Back to structures

BML_08012017_9_75m_scaffold_2_prodigal-single.1__X__X__00185

Bact-Vir

BML_08012017_9_75m_scaffold_2_prodigal-single.1__X__X__00185

Identity

Kingdom:
phage

Quality

88.1 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 19-88
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF02617.23 best ClpS 27.6 2.70e-06 95.7% 75.0%
CATH (41)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1lzwA00 3.30.1390.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein L30; Chain: A, › Ribosomal protein L7/L12, C-terminal domain/Adaptor protein ClpS 0.92 86.0 7.78e-01 100.0% 83.5%
4yjmC00 3.30.1390.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein L30; Chain: A, › Ribosomal protein L7/L12, C-terminal domain/Adaptor protein ClpS 0.89 82.0 7.72e-01 100.0% 91.6%
1ctfA00 3.30.1390.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein L30; Chain: A, › Ribosomal protein L7/L12, C-terminal domain/Adaptor protein ClpS 0.81 70.0 7.11e-01 100.0% 97.1%
1rp5A03 3.30.70.2110 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.74 65.0 6.03e-01 100.0% 96.7%
3oc2A01 3.90.1310.10 Alpha Beta › Alpha-Beta Complex › Penicillin-binding protein 2a (Domain 2) › Penicillin-binding protein 2a (Domain 2) 0.73 63.0 4.73e-01 100.0% 39.3%
1fu0A00 3.30.1340.10 Alpha Beta › 2-Layer Sandwich › Histidine-containing Protein; Chain: A; › HPr-like 0.71 59.0 5.59e-01 95.7% 98.9%
7o49B01 3.30.70.2110 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.69 59.0 5.50e-01 100.0% 90.1%
5cbgA00 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.66 46.0 4.04e-01 82.9% 49.0%
3k17A02 3.30.70.890 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › GHMP kinase, C-terminal domain 0.66 58.0 4.68e-01 100.0% 96.4%
3ousA00 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.66 50.0 4.73e-01 85.7% 68.3%
4hacA02 3.30.70.890 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › GHMP kinase, C-terminal domain 0.65 58.0 4.76e-01 100.0% 100.0%
1kvkA02 3.30.70.890 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › GHMP kinase, C-terminal domain 0.65 58.0 4.56e-01 100.0% 93.9%
2hfsA02 3.30.70.890 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › GHMP kinase, C-terminal domain 0.65 57.0 4.54e-01 100.0% 91.1%
3um7A03 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.65 51.0 4.47e-01 85.7% 57.3%
2hpsA00 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.65 53.0 3.98e-01 92.9% 68.5%
1tk1A00 3.40.1500.10 Alpha Beta › 3-Layer(aba) Sandwich › oxygen-dependent coproporphyrinogen oxidase › Coproporphyrinogen III oxidase, aerobic 0.63 53.0 3.77e-01 94.3% 32.9%
1szhA01 1.10.150.360 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 0.63 51.0 5.26e-01 87.1% 100.0%
7rd0A01 3.90.1310.10 Alpha Beta › Alpha-Beta Complex › Penicillin-binding protein 2a (Domain 2) › Penicillin-binding protein 2a (Domain 2) 0.62 53.0 4.22e-01 100.0% 45.2%
2cpfA00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.60 52.0 4.71e-01 100.0% 81.6%
1iokA02 3.30.260.10 Alpha Beta › 2-Layer Sandwich › GROEL; domain 2 › TCP-1-like chaperonin intermediate domain 0.60 47.0 4.25e-01 84.3% 98.9%
3gz7B00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.59 50.0 4.59e-01 100.0% 90.8%
2j0wA04 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.59 51.0 5.00e-01 100.0% 98.7%
2cq4A01 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.58 49.0 4.52e-01 100.0% 78.4%
4p6qA02 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.58 49.0 4.85e-01 100.0% 97.4%
1r6yA00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.58 49.0 4.44e-01 100.0% 93.2%
4qu6A01 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.58 49.0 4.60e-01 100.0% 85.6%
2e44A01 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.58 49.0 4.89e-01 100.0% 96.0%
7qddB01 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.57 49.0 4.85e-01 100.0% 95.9%
7csxA02 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.57 48.0 4.81e-01 100.0% 97.2%
3sdeA02 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.57 48.0 4.54e-01 98.6% 87.6%
1wg4A01 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.57 48.0 4.70e-01 100.0% 97.4%
3v7nA02 3.40.50.1100 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.57 41.0 3.01e-01 85.7% 25.5%
2r7hB00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.54 45.0 3.50e-01 92.9% 58.5%
3iieB03 1.10.1740.10 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif 0.54 44.0 4.17e-01 94.3% 72.9%
4gbmA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.53 42.0 2.84e-01 87.1% 31.4%
4ihuA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.52 41.0 3.06e-01 88.6% 66.2%
3w0lD01 1.10.8.1080 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.52 43.0 3.83e-01 90.0% 72.3%
3n00A00 1.10.565.10 Mainly Alpha › Orthogonal Bundle › Retinoid X Receptor › Retinoid X Receptor 0.52 39.0 3.02e-01 84.3% 62.5%
1ikpA02 3.90.1350.10 Alpha Beta › Alpha-Beta Complex › Exotoxin A, middle domain › Exotoxin A, middle domain 0.51 38.0 2.97e-01 80.0% 87.3%
3tf8B00 3.90.1520.10 Alpha Beta › Alpha-Beta Complex › H-NOX domain › H-NOX domain 0.51 43.0 3.26e-01 100.0% 76.6%
3zojA00 1.20.1080.10 Mainly Alpha › Up-down Bundle › Glycerol uptake facilitator protein › Glycerol uptake facilitator protein. 0.50 39.0 2.78e-01 90.0% 54.8%
ECOD (63)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3196937 308.1.1.2 a+b two layers › ClpS-like › ClpS-related › ClpS-related › ClpS 0.98 94.0 8.44e-01 100.0% 78.9%
4017933 308.1.1.0 a+b two layers › ClpS-like › ClpS-related › ClpS-related 0.97 93.0 7.90e-01 100.0% 67.6%
3740127 308.1.1.2 a+b two layers › ClpS-like › ClpS-related › ClpS-related › ClpS 0.97 93.0 8.77e-01 100.0% 90.0%
3791732 308.1.1.2 a+b two layers › ClpS-like › ClpS-related › ClpS-related › ClpS 0.96 92.0 7.65e-01 100.0% 75.5%
3787090 308.1.1.0 a+b two layers › ClpS-like › ClpS-related › ClpS-related 0.96 92.0 7.65e-01 100.0% 64.5%
4441776 308.1.1.2 a+b two layers › ClpS-like › ClpS-related › ClpS-related › ClpS 0.96 92.0 8.56e-01 100.0% 86.7%
4182238 308.1.1.2 a+b two layers › ClpS-like › ClpS-related › ClpS-related › ClpS 0.96 91.0 8.44e-01 100.0% 83.5%
4320117 308.1.1.2 a+b two layers › ClpS-like › ClpS-related › ClpS-related › ClpS 0.96 91.0 8.29e-01 100.0% 80.7%
3503894 308.1.1.2 a+b two layers › ClpS-like › ClpS-related › ClpS-related › ClpS 0.96 91.0 8.63e-01 100.0% 96.2%
4028279 308.1.1.2 a+b two layers › ClpS-like › ClpS-related › ClpS-related › ClpS 0.96 91.0 7.45e-01 100.0% 61.7%
3739074 308.1.1.0 a+b two layers › ClpS-like › ClpS-related › ClpS-related 0.95 91.0 8.61e-01 100.0% 90.0%
3540525 308.1.1.2 a+b two layers › ClpS-like › ClpS-related › ClpS-related › ClpS 0.95 91.0 8.60e-01 100.0% 96.2%
4044190 308.1.1.2 a+b two layers › ClpS-like › ClpS-related › ClpS-related › ClpS 0.95 90.0 7.94e-01 100.0% 73.7%
3406728 308.1.1.2 a+b two layers › ClpS-like › ClpS-related › ClpS-related › ClpS 0.94 89.0 8.08e-01 100.0% 94.4%
3782919 308.1.1.2 a+b two layers › ClpS-like › ClpS-related › ClpS-related › ClpS 0.94 89.0 8.09e-01 100.0% 78.9%
4660026 308.1.1.2 a+b two layers › ClpS-like › ClpS-related › ClpS-related › ClpS 0.94 89.0 7.96e-01 100.0% 81.7%
435725 308.1.1.2 a+b two layers › ClpS-like › ClpS-related › ClpS-related › ClpS 0.94 89.0 7.55e-01 100.0% 72.4%
4398897 308.1.1.2 a+b two layers › ClpS-like › ClpS-related › ClpS-related › ClpS 0.94 89.0 7.75e-01 100.0% 77.6%
4595959 308.1.1.0 a+b two layers › ClpS-like › ClpS-related › ClpS-related 0.93 87.0 8.31e-01 100.0% 95.0%
3167139 308.1.1.2 a+b two layers › ClpS-like › ClpS-related › ClpS-related › ClpS 0.92 88.0 7.59e-01 100.0% 70.0%
4547531 308.1.1.0 a+b two layers › ClpS-like › ClpS-related › ClpS-related 0.92 85.0 7.95e-01 100.0% 83.5%
3838034 308.1.1.2 a+b two layers › ClpS-like › ClpS-related › ClpS-related › ClpS 0.92 86.0 7.78e-01 100.0% 84.4%
4064694 308.1.1.0 a+b two layers › ClpS-like › ClpS-related › ClpS-related 0.92 87.0 6.78e-01 100.0% 51.9%
3178235 308.1.1.0 a+b two layers › ClpS-like › ClpS-related › ClpS-related 0.89 83.0 7.53e-01 100.0% 81.1%
4025747 308.1.1.0 a+b two layers › ClpS-like › ClpS-related › ClpS-related 0.89 82.0 7.81e-01 100.0% 91.3%
4643549 308.1.1.0 a+b two layers › ClpS-like › ClpS-related › ClpS-related 0.82 74.0 7.27e-01 100.0% 92.0%
4162668 308.1.1.1 a+b two layers › ClpS-like › ClpS-related › ClpS-related › Ribosomal_L12 0.80 70.0 6.41e-01 100.0% 75.3%
4479433 308.1.1.1 a+b two layers › ClpS-like › ClpS-related › ClpS-related › Ribosomal_L12 0.79 68.0 6.53e-01 100.0% 82.5%
3702846 308.1.1.1 a+b two layers › ClpS-like › ClpS-related › ClpS-related › Ribosomal_L12 0.78 68.0 6.82e-01 100.0% 95.7%
4023942 308.1.1.1 a+b two layers › ClpS-like › ClpS-related › ClpS-related › Ribosomal_L12 0.77 66.0 6.38e-01 100.0% 83.7%
4027537 308.1.1.1 a+b two layers › ClpS-like › ClpS-related › ClpS-related › Ribosomal_L12 0.76 66.0 6.65e-01 98.6% 95.7%
3594075 308.1.1.0 a+b two layers › ClpS-like › ClpS-related › ClpS-related 0.73 62.0 6.00e-01 100.0% 83.7%
3280312 308.2.1.0 a+b two layers › ClpS-like › Penicillin binding protein ClpS-like domain › Penicillin binding protein ClpS-like domain 0.73 62.0 6.17e-01 100.0% 98.7%
2755152 308.2.1.0 a+b two layers › ClpS-like › Penicillin binding protein ClpS-like domain › Penicillin binding protein ClpS-like domain 0.71 61.0 6.09e-01 100.0% 94.4%
5054544 5054.1.1.0 alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels 0.71 50.0 4.61e-01 82.9% 57.8%
3971161 308.2.1.0 a+b two layers › ClpS-like › Penicillin binding protein ClpS-like domain › Penicillin binding protein ClpS-like domain 0.71 60.0 6.04e-01 98.6% 97.1%
4614734 308.2.1.0 a+b two layers › ClpS-like › Penicillin binding protein ClpS-like domain › Penicillin binding protein ClpS-like domain 0.71 62.0 6.12e-01 100.0% 96.0%
5053716 308.2.1.0 a+b two layers › ClpS-like › Penicillin binding protein ClpS-like domain › Penicillin binding protein ClpS-like domain 0.71 61.0 6.01e-01 100.0% 98.7%
2834309 308.2.1.0 a+b two layers › ClpS-like › Penicillin binding protein ClpS-like domain › Penicillin binding protein ClpS-like domain 0.71 61.0 6.09e-01 100.0% 97.2%
4006524 308.2.1.0 a+b two layers › ClpS-like › Penicillin binding protein ClpS-like domain › Penicillin binding protein ClpS-like domain 0.69 60.0 5.81e-01 100.0% 92.5%
2832640 308.2.1.1 a+b two layers › ClpS-like › Penicillin binding protein ClpS-like domain › Penicillin binding protein ClpS-like domain › PBP_dimer 0.69 59.0 5.86e-01 100.0% 97.3%
4976224 4953.1.1.0 beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like 0.67 52.0 4.72e-01 84.3% 78.9%
3980780 103.2.1.0 alpha arrays › RuvA-C › ATP cone › ATP cone 0.67 52.0 4.76e-01 82.9% 95.6%
4935021 4953.1.1.4 beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › ASL_C2 0.66 52.0 4.78e-01 84.3% 85.6%
5022467 5054.1.1.8 alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans_2 0.66 49.0 4.34e-01 85.7% 55.0%
2712025 308.2.1.0 a+b two layers › ClpS-like › Penicillin binding protein ClpS-like domain › Penicillin binding protein ClpS-like domain 0.66 55.0 5.46e-01 100.0% 97.3%
3280205 304.28.1.0 a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain 0.65 56.0 5.16e-01 100.0% 86.3%
3283392 308.2.1.0 a+b two layers › ClpS-like › Penicillin binding protein ClpS-like domain › Penicillin binding protein ClpS-like domain 0.65 53.0 5.38e-01 98.6% 95.7%
3231223 5054.1.1.0 alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels 0.61 48.0 3.63e-01 87.1% 59.4%
3641850 101.1.10.1 alpha arrays › HTH › HTH › Cyclin-like › Cyclin_N 0.61 49.0 3.97e-01 91.4% 64.1%
5041027 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.60 50.0 4.49e-01 90.0% 69.5%
4105204 304.24.1.3 a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › EFG_III 0.60 50.0 4.89e-01 100.0% 86.3%
4990625 304.1.1.1 a+b two layers › Alpha-beta plaits › GHMP Kinase, C-terminal domain › GHMP Kinase, C-terminal domain › GHMP_kinases_C 0.60 53.0 4.35e-01 100.0% 96.2%
3802452 2004.1.1.675 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_2, NBD_SMAX1 0.60 49.0 3.01e-01 90.0% 26.2%
5009299 304.1.1.1 a+b two layers › Alpha-beta plaits › GHMP Kinase, C-terminal domain › GHMP Kinase, C-terminal domain › GHMP_kinases_C 0.59 52.0 4.21e-01 100.0% 92.6%
5028844 304.7.1.0 a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors 0.57 49.0 4.81e-01 100.0% 92.0%
3590571 205.1.1.19 a+b two layers › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › Fer4_13 0.55 45.0 4.58e-01 100.0% 98.6%
4254733 2004.1.1.5 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran 0.53 42.0 3.02e-01 94.3% 28.0%
60261 166.1.1.0 alpha superhelices › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C 0.51 38.0 3.43e-01 92.9% 57.9%
4398165 166.1.1.1 alpha superhelices › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › DXPR_C 0.51 38.0 3.31e-01 94.3% 50.9%
5077228 102.2.1.15 alpha arrays › HhH/H2TH › H2TH › H2TH › Topo-VIb_trans 0.51 40.0 3.46e-01 92.9% 68.0%
3705115 2485.1.1.51 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin_14 0.51 38.0 2.77e-01 88.6% 56.9%
5051179 601.7.1.0 alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain 0.50 35.0 2.97e-01 74.3% 42.4%