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BML_08012017_9_75m_scaffold_2_prodigal-single.1__X__X__00146
Bact-VirBML_08012017_9_75m_scaffold_2_prodigal-single.1__X__X__00146
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-65
Domain cluster:
rep: GWB1_scaffold_combined_curated_closed_complete_prodigal-single.1__X__X__00096__D3-64
CATH (34)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1hxdA03 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.74 | 48.0 | 5.72e-01 | 92.2% | 100.0% |
| 6my0A02 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.68 | 49.0 | 4.94e-01 | 98.4% | 76.9% |
| 2k57A00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.67 | 50.0 | 5.35e-01 | 95.3% | 94.5% |
| 2ra2B00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.67 | 50.0 | 5.19e-01 | 95.3% | 89.7% |
| 2digA00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.65 | 49.0 | 4.83e-01 | 100.0% | 77.9% |
| 2eqjA00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.64 | 47.0 | 4.74e-01 | 100.0% | 78.8% |
| 1zq1A01 | 2.30.30.520 | Mainly Beta › Roll › SH3 type barrels. › | 0.63 | 54.0 | 5.15e-01 | 100.0% | 80.5% |
| 2f5tX02 | 2.30.30.690 | Mainly Beta › Roll › SH3 type barrels. › | 0.62 | 53.0 | 4.82e-01 | 100.0% | 81.1% |
| 3obyA01 | 2.30.30.870 | Mainly Beta › Roll › SH3 type barrels. › Pelota, domain A | 0.61 | 51.0 | 4.32e-01 | 100.0% | 55.0% |
| 1vw4M01 | 2.30.30.790 | Mainly Beta › Roll › SH3 type barrels. › | 0.61 | 54.0 | 4.28e-01 | 100.0% | 50.8% |
| 5kcoA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.60 | 47.0 | 4.84e-01 | 98.4% | 93.2% |
| 2fhdA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.59 | 46.0 | 4.69e-01 | 95.3% | 90.3% |
| 3agjF01 | 2.30.30.870 | Mainly Beta › Roll › SH3 type barrels. › Pelota, domain A | 0.59 | 50.0 | 4.11e-01 | 100.0% | 62.2% |
| 3cp7B02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.59 | 48.0 | 4.11e-01 | 100.0% | 55.2% |
| 1m9uA01 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.58 | 49.0 | 4.02e-01 | 100.0% | 59.1% |
| 1wgsA00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.58 | 47.0 | 3.78e-01 | 100.0% | 44.4% |
| 1ixdA00 | 2.30.30.190 | Mainly Beta › Roll › SH3 type barrels. › CAP Gly-rich-like domain | 0.58 | 51.0 | 4.35e-01 | 100.0% | 70.2% |
| 1sg5A01 | 2.30.30.400 | Mainly Beta › Roll › SH3 type barrels. › Rof-like | 0.57 | 46.0 | 4.41e-01 | 100.0% | 77.9% |
| 1eq9A01 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.57 | 48.0 | 4.02e-01 | 98.4% | 62.4% |
| 2vgmA01 | 2.30.30.870 | Mainly Beta › Roll › SH3 type barrels. › Pelota, domain A | 0.57 | 48.0 | 4.01e-01 | 100.0% | 59.8% |
| 1gvzA01 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.56 | 47.0 | 3.96e-01 | 100.0% | 62.8% |
| 3fzzA01 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.56 | 47.0 | 3.98e-01 | 100.0% | 62.5% |
| 3askA02 | 2.30.30.1150 | Mainly Beta › Roll › SH3 type barrels. › | 0.55 | 46.0 | 3.66e-01 | 100.0% | 42.4% |
| 3h7tB01 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.55 | 46.0 | 3.91e-01 | 100.0% | 64.8% |
| 1c8zA00 | 3.20.90.10 | Alpha Beta › Alpha-Beta Barrel › Tubby Protein; Chain A › Tubby Protein; Chain A | 0.55 | 46.0 | 3.06e-01 | 95.3% | 49.1% |
| 1ywyA00 | 3.40.1170.40 | Alpha Beta › 3-Layer(aba) Sandwich › MutS, DNA mismatch repair protein, domain I › Protein of unknown function DUF3203 | 0.54 | 40.0 | 3.92e-01 | 90.6% | 71.6% |
| 5fcrA01 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.54 | 45.0 | 3.81e-01 | 100.0% | 61.5% |
| 2eyzA03 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.54 | 38.0 | 3.50e-01 | 89.1% | 54.9% |
| 2nysA00 | 2.30.30.220 | Mainly Beta › Roll › SH3 type barrels. › SspB-like | 0.53 | 45.0 | 3.80e-01 | 100.0% | 73.5% |
| 2lccA00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.53 | 43.0 | 4.13e-01 | 96.9% | 80.3% |
| 1xqbA01 | 2.40.30.70 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › YaeB-like | 0.53 | 46.0 | 3.90e-01 | 100.0% | 61.5% |
| 5lm7A02 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.52 | 39.0 | 3.68e-01 | 81.2% | 89.7% |
| 1jegA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.51 | 42.0 | 4.34e-01 | 93.8% | 100.0% |
| 1h2cA00 | 2.70.20.20 | Mainly Beta › Distorted Sandwich › Topoisomerase I; domain 3 › Matrix protein VP40, N-terminal domain | 0.51 | 43.0 | 3.57e-01 | 98.4% | 92.7% |
ECOD (60)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5043979 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.71 | 63.0 | 6.14e-01 | 100.0% | 90.0% |
| 3289944 | 4.1.1.323 ↗ | beta barrels › SH3 › SH3 › SH3 › WYL | 0.70 | 60.0 | 5.33e-01 | 100.0% | 67.8% |
| 3328224 | 4.1.1.336 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF7699 | 0.69 | 59.0 | 4.76e-01 | 100.0% | 64.6% |
| 3281271 | 4.31.1.1 ↗ | beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL | 0.68 | 57.0 | 5.14e-01 | 100.0% | 67.8% |
| 3811728 | 4.8.1.49 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › DUF7699 | 0.67 | 57.0 | 4.58e-01 | 100.0% | 62.2% |
| 3880508 | 4.1.1.129 ↗ | beta barrels › SH3 › SH3 › SH3 › Tudor_5 | 0.66 | 52.0 | 4.65e-01 | 100.0% | 60.0% |
| 3503000 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.66 | 56.0 | 5.22e-01 | 100.0% | 94.1% |
| 3439920 | 4.1.1.336 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF7699 | 0.66 | 55.0 | 4.39e-01 | 100.0% | 59.3% |
| 376763 | 3529.1.1.2 ↗ | beta sandwiches › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Vault_2 | 0.65 | 45.0 | 4.95e-01 | 95.3% | 92.2% |
| 3422764 | 4.1.1.313 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF7912 | 0.64 | 44.0 | 4.85e-01 | 81.2% | 94.0% |
| 3608562 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.64 | 53.0 | 4.00e-01 | 100.0% | 37.1% |
| 4161673 | 4.1.1.105 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF5604 | 0.63 | 50.0 | 4.56e-01 | 100.0% | 65.9% |
| 3704395 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.63 | 51.0 | 5.16e-01 | 100.0% | 92.2% |
| 3855038 | 4.1.1.105 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF5604 | 0.63 | 49.0 | 3.73e-01 | 100.0% | 35.0% |
| 4964141 | 4.15.1.2 ↗ | beta barrels › SH3 › TrmB C-terminal domain-like › TrmB C-terminal domain-like › PF31112 | 0.63 | 55.0 | 4.94e-01 | 100.0% | 78.9% |
| 3591144 | 4.8.1.0 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like | 0.62 | 52.0 | 4.06e-01 | 98.4% | 41.3% |
| 2727964 | 4.1.1.105 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF5604 | 0.62 | 49.0 | 5.04e-01 | 100.0% | 94.9% |
| 3281618 | 4.31.1.1 ↗ | beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL | 0.62 | 54.0 | 4.71e-01 | 100.0% | 73.0% |
| 3437797 | 219.1.1.0 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases | 0.62 | 52.0 | 3.59e-01 | 100.0% | 33.2% |
| 3788630 | 4.23.1.2 ↗ | beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like › PF26356 | 0.62 | 52.0 | 4.22e-01 | 100.0% | 63.7% |
| 5036729 | 4.23.1.2 ↗ | beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like › PF26356 | 0.62 | 53.0 | 4.38e-01 | 100.0% | 63.3% |
| 4941652 | 4.23.1.2 ↗ | beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like › PF26356 | 0.62 | 52.0 | 4.31e-01 | 100.0% | 64.8% |
| 3581336 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.61 | 51.0 | 4.35e-01 | 100.0% | 55.5% |
| 5075523 | 2003.1.5.13 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Spermine_synth | 0.61 | 46.0 | 3.00e-01 | 89.1% | 17.6% |
| 3917372 | 4.1.1.101 ↗ | beta barrels › SH3 › SH3 › SH3 › Tudor_2 | 0.61 | 46.0 | 4.40e-01 | 100.0% | 70.7% |
| 3612182 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.61 | 52.0 | 4.75e-01 | 100.0% | 98.9% |
| 4999914 | 4.23.1.2 ↗ | beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like › PF26356 | 0.61 | 52.0 | 4.22e-01 | 100.0% | 64.6% |
| 3497089 | 219.1.1.0 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases | 0.61 | 50.0 | 3.36e-01 | 100.0% | 31.8% |
| 3837995 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.60 | 42.0 | 4.42e-01 | 100.0% | 85.5% |
| 4071824 | 4.17.1.1 ↗ | beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N | 0.60 | 53.0 | 5.06e-01 | 100.0% | 88.0% |
| 4028378 | 4.23.1.2 ↗ | beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like › PF26356 | 0.60 | 51.0 | 4.17e-01 | 100.0% | 63.1% |
| 3486878 | 219.1.1.110 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1, Peptidase_C1_2 | 0.60 | 50.0 | 3.31e-01 | 100.0% | 30.9% |
| 3185321 | 4.1.1.51 ↗ | beta barrels › SH3 › SH3 › SH3 › SGF29_Tudor | 0.60 | 52.0 | 5.00e-01 | 100.0% | 88.0% |
| 5000523 | 4.23.1.2 ↗ | beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like › PF26356 | 0.60 | 51.0 | 4.24e-01 | 100.0% | 65.0% |
| 5054152 | 4.23.1.2 ↗ | beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like › PF26356 | 0.60 | 51.0 | 4.19e-01 | 100.0% | 63.2% |
| 2552660 | 4.23.1.2 ↗ | beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like › PF26356 | 0.59 | 50.0 | 4.11e-01 | 100.0% | 62.2% |
| 3650249 | 1.1.5.33 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 | 0.58 | 49.0 | 3.38e-01 | 100.0% | 25.3% |
| 3479686 | 1.1.17.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 | 0.58 | 50.0 | 3.34e-01 | 100.0% | 27.4% |
| 3511007 | 4.8.1.6 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot | 0.58 | 48.0 | 4.06e-01 | 100.0% | 54.2% |
| 3553413 | 4.8.1.6 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot | 0.57 | 48.0 | 4.49e-01 | 100.0% | 74.1% |
| 4215369 | 4.23.1.2 ↗ | beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like › PF26356 | 0.57 | 46.0 | 3.92e-01 | 100.0% | 65.6% |
| 3397934 | 1.1.17.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin | 0.57 | 47.0 | 3.26e-01 | 100.0% | 28.6% |
| 3700744 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.56 | 47.0 | 4.10e-01 | 95.3% | 99.0% |
| 3288897 | 304.103.1.1 ↗ | a+b two layers › Alpha-beta plaits › FMN-dependent nitroreductase-like › FMN-dependent nitroreductase-like › Nitroreductase | 0.56 | 35.0 | 2.39e-01 | 81.2% | 14.7% |
| 3580370 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.55 | 46.0 | 3.83e-01 | 100.0% | 57.6% |
| 3966871 | 1.1.1.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease | 0.55 | 42.0 | 3.42e-01 | 85.9% | 53.8% |
| 134809 | 1.1.17.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin | 0.54 | 46.0 | 3.24e-01 | 100.0% | 32.5% |
| 2129789 | 1.1.5.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin | 0.54 | 40.0 | 3.92e-01 | 92.2% | 73.9% |
| 2121553 | 4.1.1.1 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_1 | 0.54 | 44.0 | 4.36e-01 | 95.3% | 87.1% |
| 3213653 | 4.1.1.54 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_2 | 0.53 | 43.0 | 4.09e-01 | 93.8% | 95.0% |
| 3272197 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.53 | 44.0 | 3.88e-01 | 100.0% | 68.6% |
| 4636051 | 1.1.7.11 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM | 0.52 | 44.0 | 3.86e-01 | 100.0% | 62.9% |
| 3936663 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.52 | 45.0 | 3.69e-01 | 100.0% | 66.4% |
| 3614316 | 1116.1.1.0 ↗ | a+b two layers › Polycystin-mucolipin domain › Polycystin-mucolipin domain › Polycystin-mucolipin domain | 0.52 | 46.0 | 3.35e-01 | 100.0% | 45.9% |
| 5055039 | 4.11.1.2 ↗ | beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S26 | 0.52 | 42.0 | 3.47e-01 | 100.0% | 46.4% |
| 4019054 | 220.1.1.13 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › DCP1 | 0.51 | 42.0 | 3.28e-01 | 100.0% | 67.3% |
| 3729350 | 5.1.4.411 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, DUF2415 | 0.51 | 42.0 | 2.59e-01 | 92.2% | 26.3% |
| 3401352 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.51 | 44.0 | 3.61e-01 | 98.4% | 86.7% |
| 4396837 | 7.1.1.5 ↗ | beta barrels › PDZ domain › PDZ domain › PDZ domain › PDZ_2 | 0.51 | 42.0 | 3.44e-01 | 93.8% | 70.4% |
| 3286458 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.50 | 42.0 | 3.51e-01 | 100.0% | 56.8% |