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BML_08012017_9_75m_scaffold_2_prodigal-single.1__X__X__00202
Bact-VirBML_08012017_9_75m_scaffold_2_prodigal-single.1__X__X__00202
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-80
Domain cluster:
rep: term6_saliva_scaffold_1_curated_closed_complete_start-adj_prodigal-single.1__X__X__00164__D5-100
CATH (43)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4b1bA00 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.75 | 48.0 | 2.94e-01 | 100.0% | 11.7% |
| 2hgsA02 | 3.30.470.20 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain | 0.66 | 40.0 | 3.59e-01 | 100.0% | 44.1% |
| 2w3xB00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.64 | 43.0 | 3.52e-01 | 100.0% | 37.5% |
| 1zldA00 | 2.60.40.1920 | Mainly Beta › Sandwich › Immunoglobulin-like › Proteinaceous host-selective toxin ToxA | 0.63 | 41.0 | 3.77e-01 | 100.0% | 51.0% |
| 3w9kA00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.63 | 47.0 | 4.02e-01 | 82.3% | 65.9% |
| 1p9rA01 | 3.30.450.90 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › | 0.62 | 43.0 | 3.86e-01 | 94.9% | 51.4% |
| 3dghA03 | 3.30.390.30 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › FAD/NAD-linked reductase, C-terminal dimerisation domain | 0.61 | 48.0 | 4.18e-01 | 100.0% | 57.4% |
| 4kyzA00 | 3.30.70.600 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 | 0.60 | 46.0 | 3.67e-01 | 83.5% | 97.0% |
| 3rriA00 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.60 | 48.0 | 4.07e-01 | 87.3% | 92.4% |
| 1mtpA01 | 3.30.497.10 | Alpha Beta › 2-Layer Sandwich › Antithrombin; Chain I, domain 2 › Antithrombin, subunit I, domain 2 | 0.59 | 47.0 | 3.50e-01 | 91.1% | 85.5% |
| 7bjkA02 | 3.55.40.20 | Alpha Beta › 3-Layer(bab) Sandwich › minor pseudopilin epsh fold › Iron/manganese superoxide dismutase, C-terminal domain | 0.59 | 36.0 | 3.24e-01 | 87.3% | 41.6% |
| 2lnjA00 | 3.40.1000.10 | Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich | 0.58 | 47.0 | 3.82e-01 | 93.7% | 57.1% |
| 2il5A00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.58 | 44.0 | 3.61e-01 | 84.8% | 61.1% |
| 3l4gC04 | 3.30.930.10 | Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 | 0.58 | 49.0 | 3.48e-01 | 98.7% | 38.0% |
| 1dmlA00 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.58 | 41.0 | 2.87e-01 | 74.7% | 40.8% |
| 3d9wA02 | 2.40.128.150 | Mainly Beta › Beta Barrel › Lipocalin › Cysteine proteinases | 0.57 | 48.0 | 4.48e-01 | 96.2% | 93.1% |
| 2l8oA00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.56 | 43.0 | 3.59e-01 | 84.8% | 68.1% |
| 3wa5B00 | 2.60.120.1690 | Mainly Beta › Sandwich › Jelly Rolls › | 0.56 | 40.0 | 3.57e-01 | 78.5% | 100.0% |
| 2qpvA00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.56 | 42.0 | 3.68e-01 | 84.8% | 68.9% |
| 3zi1A02 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.55 | 46.0 | 3.80e-01 | 92.4% | 73.1% |
| 2eenA00 | 2.40.320.10 | Mainly Beta › Beta Barrel › Hypothetical Protein Pfu-838710-001 › Hypothetical Protein Pfu-838710-001 | 0.55 | 42.0 | 3.26e-01 | 82.3% | 72.3% |
| 1ms9A01 | 2.120.10.10 | Mainly Beta › 6 Propeller › Neuraminidase › | 0.55 | 42.0 | 2.74e-01 | 83.5% | 84.0% |
| 1xfsA00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.55 | 42.0 | 3.50e-01 | 87.3% | 68.2% |
| 4esqA00 | 3.40.1000.70 | Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › PknH-like extracellular domain | 0.54 | 46.0 | 3.61e-01 | 100.0% | 99.0% |
| 2o3bB00 | 3.40.1460.10 | Alpha Beta › 3-Layer(aba) Sandwich › Nuia › Nuclease A inhibitor-like | 0.54 | 47.0 | 4.01e-01 | 100.0% | 89.6% |
| 2dslA00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.54 | 36.0 | 3.22e-01 | 98.7% | 47.0% |
| 2leqA00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.54 | 41.0 | 3.45e-01 | 84.8% | 69.2% |
| 3cm1A00 | 2.30.31.20 | Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Sporulation-specific cell division protein SsgB | 0.54 | 46.0 | 3.84e-01 | 94.9% | 69.1% |
| 2v3sA00 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.54 | 44.0 | 4.25e-01 | 98.7% | 100.0% |
| 5a67A00 | 2.40.320.10 | Mainly Beta › Beta Barrel › Hypothetical Protein Pfu-838710-001 › Hypothetical Protein Pfu-838710-001 | 0.53 | 37.0 | 2.80e-01 | 72.2% | 35.9% |
| 5byuA00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.53 | 37.0 | 3.20e-01 | 72.2% | 99.2% |
| 1pzdA02 | 3.30.310.10 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein | 0.53 | 40.0 | 3.64e-01 | 84.8% | 59.1% |
| 3iwaA02 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.53 | 46.0 | 3.25e-01 | 94.9% | 48.9% |
| 3dpuB03 | 3.30.310.200 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › | 0.52 | 36.0 | 3.35e-01 | 83.5% | 53.7% |
| 7cu8E01 | 3.40.1000.70 | Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › PknH-like extracellular domain | 0.52 | 44.0 | 3.49e-01 | 98.7% | 99.5% |
| 3mfdA01 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.52 | 44.0 | 3.21e-01 | 97.5% | 82.6% |
| 3u0aA00 | 2.40.160.210 | Mainly Beta › Beta Barrel › Porin › Acyl-CoA thioesterase, double hotdog domain | 0.52 | 41.0 | 2.98e-01 | 89.9% | 42.2% |
| 3holA04 | 2.40.160.90 | Mainly Beta › Beta Barrel › Porin › | 0.51 | 43.0 | 3.67e-01 | 100.0% | 92.4% |
| 6cc0A01 | 3.30.450.80 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Transcription factor LuxR-like, autoinducer-binding domain | 0.51 | 41.0 | 3.36e-01 | 92.4% | 97.6% |
| 2w42B02 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.51 | 44.0 | 3.21e-01 | 100.0% | 82.3% |
| 1xkzC00 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.51 | 43.0 | 3.15e-01 | 100.0% | 71.4% |
| 3lbeB00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.50 | 36.0 | 3.24e-01 | 78.5% | 86.3% |
| 2lkoA00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.50 | 41.0 | 3.54e-01 | 94.9% | 60.1% |
ECOD (40)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3923241 | 10.4.1.1 ↗ | beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › CUB | 0.71 | 43.0 | 3.45e-01 | 100.0% | 32.0% |
| 3971583 | 881.1.1.0 ↗ | a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like | 0.61 | 47.0 | 3.98e-01 | 88.6% | 47.9% |
| 3396597 | 11.1.1.536 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF1091 | 0.60 | 55.0 | 4.23e-01 | 100.0% | 85.3% |
| 3624850 | 331.9.1.9 ↗ | a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain › PF26171 | 0.59 | 40.0 | 3.72e-01 | 83.5% | 54.3% |
| 3992138 | 11.2.1.52 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2_nem | 0.58 | 49.0 | 4.12e-01 | 98.7% | 98.0% |
| 3183643 | 243.9.1.4 ↗ | a+b two layers › Cystatin-like › Nuclease A inhibitor (NuiA)-related › Nuclease A inhibitor (NuiA)-related › NuiA_2 | 0.58 | 52.0 | 4.52e-01 | 100.0% | 84.9% |
| 3921426 | 264.2.1.1 ↗ | beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain › Topoisom_bac | 0.57 | 53.0 | 4.44e-01 | 100.0% | 95.4% |
| 3536489 | 331.9.1.5 ↗ | a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain › AP4E_app_platf | 0.57 | 40.0 | 3.73e-01 | 83.5% | 57.1% |
| 3689024 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.56 | 43.0 | 3.80e-01 | 87.3% | 99.2% |
| 3249011 | 11.2.1.1 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 | 0.56 | 42.0 | 3.53e-01 | 81.0% | 72.9% |
| 4030120 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.56 | 50.0 | 3.03e-01 | 97.5% | 16.8% |
| 5042268 | 264.2.1.0 ↗ | beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain | 0.56 | 52.0 | 4.51e-01 | 100.0% | 100.0% |
| 3948528 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.56 | 47.0 | 4.34e-01 | 100.0% | 100.0% |
| None | — | 0.55 | 40.0 | 2.66e-01 | 77.2% | 92.9% | |
| 4229467 | 331.9.1.7 ↗ | a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain › AP5B1_C | 0.55 | 38.0 | 3.42e-01 | 86.1% | 49.6% |
| 3734885 | 4121.1.1.0 ↗ | a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like | 0.55 | 44.0 | 3.02e-01 | 89.9% | 60.1% |
| 3966741 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.55 | 46.0 | 3.02e-01 | 92.4% | 32.6% |
| 1214527 | 211.1.1.0 ↗ | a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase | 0.54 | 39.0 | 4.16e-01 | 82.3% | 93.8% |
| 4947810 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.54 | 49.0 | 4.25e-01 | 100.0% | 68.3% |
| 5031820 | 264.2.1.0 ↗ | beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain | 0.54 | 50.0 | 4.30e-01 | 100.0% | 98.3% |
| 4135753 | 2004.1.1.42 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T2SSE | 0.54 | 45.0 | 2.95e-01 | 92.4% | 31.8% |
| 4438074 | 223.1.1.5 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › HrcA | 0.54 | 43.0 | 3.61e-01 | 89.9% | 98.6% |
| 4947508 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.54 | 48.0 | 4.10e-01 | 100.0% | 62.4% |
| 3639869 | 223.2.1.30 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › FNIP_N | 0.53 | 49.0 | 3.87e-01 | 100.0% | 54.5% |
| 3210750 | 223.2.1.48 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › FNIP_N, Longin_2 | 0.53 | 48.0 | 3.93e-01 | 100.0% | 57.5% |
| 4947839 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.53 | 48.0 | 4.10e-01 | 100.0% | 65.6% |
| 4981103 | 264.2.1.0 ↗ | beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain | 0.53 | 48.0 | 4.09e-01 | 100.0% | 96.0% |
| 3602503 | 264.2.1.1 ↗ | beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain › Topoisom_bac | 0.53 | 49.0 | 4.19e-01 | 100.0% | 99.2% |
| 4955532 | 244.2.1.0 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain | 0.53 | 44.0 | 4.43e-01 | 96.2% | 92.5% |
| 2554619 | 2004.1.1.42 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T2SSE | 0.53 | 43.0 | 2.85e-01 | 92.4% | 30.7% |
| 3963338 | 2004.1.1.42 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T2SSE | 0.53 | 44.0 | 2.83e-01 | 93.7% | 22.8% |
| 5049973 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.52 | 47.0 | 3.88e-01 | 100.0% | 58.6% |
| 4933037 | 264.2.1.0 ↗ | beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain | 0.52 | 47.0 | 3.99e-01 | 100.0% | 95.2% |
| 4972821 | 523.1.1.3 ↗ | a+b two layers › Ribosomal protein L9 C-domain › Ribosomal protein L9 C-domain › Ribosomal protein L9 C-domain › PF29994 | 0.51 | 41.0 | 3.64e-01 | 89.9% | 75.0% |
| 3593291 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.51 | 45.0 | 3.74e-01 | 100.0% | 60.0% |
| 3895559 | 10.2.1.5 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › TGFb_propeptide | 0.51 | 42.0 | 3.04e-01 | 100.0% | 30.4% |
| 4964696 | 220.1.1.219 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › CheF-arch | 0.51 | 44.0 | 3.97e-01 | 100.0% | 80.0% |
| 3672678 | 222.1.1.0 ↗ | a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase | 0.51 | 32.0 | 3.18e-01 | 98.7% | 58.8% |
| 4019656 | 220.1.1.211 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › DUF7612 | 0.51 | 43.0 | 3.69e-01 | 97.5% | 78.5% |
| 3915668 | 330.1.1.19 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › DSRM_2 | 0.50 | 34.0 | 3.35e-01 | 75.9% | 62.2% |