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BML_08012017_9_75m_scaffold_2_prodigal-single.1__X__X__00168

Bact-Vir

BML_08012017_9_75m_scaffold_2_prodigal-single.1__X__X__00168

Identity

Kingdom:
phage

Quality

56.9 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 43-97
PDB
Domain cluster: representative
CATH (57)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3w1hA01 3.90.1150.110 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › 0.73 54.0 3.70e-01 80.0% 36.5%
3ga8A00 3.10.20.860 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.73 59.0 5.55e-01 89.1% 95.5%
2ptfA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.72 54.0 3.98e-01 81.8% 30.6%
7sxqA01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.69 55.0 3.58e-01 87.3% 24.2%
1uzxA00 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.69 48.0 3.58e-01 74.5% 30.7%
4r9iA02 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.68 46.0 3.85e-01 72.7% 100.0%
3lxrF00 1.10.4120.20 Mainly Alpha › Orthogonal Bundle › SopE-like GEF fold › 0.67 46.0 3.18e-01 74.5% 21.5%
1w5rA01 3.30.2140.10 Alpha Beta › 2-Layer Sandwich › Arylamine N-acetyltransferase fold › Arylamine N-acetyltransferase 0.66 36.0 2.54e-01 76.4% 16.2%
5iu1B00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.66 46.0 3.72e-01 74.5% 40.2%
5ib9A01 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.65 45.0 2.84e-01 72.7% 34.0%
3ebtA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.64 50.0 3.91e-01 90.9% 40.5%
2b02A01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.63 44.0 3.65e-01 74.5% 44.2%
1btkA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.63 44.0 3.24e-01 76.4% 30.6%
6j0qA02 2.40.30.120 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Positive stranded ssRNA viruses 0.63 44.0 3.60e-01 74.5% 44.0%
2veoA01 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.62 47.0 2.95e-01 85.5% 31.7%
3n91A02 2.40.128.420 Mainly Beta › Beta Barrel › Lipocalin › 0.62 45.0 3.43e-01 80.0% 57.4%
3wa5B00 2.60.120.1690 Mainly Beta › Sandwich › Jelly Rolls › 0.62 44.0 3.45e-01 81.8% 34.7%
4hiaA00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.61 43.0 3.11e-01 76.4% 26.1%
2gj3A00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.61 47.0 3.73e-01 85.5% 40.3%
3a9gA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.61 44.0 2.74e-01 80.0% 12.7%
3njaA02 2.10.70.100 Mainly Beta › Ribbon › Complement Module; domain 1 › 0.60 45.0 4.75e-01 83.6% 100.0%
7a6pB01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.60 42.0 3.20e-01 74.5% 32.6%
3icyA00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.59 41.0 3.34e-01 76.4% 38.1%
2y7bA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.59 45.0 3.47e-01 85.5% 37.3%
4g29A00 3.10.670.10 Alpha Beta › Roll › Secreted effector protein ssei fold › Secreted effector protein ssei. 0.59 46.0 3.37e-01 89.1% 30.1%
3ewkA01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.59 44.0 3.68e-01 83.6% 44.7%
6kjuB01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.58 41.0 3.32e-01 76.4% 38.5%
3mqqB00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.58 41.0 3.33e-01 78.2% 38.1%
8in8C01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.56 46.0 3.05e-01 96.4% 95.8%
4bq2D01 2.60.120.430 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding lectin 0.56 38.0 2.77e-01 74.5% 86.2%
3rd4B00 2.40.50.660 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.56 37.0 3.35e-01 70.9% 56.1%
7c5wA01 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 39.0 3.00e-01 76.4% 29.7%
1h91A00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.55 41.0 2.92e-01 81.8% 25.6%
8enbA01 2.10.90.10 Mainly Beta › Ribbon › Cystine Knot Cytokines, subunit B › Cystine-knot cytokines 0.55 43.0 3.80e-01 87.3% 77.1%
8aa9A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.55 38.0 3.05e-01 72.7% 36.0%
3gd6A01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.55 44.0 3.29e-01 89.1% 63.4%
4jhmA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.55 39.0 3.21e-01 80.0% 70.9%
1novA00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.54 44.0 2.78e-01 92.7% 71.5%
3nqzA02 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.54 38.0 3.46e-01 78.2% 58.3%
1h7zA00 2.60.90.10 Mainly Beta › Sandwich › Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) › Adenovirus pIV-related, attachment domain 0.54 43.0 3.17e-01 100.0% 53.4%
4qxaB00 2.30.29.230 Mainly Beta › Roll › PH-domain like › 0.54 37.0 2.93e-01 78.2% 39.5%
2ciuA00 3.10.450.320 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Mitochondrial import inner membrane translocase subunit Tim21 0.53 41.0 3.23e-01 87.3% 38.2%
1xteA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.53 37.0 3.10e-01 78.2% 37.9%
4lduA02 2.40.330.10 Mainly Beta › Beta Barrel › At1g16640 B3 domain › DNA-binding pseudobarrel domain 0.53 40.0 3.34e-01 87.3% 44.3%
7xoiD01 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.53 37.0 3.00e-01 83.6% 38.3%
5n9bA01 2.60.40.2160 Mainly Beta › Sandwich › Immunoglobulin-like › Interleukin-17 receptor A/B, fibronectin-III-like domain 1 0.53 39.0 3.10e-01 87.3% 78.8%
6nvxB02 2.30.120.10 Mainly Beta › Roll › Penicillin G acylase, beta-roll domain › Aminohydrolase, N-terminal nucleophile (Ntn) domain, beta-sheet knob region 0.52 36.0 3.26e-01 72.7% 51.9%
2daxA01 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.52 44.0 3.36e-01 98.2% 66.0%
1fm2B03 2.30.120.10 Mainly Beta › Roll › Penicillin G acylase, beta-roll domain › Aminohydrolase, N-terminal nucleophile (Ntn) domain, beta-sheet knob region 0.52 37.0 3.52e-01 74.5% 62.1%
6hmjA01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.52 37.0 3.21e-01 81.8% 42.9%
2k5vA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.52 38.0 3.30e-01 83.6% 88.8%
2nlkA02 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.52 41.0 2.68e-01 87.3% 25.0%
1a7tA00 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.52 40.0 2.65e-01 83.6% 71.4%
1se8A02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.52 42.0 3.49e-01 98.2% 99.1%
3mfxB00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.51 41.0 3.29e-01 90.9% 100.0%
1lshB00 2.20.90.10 Mainly Beta › Single Sheet › Lipovitellin-phosvitin complex; beta-sheet shell regions › Vitellinogen, beta-sheet shell domain 0.51 41.0 2.96e-01 92.7% 52.9%
4kghA00 3.15.10.10 Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › Bactericidal permeability-increasing protein; domain 1 0.51 40.0 2.95e-01 100.0% 81.9%
ECOD (57)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3516854 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.82 57.0 4.43e-01 72.7% 35.7%
3406688 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.75 51.0 4.07e-01 70.9% 38.2%
3242923 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.75 50.0 3.75e-01 74.5% 29.2%
3752543 7.1.1.17 beta barrels › PDZ domain › PDZ domain › PDZ domain › PDZ, PDZ_6 0.75 54.0 4.25e-01 76.4% 55.5%
4958701 1.1.5.17 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › DUF447_N 0.73 56.0 4.17e-01 80.0% 32.6%
3801400 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.73 49.0 3.10e-01 70.9% 13.8%
3652009 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.72 50.0 3.80e-01 72.7% 30.8%
3631814 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.72 48.0 3.56e-01 70.9% 26.0%
3732987 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.71 49.0 3.79e-01 74.5% 32.0%
3810963 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.71 48.0 3.49e-01 70.9% 25.0%
3974170 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.71 48.0 3.97e-01 70.9% 42.0%
4173753 246.1.1.1 a+b four layers › Carbon-nitrogen hydrolase-like › Carbon-nitrogen hydrolase › Carbon-nitrogen hydrolase › CN_hydrolase 0.70 52.0 3.47e-01 81.8% 62.7%
5081200 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.69 55.0 5.36e-01 89.1% 81.7%
4944871 223.1.1.14 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 0.69 47.0 3.64e-01 70.9% 32.5%
3796346 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.69 47.0 3.48e-01 70.9% 29.0%
3995314 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.68 47.0 3.57e-01 72.7% 31.1%
3935486 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.68 48.0 3.76e-01 76.4% 36.0%
3596066 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.68 47.0 3.70e-01 78.2% 32.8%
5061538 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.67 53.0 5.33e-01 89.1% 90.9%
None 0.67 49.0 3.68e-01 78.2% 30.7%
3706903 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.67 46.0 3.31e-01 70.9% 26.1%
3240166 7579.1.1.70 a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › DUF1057 0.67 53.0 3.36e-01 90.9% 27.4%
1678532 243.3.1.3 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › PepSY 0.67 46.0 4.26e-01 72.7% 58.6%
3221726 7579.1.1.70 a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › DUF1057 0.66 52.0 3.33e-01 90.9% 28.5%
3387999 2003.2.1.0 a/b three-layered sandwiches › Rossmann-like › Formate dehydrogenase/DMSO reductase, domains 2 and 3 › Formate dehydrogenase/DMSO reductase, domains 2 and 3 0.66 46.0 3.12e-01 74.5% 63.6%
3802472 5.1.3.144 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › b-prop_At3g26010-like 0.66 48.0 3.01e-01 80.0% 31.8%
5047585 223.1.1.25 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 0.65 48.0 3.77e-01 80.0% 37.5%
4946348 2484.1.1.18 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1 0.64 44.0 2.79e-01 72.7% 13.6%
3648413 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.64 43.0 3.75e-01 70.9% 43.3%
3614844 220.1.1.15 beta barrels › PH domain-like › PH domain-like › PH domain-like › BBL5 0.63 45.0 3.30e-01 81.8% 29.3%
3920536 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.63 48.0 3.46e-01 83.6% 40.0%
5063919 223.1.1.25 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 0.62 43.0 3.40e-01 78.2% 33.3%
3743164 225.1.1.0 a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 0.62 45.0 2.75e-01 81.8% 12.7%
3658860 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.62 47.0 3.14e-01 89.1% 20.5%
4996769 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.62 44.0 3.47e-01 78.2% 35.0%
3535865 11.1.1.640 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › ZP-N 0.62 48.0 3.55e-01 81.8% 68.9%
2082805 243.3.1.1 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › Cystatin 0.62 48.0 4.19e-01 90.9% 96.7%
165648 223.1.1.24 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_8 0.60 40.0 3.33e-01 70.9% 36.9%
3271628 223.1.1.24 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_8 0.59 40.0 3.26e-01 76.4% 33.9%
397995 223.1.1.13 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_3 0.59 47.0 3.90e-01 92.7% 50.9%
3788782 2004.1.1.199 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23,SbcC_Walker_B 0.56 38.0 2.22e-01 70.9% 7.6%
3977220 4121.1.1.1 a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like › CorA 0.56 38.0 2.53e-01 78.2% 15.4%
3599997 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.55 42.0 2.30e-01 83.6% 7.5%
3320817 2004.1.1.174 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Elong_Iki1 0.55 37.0 2.35e-01 70.9% 13.4%
5041112 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.55 38.0 3.56e-01 78.2% 58.6%
3563663 220.1.1.33 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_8 0.54 40.0 3.35e-01 81.8% 47.0%
3633076 1.1.1.30 beta barrels › cradle loop barrel › RIFT-related › acid protease › PF30863 0.54 38.0 3.21e-01 78.2% 44.8%
4964487 218.1.1.12 a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › PF26684 0.54 38.0 3.09e-01 74.5% 37.3%
5011027 512.1.1.2 a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_2nd 0.53 43.0 3.07e-01 92.7% 62.9%
4485316 210.1.2.1 a+b four layers › Ntn/PP2C › Ntn › Penicillin acylase, catalytic domain › Penicil_amidase 0.53 42.0 2.42e-01 100.0% 48.1%
3756160 220.1.1.33 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_8 0.53 40.0 3.07e-01 85.5% 34.5%
3593291 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.52 38.0 2.87e-01 80.0% 48.3%
5054433 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.52 37.0 3.81e-01 89.1% 90.0%
5021263 3414.1.1.13 beta sandwiches › A putative surface protein › A putative surface protein › A putative surface protein › PF29994 0.51 38.0 2.94e-01 81.8% 35.2%
3213567 390.1.1.7 few secondary structure elements › Hairpin loop containing domain-like › Hairpin loop containing domain-like › Hairpin loop containing domain-like › PAN_3 0.51 34.0 2.71e-01 70.9% 98.4%
5076489 2.1.1.15 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.50 35.0 2.79e-01 72.7% 45.2%
2507516 210.1.2.1 a+b four layers › Ntn/PP2C › Ntn › Penicillin acylase, catalytic domain › Penicil_amidase 0.50 34.0 2.04e-01 72.7% 7.5%