% | 88.6% |
| 1uliB00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.55 | 49.0 | 3.99e-01 | 100.0% | 92.7% |
| 3qvsA02 | 3.30.360.10 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 | 0.55 | 38.0 | 3.76e-01 | 71.7% | 98.0% |
| 4gb5A00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.55 | 47.0 | 4.04e-01 | 95.7% | 89.2% |
| 1a6zA01 | 3.30.500.10 | Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like | 0.55 | 46.0 | 3.81e-01 | 95.7% | 84.4% |
| 2f86B00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.55 | 44.0 | 3.97e-01 | 88.0% | 91.5% |
| 2yh6D00 | 3.30.530.50 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › | 0.55 | 45.0 | 4.27e-01 | 100.0% | 77.3% |
| 1vl4A01 | 3.30.2290.10 | Alpha Beta › 2-Layer Sandwich › PmbA/TldD fold › PmbA/TldD superfamily | 0.54 | 38.0 | 3.01e-01 | 72.8% | 79.5% |
| 3ebtA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.54 | 43.0 | 3.90e-01 | 88.0% | 85.5% |
| 1q42A00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.54 | 45.0 | 3.87e-01 | 95.7% | 96.2% |
| 1bxwA00 | 2.40.160.20 | Mainly Beta › Beta Barrel › Porin › | 0.54 | 47.0 | 3.83e-01 | 96.7% | 62.2% |
| 3robA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.54 | 46.0 | 4.11e-01 | 95.7% | 91.6% |
| 3ff0A01 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.53 | 44.0 | 3.87e-01 | 92.4% | 84.4% |
| 3er7B00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.53 | 44.0 | 4.02e-01 | 92.4% | 95.1% |
| 3ejvA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.53 | 44.0 | 3.73e-01 | 92.4% | 93.7% |
| 2chcC00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.53 | 42.0 | 3.61e-01 | 89.1% | 73.6% |
| 3hx8A00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.53 | 45.0 | 4.06e-01 | 95.7% | 93.8% |
| 1pmiA03 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.53 | 36.0 | 3.33e-01 | 70.7% | 90.8% |
| 3cnxA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.53 | 45.0 | 3.98e-01 | 95.7% | 96.4% |
| 6njeA00 | 3.40.850.10 | Alpha Beta › 3-Layer(aba) Sandwich › Kinesin › Kinesin motor domain | 0.53 | 41.0 | 2.93e-01 | 84.8% | 54.5% |
| 2vsmA00 | 2.120.10.10 | Mainly Beta › 6 Propeller › Neuraminidase › | 0.53 | 46.0 | 2.98e-01 | 95.7% | 53.3% |
| 2gtlM02 | 2.40.128.620 | Mainly Beta › Beta Barrel › Lipocalin › | 0.52 | 41.0 | 3.50e-01 | 90.2% | 48.8% |
| 4gf4A00 | 2.40.160.180 | Mainly Beta › Beta Barrel › Porin › Carbohydrate-selective porin OprB | 0.52 | 40.0 | 2.88e-01 | 95.7% | 26.1% |
| 4k3yC00 | 2.120.10.10 | Mainly Beta › 6 Propeller › Neuraminidase › | 0.52 | 47.0 | 3.13e-01 | 100.0% | 64.5% |
| 3gp6A00 | 2.40.160.20 | Mainly Beta › Beta Barrel › Porin › | 0.52 | 45.0 | 3.86e-01 | 100.0% | 62.6% |
| 3h51A00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.51 | 44.0 | 3.88e-01 | 97.8% | 96.5% |
ECOD (36)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3458037 | 243.3.1.19 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › DUF3615 | 0.72 | 60.0 | 4.87e-01 | 91.3% | 62.9% |
| 3225768 | 883.1.1.0 ↗ | a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like | 0.71 | 53.0 | 4.30e-01 | 78.3% | 67.6% |
| 3977502 | 243.1.1.18 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 | 0.69 | 49.0 | 4.35e-01 | 73.9% | 84.6% |
| 3387344 | 7503.1.1.4 ↗ | a/b three-layered sandwiches › TolB, N-terminal domain › TolB, N-terminal domain › TolB, N-terminal domain › LptE | 0.69 | 49.0 | 4.25e-01 | 75.0% | 75.2% |
| 4003790 | 330.1.1.2 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › Ribosomal_S5 | 0.64 | 45.0 | 4.35e-01 | 73.9% | 71.4% |
| 3282685 | 243.1.1.0 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like | 0.63 | 49.0 | 4.48e-01 | 82.6% | 95.0% |
| 3811744 | 243.1.1.49 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › DUF2358 | 0.63 | 51.0 | 4.42e-01 | 88.0% | 80.0% |
| 4942841 | 243.1.1.0 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like | 0.61 | 42.0 | 3.97e-01 | 72.8% | 83.5% |
| 3696424 | 243.1.1.0 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like | 0.60 | 50.0 | 4.29e-01 | 91.3% | 92.0% |
| 3212332 | 243.1.1.85 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › PF26531 | 0.60 | 52.0 | 4.65e-01 | 95.7% | 95.4% |
| 3963916 | 7503.1.1.6 ↗ | a/b three-layered sandwiches › TolB, N-terminal domain › TolB, N-terminal domain › TolB, N-terminal domain › GNA1162-like | 0.60 | 41.0 | 3.32e-01 | 70.7% | 76.2% |
| 5039727 | 2484.1.1.66 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_3 | 0.60 | 46.0 | 3.57e-01 | 83.7% | 81.8% |
| 3727921 | 243.1.1.0 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like | 0.59 | 51.0 | 4.44e-01 | 95.7% | 98.6% |
| 3242736 | 243.1.1.0 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like | 0.58 | 50.0 | 4.36e-01 | 94.6% | 87.9% |
| 3419997 | 243.3.1.19 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › DUF3615 | 0.58 | 48.0 | 4.61e-01 | 93.5% | 91.7% |
| 3980178 | 7503.1.1.13 ↗ | a/b three-layered sandwiches › TolB, N-terminal domain › TolB, N-terminal domain › TolB, N-terminal domain › Lipoprotein_16 | 0.57 | 42.0 | 3.50e-01 | 78.3% | 71.2% |
| 3241023 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.57 | 45.0 | 2.85e-01 | 85.9% | 88.3% |
| 3808882 | 4051.1.1.1 ↗ | a+b two layers › a+b domain in Capz › a+b domain in Capz › a+b domain in Capz › F_actin_cap_B | 0.56 | 41.0 | 3.34e-01 | 76.1% | 60.6% |
| 3960172 | 243.1.1.18 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 | 0.56 | 44.0 | 4.11e-01 | 85.9% | 91.5% |
| 3479831 | 243.1.1.0 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like | 0.56 | 46.0 | 3.86e-01 | 92.4% | 76.4% |
| 139114 | 243.1.1.1 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › Ring_hydroxyl_B | 0.56 | 46.0 | 3.75e-01 | 93.5% | 80.1% |
| 4291975 | 2004.1.1.26 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinesin | 0.55 | 46.0 | 3.04e-01 | 91.3% | 77.2% |
| 4087100 | 330.1.1.2 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › Ribosomal_S5 | 0.55 | 40.0 | 4.33e-01 | 85.9% | 88.7% |
| 5083710 | 2004.1.1.198 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23 | 0.55 | 43.0 | 3.10e-01 | 84.8% | 47.9% |
| 4664562 | 243.1.1.1 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › Ring_hydroxyl_B | 0.54 | 48.0 | 3.94e-01 | 100.0% | 92.6% |
| 3285746 | 243.1.1.26 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_4 | 0.54 | 46.0 | 3.90e-01 | 94.6% | 76.8% |
| 3966293 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.54 | 40.0 | 4.36e-01 | 88.0% | 94.7% |
| 3326287 | 4051.1.1.1 ↗ | a+b two layers › a+b domain in Capz › a+b domain in Capz › a+b domain in Capz › F_actin_cap_B | 0.54 | 39.0 | 3.62e-01 | 76.1% | 83.3% |
| 3967916 | 243.1.1.25 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_3 | 0.54 | 45.0 | 3.93e-01 | 94.6% | 89.2% |
| 4978072 | 512.1.1.0 ↗ | a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) | 0.54 | 37.0 | 3.54e-01 | 71.7% | 64.5% |
| 3969379 | 243.1.1.0 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like | 0.53 | 44.0 | 3.81e-01 | 92.4% | 79.3% |
| 3288819 | 243.1.1.25 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_3 | 0.53 | 44.0 | 3.82e-01 | 93.5% | 88.7% |
| 169776 | 243.1.1.4 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › PHZA_PHZB | 0.53 | 44.0 | 3.70e-01 | 92.4% | 73.5% |
| 3701390 | 11.8.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Osmotin-like › Osmotin-like | 0.53 | 46.0 | 3.48e-01 | 100.0% | 88.2% |
| 3698492 | 216.1.1.0 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like | 0.51 | 43.0 | 3.99e-01 | 100.0% | 72.0% |
| 4988603 | 2484.1.1.59 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › NurA | 0.50 | 37.0 | 2.61e-01 | 77.2% | 84.3% |