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BML_08012017_9_75m_scaffold_2_prodigal-single.1__X__X__00209
Bact-VirBML_08012017_9_75m_scaffold_2_prodigal-single.1__X__X__00209
Identity
- Kingdom:
- phage
Quality
95.2
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-70
Domain cluster:
representative
CATH (36)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1g8xA06 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.69 | 47.0 | 3.04e-01 | 71.0% | 22.3% |
| 6ui4A03 | 1.20.5.4820 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.67 | 47.0 | 4.44e-01 | 75.4% | 91.9% |
| 4byfA01 | 1.20.5.4820 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.64 | 44.0 | 4.10e-01 | 72.5% | 82.2% |
| 4e3qA02 | 3.40.640.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) | 0.64 | 52.0 | 3.46e-01 | 89.9% | 82.2% |
| 1d1rA00 | 3.30.780.10 | Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor Eif1 › SUI1-like domain | 0.62 | 52.0 | 5.01e-01 | 100.0% | 92.8% |
| 4ioyX02 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.60 | 45.0 | 3.84e-01 | 100.0% | 48.7% |
| 1zhvA00 | 3.30.2130.10 | Alpha Beta › 2-Layer Sandwich › VC0802-like › VC0802-like | 0.60 | 50.0 | 4.18e-01 | 100.0% | 94.0% |
| 4yhxA01 | 3.10.28.10 | Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases | 0.59 | 50.0 | 4.10e-01 | 100.0% | 87.2% |
| 4mo0A00 | 3.30.780.10 | Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor Eif1 › SUI1-like domain | 0.58 | 47.0 | 4.61e-01 | 95.7% | 96.2% |
| 4wrnA02 | 2.60.40.3210 | Mainly Beta › Sandwich › Immunoglobulin-like › Zona pellucida, ZP-N domain | 0.58 | 49.0 | 4.39e-01 | 100.0% | 92.4% |
| 4lowA00 | 3.30.1360.20 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Transcriptional coactivator/pterin dehydratase | 0.58 | 45.0 | 4.29e-01 | 88.4% | 94.0% |
| 3ir9A02 | 3.30.1330.30 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Ribosomal protein L30/S12 | 0.57 | 42.0 | 3.53e-01 | 79.7% | 76.7% |
| 2cs7A00 | 3.10.50.90 | Alpha Beta › Roll › Chitinase A; domain 3 › | 0.57 | 33.0 | 3.68e-01 | 95.7% | 72.7% |
| 1uu1B01 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.57 | 41.0 | 3.48e-01 | 81.2% | 47.3% |
| 3w3sA01 | 3.30.70.1920 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.56 | 43.0 | 3.40e-01 | 88.4% | 82.1% |
| 5vyeA01 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.56 | 44.0 | 3.95e-01 | 89.9% | 66.7% |
| 4alzA01 | 3.30.1340.30 | Alpha Beta › 2-Layer Sandwich › Histidine-containing Protein; Chain: A; › | 0.56 | 38.0 | 4.05e-01 | 71.0% | 93.5% |
| 1ab8A00 | 3.30.70.1230 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain | 0.55 | 42.0 | 3.32e-01 | 88.4% | 83.1% |
| 1yj7B01 | 3.30.70.1530 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Hypothetical protein rpa1041 | 0.55 | 40.0 | 3.98e-01 | 78.3% | 87.3% |
| 6u1vD02 | 2.40.110.10 | Mainly Beta › Beta Barrel › Butyryl-CoA Dehydrogenase, subunit A; domain 2 › Butyryl-CoA Dehydrogenase, subunit A, domain 2 | 0.55 | 38.0 | 3.31e-01 | 72.5% | 79.6% |
| 3cjxA01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.55 | 46.0 | 3.70e-01 | 98.6% | 97.3% |
| 4y4mC00 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.54 | 45.0 | 3.10e-01 | 94.2% | 66.3% |
| 5umsA02 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.54 | 39.0 | 3.52e-01 | 98.6% | 52.9% |
| 2ehpA00 | 3.40.120.10 | Alpha Beta › 3-Layer(aba) Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 3 › Alpha-D-Glucose-1,6-Bisphosphate, subunit A, domain 3 | 0.54 | 42.0 | 3.52e-01 | 87.0% | 86.3% |
| 4py9A02 | 3.10.310.30 | Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › | 0.54 | 42.0 | 3.53e-01 | 88.4% | 80.2% |
| 3vtiA03 | 3.90.870.40 | Alpha Beta › Alpha-Beta Complex › DHBP synthase › | 0.53 | 46.0 | 3.91e-01 | 100.0% | 74.4% |
| 3sonA00 | 3.90.79.10 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase | 0.53 | 43.0 | 3.41e-01 | 89.9% | 90.4% |
| 3gycA00 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.53 | 37.0 | 2.39e-01 | 75.4% | 43.8% |
| 3udcA03 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.52 | 37.0 | 3.49e-01 | 76.8% | 96.6% |
| 3l09A02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.52 | 32.0 | 3.08e-01 | 98.6% | 51.2% |
| 3ttcA01 | 3.90.870.30 | Alpha Beta › Alpha-Beta Complex › DHBP synthase › | 0.52 | 45.0 | 3.26e-01 | 100.0% | 45.4% |
| 4rm7A02 | 2.40.110.10 | Mainly Beta › Beta Barrel › Butyryl-CoA Dehydrogenase, subunit A; domain 2 › Butyryl-CoA Dehydrogenase, subunit A, domain 2 | 0.52 | 41.0 | 3.61e-01 | 89.9% | 90.8% |
| 2kdoA03 | 3.30.70.240 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.51 | 39.0 | 3.80e-01 | 87.0% | 85.0% |
| 5r4qA01 | 3.90.79.10 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase | 0.51 | 41.0 | 3.02e-01 | 89.9% | 73.6% |
| 3gz8C01 | 3.90.79.10 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase | 0.51 | 42.0 | 3.48e-01 | 97.1% | 95.6% |
| 8balC01 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.50 | 42.0 | 2.82e-01 | 100.0% | 45.5% |
ECOD (58)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3607481 | 810.1.1.0 ↗ | a+b two layers › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) | 0.68 | 54.0 | 4.08e-01 | 89.9% | 98.9% |
| 4956777 | 3696.1.1.0 ↗ | a+b two layers › DNA helicase UvsW N-terminal a+b domain-related › DNA helicase UvsW N-terminal a+b domain-related › DNA helicase UvsW N-terminal a+b domain-related | 0.67 | 57.0 | 5.49e-01 | 98.6% | 97.5% |
| 956550 | 242.3.1.1 ↗ | a+b two layers › Homing endonucleases-like › DNA repair protein MutS, domain I › DNA repair protein MutS, domain I › MutS_I | 0.67 | 61.0 | 5.34e-01 | 100.0% | 73.7% |
| 3991740 | 207.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats | 0.65 | 56.0 | 3.72e-01 | 100.0% | 34.2% |
| 4000154 | 242.3.1.1 ↗ | a+b two layers › Homing endonucleases-like › DNA repair protein MutS, domain I › DNA repair protein MutS, domain I › MutS_I | 0.65 | 57.0 | 4.81e-01 | 100.0% | 59.2% |
| 4966114 | 3696.1.1.0 ↗ | a+b two layers › DNA helicase UvsW N-terminal a+b domain-related › DNA helicase UvsW N-terminal a+b domain-related › DNA helicase UvsW N-terminal a+b domain-related | 0.63 | 53.0 | 5.37e-01 | 98.6% | 98.6% |
| 4983350 | 2004.1.1.120 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ResIII | 0.63 | 52.0 | 3.23e-01 | 97.1% | 14.4% |
| 4030338 | 601.23.1.1 ↗ | alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III › MutS_III | 0.62 | 43.0 | 2.68e-01 | 72.5% | 12.0% |
| 4937564 | 3696.1.1.0 ↗ | a+b two layers › DNA helicase UvsW N-terminal a+b domain-related › DNA helicase UvsW N-terminal a+b domain-related › DNA helicase UvsW N-terminal a+b domain-related | 0.62 | 52.0 | 5.17e-01 | 100.0% | 96.0% |
| 5583 | 306.3.1.1 ↗ | a+b two layers › Glucose permease domain IIB-like › eIF1-like › eIF1-like › SUI1 | 0.62 | 52.0 | 5.01e-01 | 100.0% | 92.8% |
| 5015316 | 3740.1.1.2 ↗ | alpha arrays › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › DUF2099 | 0.61 | 45.0 | 3.01e-01 | 78.3% | 85.6% |
| 5045179 | 3696.1.1.5 ↗ | a+b two layers › DNA helicase UvsW N-terminal a+b domain-related › DNA helicase UvsW N-terminal a+b domain-related › DNA helicase UvsW N-terminal a+b domain-related › Helicase_C_3 | 0.61 | 50.0 | 4.40e-01 | 98.6% | 60.9% |
| 3170634 | 601.23.1.1 ↗ | alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III › MutS_III | 0.60 | 41.0 | 2.64e-01 | 71.0% | 15.5% |
| 4956984 | 5104.1.1.1 ↗ | a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › DHHA1 | 0.60 | 48.0 | 4.24e-01 | 89.9% | 84.8% |
| 4946511 | 2003.1.2.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain | 0.60 | 44.0 | 2.83e-01 | 78.3% | 54.0% |
| 4421536 | 601.23.1.4 ↗ | alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III › MutS_IV, MutS_III | 0.60 | 41.0 | 2.70e-01 | 72.5% | 16.5% |
| 3781863 | 601.23.1.1 ↗ | alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III › MutS_III | 0.60 | 41.0 | 2.65e-01 | 71.0% | 15.2% |
| 4476959 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.60 | 40.0 | 2.31e-01 | 71.0% | 6.9% |
| 3948669 | 101.1.9.26 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › YfeC-like | 0.59 | 46.0 | 4.00e-01 | 88.4% | 57.4% |
| 4252702 | 601.23.1.4 ↗ | alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III › MutS_IV, MutS_III | 0.59 | 41.0 | 2.67e-01 | 72.5% | 16.4% |
| 3283649 | 3696.1.1.0 ↗ | a+b two layers › DNA helicase UvsW N-terminal a+b domain-related › DNA helicase UvsW N-terminal a+b domain-related › DNA helicase UvsW N-terminal a+b domain-related | 0.58 | 49.0 | 4.65e-01 | 98.6% | 81.2% |
| 5000489 | 5104.1.1.0 ↗ | a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases | 0.58 | 44.0 | 3.86e-01 | 87.0% | 76.5% |
| 3509103 | 221.4.1.18 ↗ | a+b two layers › beta-Grasp › Nudix › Nudix › NUDT9_N | 0.58 | 48.0 | 3.41e-01 | 98.6% | 47.6% |
| 3275147 | 304.107.1.0 ↗ | a+b two layers › Alpha-beta plaits › Aminomethyltransferase folate-binding domain › Aminomethyltransferase folate-binding domain | 0.58 | 48.0 | 3.36e-01 | 100.0% | 70.7% |
| 4153442 | 4099.1.1.0 ↗ | a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like | 0.58 | 45.0 | 3.83e-01 | 88.4% | 67.5% |
| 4418705 | 242.1.1.1 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_1 | 0.57 | 49.0 | 3.88e-01 | 100.0% | 80.0% |
| 5025092 | 304.7.1.0 ↗ | a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors | 0.57 | 47.0 | 4.60e-01 | 94.2% | 86.7% |
| 4992185 | 3696.1.1.0 ↗ | a+b two layers › DNA helicase UvsW N-terminal a+b domain-related › DNA helicase UvsW N-terminal a+b domain-related › DNA helicase UvsW N-terminal a+b domain-related | 0.57 | 48.0 | 4.39e-01 | 100.0% | 84.0% |
| 4967289 | 309.1.2.0 ↗ | a+b two layers › LuxS, MPP, ThrRS/AlaRS common domain › LuxS, MPP, ThrRS/AlaRS common domain › ThrRS/AlaRS editing domain | 0.57 | 44.0 | 3.51e-01 | 88.4% | 81.2% |
| 3706484 | 2484.1.1.15 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › GDA1_CD39 | 0.57 | 48.0 | 3.31e-01 | 100.0% | 61.8% |
| 4990495 | 306.6.1.0 ↗ | a+b two layers › Glucose permease domain IIB-like › PH0987 N-terminal domain-like › PH0987 N-terminal domain-like | 0.57 | 44.0 | 4.49e-01 | 87.0% | 93.8% |
| 3839289 | 304.54.1.0 ↗ | a+b two layers › Alpha-beta plaits › CcmK-like › CcmK-like | 0.57 | 47.0 | 4.54e-01 | 100.0% | 93.8% |
| 3946500 | 306.1.1.1 ↗ | a+b two layers › Glucose permease domain IIB-like › Glucose permease domain IIB › Glucose permease domain IIB › PTS_EIIB | 0.56 | 45.0 | 4.37e-01 | 92.8% | 77.5% |
| 3592409 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.56 | 48.0 | 3.34e-01 | 100.0% | 55.6% |
| 4987106 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.55 | 44.0 | 4.03e-01 | 89.9% | 78.9% |
| 5053627 | 601.23.1.1 ↗ | alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III › MutS_III | 0.55 | 44.0 | 2.92e-01 | 88.4% | 75.7% |
| 4122019 | 220.1.1.19 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › Rttp106-like_middle | 0.55 | 44.0 | 3.72e-01 | 98.6% | 52.2% |
| 1114523 | 3016.1.1.1 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › Aminotran_1_2 | 0.55 | 42.0 | 4.04e-01 | 88.4% | 73.3% |
| 3841722 | 3193.1.1.0 ↗ | alpha arrays › HopAB effectors Pto-binding domain-related › HopAB effectors Pto-binding domain-related › HopAB effectors Pto-binding domain-related | 0.55 | 44.0 | 4.48e-01 | 97.1% | 95.7% |
| 3813612 | 242.2.1.2 ↗ | a+b two layers › Homing endonucleases-like › tRNA-intron endonuclease N-terminal domain-like › tRNA-intron endonuclease N-terminal domain-like › tRNA_int_endo_N | 0.55 | 43.0 | 3.86e-01 | 100.0% | 58.2% |
| 3785188 | 101.1.2.183 ↗ | alpha arrays › HTH › HTH › winged helix domain › MUS81-like_WH | 0.55 | 44.0 | 3.91e-01 | 91.3% | 78.1% |
| 4947796 | 309.1.2.2 ↗ | a+b two layers › LuxS, MPP, ThrRS/AlaRS common domain › LuxS, MPP, ThrRS/AlaRS common domain › ThrRS/AlaRS editing domain › tRNA_bind_4 | 0.55 | 42.0 | 3.28e-01 | 88.4% | 78.3% |
| 3255991 | 601.23.1.4 ↗ | alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III › MutS_IV, MutS_III | 0.55 | 43.0 | 2.88e-01 | 89.9% | 71.6% |
| 2756225 | 2003.1.2.49 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_2+FAD_binding_3 | 0.54 | 45.0 | 3.50e-01 | 98.6% | 84.6% |
| 4037308 | 304.117.1.1 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in YebC › Ferredoxin-like domain in YebC › Transcrip_reg | 0.54 | 44.0 | 4.13e-01 | 91.3% | 83.5% |
| 3515653 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.54 | 44.0 | 4.22e-01 | 95.7% | 95.3% |
| 4063575 | 220.1.1.19 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › Rttp106-like_middle | 0.54 | 43.0 | 3.69e-01 | 100.0% | 53.9% |
| 3598503 | 2484.1.1.15 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › GDA1_CD39 | 0.54 | 44.0 | 3.13e-01 | 100.0% | 56.9% |
| 3385434 | 2484.1.1.261 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › PF27038 | 0.54 | 40.0 | 3.30e-01 | 100.0% | 41.4% |
| 4032926 | 306.1.1.0 ↗ | a+b two layers › Glucose permease domain IIB-like › Glucose permease domain IIB › Glucose permease domain IIB | 0.53 | 42.0 | 3.97e-01 | 91.3% | 71.8% |
| 3536880 | 601.23.1.4 ↗ | alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III › MutS_IV, MutS_III | 0.53 | 41.0 | 2.78e-01 | 91.3% | 65.2% |
| 4324737 | 306.1.1.0 ↗ | a+b two layers › Glucose permease domain IIB-like › Glucose permease domain IIB › Glucose permease domain IIB | 0.53 | 41.0 | 4.03e-01 | 92.8% | 78.7% |
| 4647466 | 601.23.1.4 ↗ | alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III › MutS_IV, MutS_III | 0.53 | 43.0 | 2.77e-01 | 88.4% | 68.9% |
| 4984434 | 304.3.1.0 ↗ | a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain | 0.52 | 40.0 | 4.15e-01 | 85.5% | 100.0% |
| 4580140 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.51 | 39.0 | 3.73e-01 | 87.0% | 69.4% |
| 5009387 | 304.3.1.0 ↗ | a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain | 0.51 | 39.0 | 4.10e-01 | 85.5% | 100.0% |
| 3472013 | 601.23.1.1 ↗ | alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III › MutS_III | 0.50 | 39.0 | 2.62e-01 | 89.9% | 69.8% |
| 3885542 | 327.16.1.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Ring-building motif II in type III secretion system › Ring-building motif II in type III secretion system | 0.50 | 36.0 | 3.73e-01 | 78.3% | 95.4% |
D2
high
residues 87-135
Domain cluster:
representative
CATH (44)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4o5vA03 | 2.30.30.90 | Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) | 0.76 | 65.0 | 5.74e-01 | 100.0% | 90.8% |
| 6o5cA02 | 2.30.30.90 | Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) | 0.75 | 64.0 | 5.60e-01 | 100.0% | 90.8% |
| 4g54A01 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.73 | 61.0 | 4.66e-01 | 100.0% | 47.2% |
| 3mhxB00 | 2.30.30.90 | Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) | 0.73 | 60.0 | 5.28e-01 | 100.0% | 90.1% |
| 2p84A02 | 2.30.30.290 | Mainly Beta › Roll › SH3 type barrels. › YopX-like domains | 0.73 | 64.0 | 5.61e-01 | 100.0% | 67.1% |
| 3bfmA02 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.71 | 53.0 | 5.55e-01 | 79.6% | 93.0% |
| 1jeyB02 | 2.40.290.10 | Mainly Beta › Beta Barrel › Ku70; Chain: A; Domain 2 › | 0.71 | 50.0 | 3.31e-01 | 75.5% | 90.0% |
| 6e55A01 | 2.30.30.90 | Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) | 0.71 | 54.0 | 4.82e-01 | 87.8% | 89.2% |
| 1bymA00 | 2.30.30.90 | Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) | 0.70 | 59.0 | 4.85e-01 | 100.0% | 77.3% |
| 3e19B01 | 2.30.30.90 | Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) | 0.70 | 54.0 | 5.03e-01 | 87.8% | 98.4% |
| 6bogA02 | 2.30.30.930 | Mainly Beta › Roll › SH3 type barrels. › | 0.69 | 59.0 | 5.52e-01 | 95.9% | 88.3% |
| 2gcjA01 | 2.30.29.150 | Mainly Beta › Roll › PH-domain like › | 0.69 | 56.0 | 4.17e-01 | 93.9% | 57.5% |
| 4ifsA01 | 2.30.29.150 | Mainly Beta › Roll › PH-domain like › | 0.69 | 55.0 | 4.15e-01 | 93.9% | 59.1% |
| 3hrsA02 | 2.30.30.90 | Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) | 0.69 | 56.0 | 5.05e-01 | 100.0% | 94.7% |
| 1ov3A02 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.68 | 53.0 | 5.17e-01 | 87.8% | 98.2% |
| 5o99A00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.67 | 54.0 | 5.09e-01 | 89.8% | 91.7% |
| 2yyzA02 | 2.40.50.100 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain | 0.66 | 48.0 | 4.55e-01 | 77.6% | 86.2% |
| 3qijB03 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.66 | 53.0 | 4.49e-01 | 93.9% | 74.2% |
| 2dmoA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.65 | 53.0 | 4.81e-01 | 91.8% | 82.4% |
| 2bzyA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.64 | 45.0 | 4.22e-01 | 79.6% | 59.7% |
| 6uzjA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.63 | 52.0 | 4.91e-01 | 98.0% | 96.8% |
| 4msxA02 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.63 | 52.0 | 3.28e-01 | 100.0% | 29.1% |
| 4czxA00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.63 | 51.0 | 3.10e-01 | 91.8% | 18.2% |
| 5cvmA00 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.62 | 51.0 | 3.20e-01 | 100.0% | 25.6% |
| 3ei3A02 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.61 | 46.0 | 2.87e-01 | 87.8% | 24.7% |
| 1g8jB00 | 2.102.10.10 | Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain | 0.61 | 47.0 | 3.66e-01 | 91.8% | 85.9% |
| 4r3dA03 | 2.60.120.1680 | Mainly Beta › Sandwich › Jelly Rolls › | 0.61 | 51.0 | 3.82e-01 | 100.0% | 36.5% |
| 3ottB02 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.61 | 49.0 | 3.03e-01 | 91.8% | 19.3% |
| 4whiA00 | 2.40.128.600 | Mainly Beta › Beta Barrel › Lipocalin › | 0.61 | 52.0 | 4.17e-01 | 100.0% | 84.3% |
| 2ktyA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.60 | 49.0 | 3.71e-01 | 98.0% | 73.9% |
| 5chtB00 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.60 | 50.0 | 3.13e-01 | 100.0% | 25.3% |
| 3d1cA01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.60 | 43.0 | 2.80e-01 | 79.6% | 59.7% |
| 2af5A01 | 2.40.128.160 | Mainly Beta › Beta Barrel › Lipocalin › C1 set domains (antibody constant domain-like) | 0.60 | 45.0 | 4.46e-01 | 85.7% | 87.0% |
| 4fk5A02 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.60 | 48.0 | 3.05e-01 | 100.0% | 22.8% |
| 6epkA02 | 3.30.67.10 | Alpha Beta › 2-Layer Sandwich › Viral Envelope Glycoprotein; domain 2 › Viral Envelope Glycoprotein, domain 2 | 0.59 | 46.0 | 4.24e-01 | 93.9% | 73.2% |
| 3p54A02 | 3.30.67.10 | Alpha Beta › 2-Layer Sandwich › Viral Envelope Glycoprotein; domain 2 › Viral Envelope Glycoprotein, domain 2 | 0.58 | 45.0 | 4.14e-01 | 93.9% | 70.4% |
| 8bs9A01 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.58 | 48.0 | 3.01e-01 | 100.0% | 24.3% |
| 2gfoA00 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.57 | 46.0 | 2.91e-01 | 100.0% | 21.5% |
| 4omfB02 | 3.10.450.750 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.57 | 44.0 | 4.50e-01 | 87.8% | 100.0% |
| 3ihpA03 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.57 | 48.0 | 2.97e-01 | 100.0% | 22.1% |
| 3agrA02 | 3.30.420.540 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › | 0.55 | 45.0 | 2.75e-01 | 95.9% | 56.0% |
| 1dq3A02 | 3.30.160.90 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.55 | 45.0 | 4.02e-01 | 98.0% | 89.5% |
| 3oymA01 | 1.10.340.70 | Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › | 0.55 | 46.0 | 3.78e-01 | 95.9% | 77.4% |
| 3e5zA00 | 2.120.10.30 | Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain | 0.53 | 42.0 | 2.75e-01 | 100.0% | 89.0% |
ECOD (45)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5008254 | 4.1.1.40 ↗ | beta barrels › SH3 › SH3 › SH3 › FeoA | 0.79 | 68.0 | 6.10e-01 | 100.0% | 98.6% |
| 3302818 | 4.1.1.236 ↗ | beta barrels › SH3 › SH3 › SH3 › KOWx_SPT5 | 0.78 | 70.0 | 6.76e-01 | 100.0% | 90.9% |
| 4453444 | 4.1.1.40 ↗ | beta barrels › SH3 › SH3 › SH3 › FeoA | 0.77 | 67.0 | 5.88e-01 | 100.0% | 93.3% |
| 4945288 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.76 | 60.0 | 6.37e-01 | 87.8% | 97.7% |
| 4993181 | 4.1.1.40 ↗ | beta barrels › SH3 › SH3 › SH3 › FeoA | 0.76 | 65.0 | 5.49e-01 | 100.0% | 83.5% |
| 5063688 | 4.1.1.40 ↗ | beta barrels › SH3 › SH3 › SH3 › FeoA | 0.76 | 64.0 | 5.38e-01 | 100.0% | 80.9% |
| 4989408 | 4.1.1.40 ↗ | beta barrels › SH3 › SH3 › SH3 › FeoA | 0.76 | 64.0 | 5.37e-01 | 100.0% | 78.7% |
| 4938404 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.75 | 63.0 | 6.08e-01 | 100.0% | 83.6% |
| 5025255 | 4.1.1.40 ↗ | beta barrels › SH3 › SH3 › SH3 › FeoA | 0.74 | 63.0 | 5.48e-01 | 100.0% | 86.3% |
| 3509362 | 220.1.1.160 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_MADD | 0.73 | 60.0 | 4.92e-01 | 93.9% | 74.5% |
| 3579987 | 220.1.1.160 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_MADD | 0.71 | 56.0 | 4.48e-01 | 93.9% | 63.6% |
| 3476015 | 220.1.1.160 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_MADD | 0.71 | 55.0 | 4.60e-01 | 91.8% | 72.6% |
| 1678740 | 4.1.1.40 ↗ | beta barrels › SH3 › SH3 › SH3 › FeoA | 0.70 | 58.0 | 5.14e-01 | 100.0% | 92.3% |
| None | — | 0.69 | 55.0 | 4.41e-01 | 91.8% | 65.7% | |
| 3497738 | 220.1.1.22 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C | 0.69 | 56.0 | 4.23e-01 | 93.9% | 51.5% |
| 3500471 | 220.1.1.22 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C | 0.69 | 53.0 | 4.07e-01 | 91.8% | 54.6% |
| None | — | 0.68 | 54.0 | 4.09e-01 | 91.8% | 53.1% | |
| 3925891 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.68 | 54.0 | 4.57e-01 | 93.9% | 78.9% |
| 3404845 | 220.1.1.22 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C | 0.68 | 54.0 | 4.47e-01 | 93.9% | 71.6% |
| None | — | 0.68 | 54.0 | 4.11e-01 | 93.9% | 53.8% | |
| 4931543 | 3740.1.1.4 ↗ | alpha arrays › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › FrhB_FdhB_C | 0.66 | 48.0 | 3.07e-01 | 79.6% | 39.5% |
| 3583597 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.65 | 56.0 | 4.66e-01 | 100.0% | 56.7% |
| 4406214 | 101.1.2.70 ↗ | alpha arrays › HTH › HTH › winged helix domain › PqqD | 0.63 | 44.0 | 3.67e-01 | 75.5% | 44.1% |
| 4992898 | 3740.1.1.4 ↗ | alpha arrays › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › FrhB_FdhB_C | 0.63 | 46.0 | 2.89e-01 | 79.6% | 53.8% |
| 3166921 | 219.1.1.3 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH | 0.62 | 52.0 | 3.20e-01 | 100.0% | 23.2% |
| 4000435 | 219.1.1.3 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH | 0.62 | 52.0 | 3.14e-01 | 100.0% | 19.7% |
| 4943857 | 3740.1.1.4 ↗ | alpha arrays › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › FrhB_FdhB_C | 0.62 | 46.0 | 2.97e-01 | 85.7% | 58.5% |
| 3412093 | 219.1.1.3 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH | 0.62 | 51.0 | 3.13e-01 | 100.0% | 25.2% |
| 1405143 | 9.4.1.2 ↗ | beta barrels › Lipocalins/Streptavidin › D-aminopeptidase, middle and C-terminal domains › D-aminopeptidase, middle and C-terminal domains › DUF3471 | 0.61 | 52.0 | 4.17e-01 | 100.0% | 84.3% |
| 3799652 | 4184.1.1.2 ↗ | beta barrels › MFPT repeat › MFPT repeat › MFPT repeat › MFP2b | 0.59 | 48.0 | 4.07e-01 | 100.0% | 64.2% |
| 3178434 | 219.1.1.3 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH | 0.59 | 49.0 | 3.00e-01 | 100.0% | 18.9% |
| 3679910 | 219.1.1.3 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH | 0.59 | 48.0 | 3.30e-01 | 100.0% | 36.2% |
| 3788099 | 219.1.1.3 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH | 0.59 | 49.0 | 2.94e-01 | 100.0% | 23.6% |
| 4078246 | 9.4.1.1 ↗ | beta barrels › Lipocalins/Streptavidin › D-aminopeptidase, middle and C-terminal domains › D-aminopeptidase, middle and C-terminal domains › DAP_B | 0.59 | 49.0 | 4.35e-01 | 98.0% | 76.0% |
| 3600084 | 219.1.1.0 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases | 0.59 | 47.0 | 3.03e-01 | 100.0% | 36.1% |
| 3932677 | 219.1.1.3 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH | 0.58 | 48.0 | 3.54e-01 | 100.0% | 42.3% |
| 3890729 | 219.1.1.3 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH | 0.57 | 46.0 | 2.81e-01 | 100.0% | 24.4% |
| 4453958 | 274.1.1.23 ↗ | a+b two layers › Pili subunits › Pili subunits › Pili subunits › DUF5374 | 0.57 | 41.0 | 3.91e-01 | 79.6% | 68.3% |
| 4370909 | 9.4.1.1 ↗ | beta barrels › Lipocalins/Streptavidin › D-aminopeptidase, middle and C-terminal domains › D-aminopeptidase, middle and C-terminal domains › DAP_B | 0.57 | 48.0 | 4.05e-01 | 100.0% | 83.3% |
| 3482451 | 10.1.1.17 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 | 0.55 | 47.0 | 3.21e-01 | 100.0% | 61.1% |
| 3406773 | 241.10.1.1 ↗ | a+b two layers › Type III secretory system chaperone-like › GAS2 domain › GAS2 domain › GAS2 | 0.53 | 42.0 | 3.88e-01 | 93.9% | 91.4% |
| 3783302 | 10.13.1.1 ↗ | beta sandwiches › jelly-roll › Calcium ATPase, transduction domain A › Calcium ATPase, transduction domain A › E1-E2_ATPase | 0.53 | 36.0 | 2.50e-01 | 77.6% | 31.4% |
| 5014638 | 10.1.1.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases | 0.52 | 41.0 | 3.10e-01 | 100.0% | 57.3% |
| 3421072 | 1.1.1.30 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease › PF30863 | 0.51 | 41.0 | 3.23e-01 | 93.9% | 58.3% |
| 3260781 | 241.10.1.1 ↗ | a+b two layers › Type III secretory system chaperone-like › GAS2 domain › GAS2 domain › GAS2 | 0.51 | 38.0 | 3.59e-01 | 91.8% | 85.7% |