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BML_08012017_9_75m_scaffold_2_prodigal-single.1__X__X__00159

Bact-Vir

BML_08012017_9_75m_scaffold_2_prodigal-single.1__X__X__00159

Identity

Kingdom:
phage

Quality

80.7 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 1-68
PDB
Domain cluster: representative
CATH (37)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2gxaE01 1.10.10.510 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Zinc finger, large T-antigen D1 domain 0.70 53.0 5.20e-01 80.9% 89.0%
3p2mA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.69 49.0 3.25e-01 75.0% 68.0%
3iuoA00 1.10.10.1390 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › ATP-dependent DNA helicase RecQ 0.69 48.0 4.14e-01 88.2% 45.9%
6tmfT00 1.10.60.20 Mainly Alpha › Orthogonal Bundle › Diphtheria Toxin Repressor; domain 2 › Ribosomal protein S17 0.67 51.0 5.23e-01 83.8% 87.5%
7s03A01 1.10.10.1450 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.66 45.0 5.08e-01 88.2% 96.0%
6e6qA00 1.10.10.1100 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › BFD-like [2Fe-2S]-binding domain 0.66 50.0 5.36e-01 83.8% 100.0%
3bulA01 1.10.1240.10 Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Methionine synthase domain 0.65 45.0 4.17e-01 73.5% 79.3%
3r2cA00 1.10.940.10 Mainly Alpha › Orthogonal Bundle › N-utilizing Substance Protein B Homolog; Chain A › NusB-like 0.63 55.0 4.40e-01 98.5% 60.1%
2xzmV01 1.10.60.20 Mainly Alpha › Orthogonal Bundle › Diphtheria Toxin Repressor; domain 2 › Ribosomal protein S17 0.63 48.0 5.02e-01 88.2% 95.1%
3lcnB00 1.10.340.40 Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Nuclear abundant poly(A) RNA-bind protein 2, N-terminal domain 0.62 52.0 4.66e-01 98.5% 66.0%
1ci4A00 1.10.150.40 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Barrier-to-autointegration factor, BAF 0.62 52.0 4.83e-01 95.6% 84.1%
3emuA00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.62 50.0 4.00e-01 92.6% 63.9%
2p5kA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 43.0 4.45e-01 75.0% 81.0%
1lfuP00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.60 43.0 4.08e-01 83.8% 63.4%
5hdiA00 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.60 45.0 2.82e-01 80.9% 73.0%
2qytA02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.60 42.0 3.84e-01 77.9% 70.3%
6i7eA01 1.20.58.530 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.60 47.0 3.64e-01 91.2% 65.7%
3nufB00 1.10.1790.10 Mainly Alpha › Orthogonal Bundle › PTS-regulatory domain, PRD › PRD domain 0.59 49.0 4.29e-01 97.1% 98.2%
4z4qA04 1.10.268.10 Mainly Alpha › Orthogonal Bundle › Topoisomerase; domain 3 › Topoisomerase, domain 3 0.59 43.0 4.02e-01 83.8% 60.7%
7ccmB01 1.10.437.10 Mainly Alpha › Orthogonal Bundle › Apoptosis Regulator Bcl-x › Blc2-like 0.59 45.0 3.57e-01 83.8% 47.6%
4akgA06 1.10.8.710 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Dynein motor, AAA1 domain, small subdomain 0.58 42.0 3.69e-01 79.4% 96.3%
1lddA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 43.0 4.23e-01 88.2% 75.7%
1vw4L02 1.10.246.170 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › 0.56 44.0 4.19e-01 88.2% 82.4%
3n0uA02 1.10.340.30 Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Hypothetical protein; domain 2 0.56 46.0 4.06e-01 95.6% 96.3%
3eyyA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 46.0 4.44e-01 100.0% 92.7%
2xigA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 46.0 4.26e-01 100.0% 87.9%
3d3oA00 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.55 45.0 3.41e-01 94.1% 90.9%
1h99A02 1.10.1790.10 Mainly Alpha › Orthogonal Bundle › PTS-regulatory domain, PRD › PRD domain 0.54 42.0 3.68e-01 86.8% 96.2%
1v9mA02 1.20.1690.10 Mainly Alpha › Up-down Bundle › V-type ATP synthase subunit C fold › V-type ATP synthase subunit C domain 0.54 39.0 3.53e-01 80.9% 79.2%
2p1aB01 1.20.120.450 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › dinb family like domain 0.53 45.0 3.64e-01 100.0% 78.1%
1x4qA01 1.20.1390.10 Mainly Alpha › Up-down Bundle › PWI domain › PWI domain 0.53 43.0 4.30e-01 97.1% 90.1%
2mgqA00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.53 41.0 4.19e-01 88.2% 88.2%
3tjmA02 1.10.1470.20 Mainly Alpha › Orthogonal Bundle › Protein Yjbj; Chain: A; › Fatty acid synthase; domain 2 0.53 39.0 3.62e-01 80.9% 100.0%
1ig8A03 3.40.367.20 Alpha Beta › 3-Layer(aba) Sandwich › Hexokinase; domain 1 › 0.52 43.0 3.04e-01 100.0% 52.5%
3au4A01 1.25.40.530 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › MyTH4 domain 0.52 43.0 3.17e-01 94.1% 38.8%
3bz6A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 40.0 3.89e-01 88.2% 85.9%
2hoxA02 3.40.640.10 Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) 0.50 42.0 3.10e-01 100.0% 75.7%
ECOD (62)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5028090 610.3.1.0 alpha arrays › ERP29 C domain-like › GatB/GatE C-terminal domain › GatB/GatE C-terminal domain 0.80 56.0 4.34e-01 73.5% 54.5%
3281058 101.35.1.10 alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › DUF4287 0.76 56.0 5.93e-01 80.9% 88.3%
3573652 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.74 50.0 5.58e-01 83.8% 96.0%
4595954 101.11.1.0 alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 0.73 57.0 5.29e-01 83.8% 80.0%
4436943 101.11.1.1 alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › PNPase 0.70 56.0 5.31e-01 85.3% 86.3%
5025549 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.70 48.0 4.92e-01 72.1% 93.8%
3455407 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.69 48.0 5.13e-01 72.1% 100.0%
4025625 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.69 53.0 5.30e-01 82.4% 85.5%
3454767 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.69 48.0 5.15e-01 73.5% 100.0%
3482967 168.1.1.1 alpha arrays › Sec7 domain › Sec7 domain › Sec7 domain › Sec7 0.69 61.0 4.40e-01 100.0% 61.0%
4953832 7000.1.1.0 alpha arrays › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS 0.68 47.0 5.11e-01 88.2% 90.9%
3422646 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.68 48.0 5.01e-01 75.0% 96.7%
3330562 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.68 48.0 4.66e-01 75.0% 78.7%
3687311 101.32.1.1 alpha arrays › HTH › bacterioferritin-associated ferredoxin › bacterioferritin-associated ferredoxin › Fer2_BFD 0.67 54.0 5.38e-01 89.7% 85.7%
4013216 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.67 52.0 5.47e-01 83.8% 100.0%
5028427 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.66 49.0 4.28e-01 80.9% 55.2%
4929122 7000.1.1.0 alpha arrays › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS 0.65 48.0 4.94e-01 89.7% 83.1%
4464648 101.1.2.244 alpha arrays › HTH › HTH › winged helix domain › HTH_21 0.65 50.0 5.12e-01 91.2% 87.7%
167309 592.2.1.3 alpha arrays › PWI domain-like › YugE-like › YugE-like › Nab2 0.64 54.0 4.72e-01 94.1% 61.0%
3814136 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.63 44.0 4.75e-01 73.5% 100.0%
4271175 101.1.2.498 alpha arrays › HTH › HTH › winged helix domain › PF25870 0.63 51.0 4.15e-01 91.2% 80.0%
3236431 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.63 48.0 4.79e-01 88.2% 80.0%
4994428 101.1.17.1 alpha arrays › HTH › HTH › FF domain › Ribosomal_S17e 0.63 48.0 4.80e-01 83.8% 81.4%
3266110 592.7.1.0 alpha arrays › PWI domain-like › GIPC1 GH2 domain › GIPC1 GH2 domain 0.62 55.0 5.23e-01 100.0% 86.3%
3264673 101.1.2.498 alpha arrays › HTH › HTH › winged helix domain › PF25870 0.62 50.0 4.11e-01 91.2% 83.1%
3884711 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.61 45.0 4.64e-01 80.9% 90.8%
3810810 101.1.1.50 alpha arrays › HTH › HTH › Three-helical HTH › Nop16 0.61 42.0 4.56e-01 94.1% 92.5%
4028411 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.61 50.0 5.11e-01 94.1% 96.9%
3933926 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.60 45.0 4.58e-01 79.4% 86.2%
4237263 4964.1.1.1 alpha arrays › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › DNA_pol_A 0.60 51.0 4.35e-01 100.0% 67.5%
3366917 101.35.1.0 alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX 0.60 45.0 4.83e-01 83.8% 100.0%
3839206 101.11.1.1 alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › PNPase 0.59 43.0 4.16e-01 77.9% 93.8%
4966213 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.59 44.0 4.50e-01 80.9% 92.3%
5008720 101.1.1.548 alpha arrays › HTH › HTH › Three-helical HTH › HTH_32 0.59 44.0 4.52e-01 83.8% 90.8%
3908865 101.1.2.536 alpha arrays › HTH › HTH › winged helix domain › HTH_Tnp_Tc3_2 0.58 40.0 4.35e-01 72.1% 94.5%
4994794 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.58 44.0 4.30e-01 89.7% 74.7%
3198858 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.58 44.0 4.42e-01 85.3% 87.1%
4952808 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.58 42.0 4.55e-01 77.9% 100.0%
5049455 101.1.2.54 alpha arrays › HTH › HTH › winged helix domain › Penicillinase_R 0.58 49.0 3.96e-01 98.5% 51.4%
3283124 101.1.2.78 alpha arrays › HTH › HTH › winged helix domain › AlkZ-like 0.57 49.0 4.28e-01 100.0% 84.5%
3406651 592.7.1.1 alpha arrays › PWI domain-like › GIPC1 GH2 domain › GIPC1 GH2 domain › GIPC1_GH2 0.57 49.0 4.82e-01 100.0% 92.0%
5073910 304.103.1.1 a+b two layers › Alpha-beta plaits › FMN-dependent nitroreductase-like › FMN-dependent nitroreductase-like › Nitroreductase 0.57 47.0 3.41e-01 94.1% 78.0%
5007660 101.1.1.187 alpha arrays › HTH › HTH › Three-helical HTH › HTH_33 0.57 43.0 4.45e-01 85.3% 92.3%
5074546 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.57 44.0 4.15e-01 100.0% 68.2%
5003693 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.57 43.0 4.38e-01 83.8% 90.8%
3417440 708.1.1.0 beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain 0.57 47.0 3.91e-01 100.0% 90.4%
5021354 101.1.2.619 alpha arrays › HTH › HTH › winged helix domain › HTH_33 0.57 41.0 4.18e-01 77.9% 83.1%
3342850 592.7.1.0 alpha arrays › PWI domain-like › GIPC1 GH2 domain › GIPC1 GH2 domain 0.56 48.0 4.72e-01 100.0% 92.0%
4547252 194.1.1.1 alpha complex topology › Serum albumin-like › Serum albumin-like › Serum albumin-like › Serum_albumin 0.56 41.0 3.14e-01 80.9% 76.7%
3261856 101.1.1.50 alpha arrays › HTH › HTH › Three-helical HTH › Nop16 0.55 40.0 4.06e-01 94.1% 81.5%
5029743 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.55 47.0 4.25e-01 100.0% 82.1%
4653062 604.4.1.0 alpha bundles › Spectrin repeat-like › Alpha-hemoglobin stabilizing protein AHSP › Alpha-hemoglobin stabilizing protein AHSP 0.55 41.0 3.56e-01 82.4% 80.0%
3283862 2498.1.1.0 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" 0.54 40.0 2.78e-01 82.4% 47.4%
3718863 108.1.1.0 alpha arrays › EF-hand › EF-hand-related › EF-hand 0.54 38.0 3.65e-01 75.0% 77.5%
3468254 592.2.1.0 alpha arrays › PWI domain-like › YugE-like › YugE-like 0.54 45.0 4.49e-01 100.0% 95.7%
5013440 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.54 46.0 3.70e-01 98.5% 51.4%
3518336 2004.5.1.14 a/b three-layered sandwiches › P-loop domains-like › Differentially expressed in normal cells and neoplasia (DENN) domain › Differentially expressed in normal cells and neoplasia (DENN) domain › PF27109 0.52 44.0 3.26e-01 100.0% 99.5%
3848799 3755.2.1.4 alpha bundles › YscO-like › Flagellar FliJ protein › Flagellar FliJ protein › PF26143 0.52 36.0 2.97e-01 75.0% 78.5%
3203593 4095.1.1.1 alpha bundles › ATP-dependent DNA ligase DNA-binding domain › ATP-dependent DNA ligase DNA-binding domain › ATP-dependent DNA ligase DNA-binding domain › DNA_ligase_A_N 0.51 35.0 2.91e-01 70.6% 90.8%
3709674 101.1.1.50 alpha arrays › HTH › HTH › Three-helical HTH › Nop16 0.51 41.0 4.01e-01 91.2% 96.0%
3601831 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.51 40.0 3.97e-01 91.2% 96.0%
4875022 630.1.1.1 a+b complex topology › RuBisCo LSMT C-terminal, substrate-binding domain › RuBisCo LSMT C-terminal, substrate-binding domain › RuBisCo LSMT C-terminal, substrate-binding domain › Rubis-subs-bind 0.50 43.0 3.50e-01 100.0% 80.9%