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BML_08012017_9_75m_scaffold_2_prodigal-single.1__X__X__00249

Bact-Vir

BML_08012017_9_75m_scaffold_2_prodigal-single.1__X__X__00249

Identity

Kingdom:
phage

Quality

80.3 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-58
PDB
CATH (40)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3pieA02 3.30.1370.250 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › 0.65 50.0 4.20e-01 87.3% 48.0%
1kafA00 3.90.1150.20 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Transcription regulator MotA, C-terminal domain 0.65 44.0 3.55e-01 87.3% 36.1%
2e9yB00 3.40.1160.10 Alpha Beta › 3-Layer(aba) Sandwich › Carbamate kinase › Acetylglutamate kinase-like 0.63 42.0 2.68e-01 89.1% 12.5%
1konA03 3.30.70.980 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › YebC, transcriptional regulation domain 0.63 46.0 4.18e-01 90.9% 57.3%
3euhD01 1.10.10.2250 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.63 46.0 4.34e-01 81.8% 67.1%
2b30A02 3.30.1240.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › 0.60 44.0 3.59e-01 83.6% 40.4%
3anqD01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.58 48.0 4.13e-01 100.0% 57.7%
2n0kA00 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.58 44.0 3.82e-01 83.6% 84.3%
1xkpC00 3.30.1460.10 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.58 48.0 3.83e-01 100.0% 48.4%
2q4aA00 3.60.130.10 Alpha Beta › 4-Layer Sandwich › Double-stranded beta-helix › Clavaminate synthase-like 0.57 41.0 2.66e-01 81.8% 17.1%
4ydzA00 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.57 45.0 3.41e-01 85.5% 55.6%
3jcmH04 3.30.70.870 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Elongation Factor G (Translational Gtpase), domain 3 0.57 44.0 4.00e-01 89.1% 62.3%
3kdgA02 3.30.1370.100 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › MutL, C-terminal domain, regulatory subdomain 0.57 41.0 3.58e-01 85.5% 47.9%
2cpqA01 3.30.1370.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 0.57 42.0 4.11e-01 87.3% 79.7%
2pt7G02 3.30.1370.180 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › 0.56 40.0 3.84e-01 78.2% 65.7%
1x8bA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.56 46.0 4.13e-01 98.2% 92.9%
2bolA03 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.56 46.0 4.01e-01 100.0% 88.2%
3ezjA02 3.30.1370.120 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › 0.55 41.0 3.89e-01 85.5% 67.6%
1qysA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.55 42.0 3.59e-01 83.6% 51.1%
4qmfB01 3.30.1370.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 0.55 40.0 3.68e-01 85.5% 58.5%
1zvpD00 3.30.2130.10 Alpha Beta › 2-Layer Sandwich › VC0802-like › VC0802-like 0.55 45.0 3.57e-01 100.0% 71.8%
4aimA03 3.30.1370.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 0.55 44.0 4.15e-01 100.0% 74.6%
2xmjA00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.54 39.0 3.78e-01 80.0% 69.8%
1jkzA00 3.30.30.10 Alpha Beta › 2-Layer Sandwich › Defensin A-like › Knottin, scorpion toxin-like 0.53 40.0 4.22e-01 87.3% 97.8%
2v1nA01 1.10.10.2030 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › DNA/RNA-binding protein Kin17, conserved domain 0.53 39.0 3.31e-01 81.8% 67.3%
1azsA00 3.30.70.1230 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain 0.53 41.0 3.00e-01 92.7% 34.7%
2nooA01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.53 34.0 2.29e-01 80.0% 13.8%
3nftA00 1.20.1710.10 Mainly Alpha › Up-down Bundle › IpaD-like › IpaD-like 0.53 36.0 2.32e-01 85.5% 14.9%
3ofgB00 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.53 40.0 3.54e-01 87.3% 65.5%
1rniA02 3.30.2250.10 Alpha Beta › 2-Layer Sandwich › Prim-pol fold › Bifunctional DNA primase/polymerase domain 0.52 46.0 3.64e-01 100.0% 71.3%
5trdA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 38.0 3.41e-01 81.8% 57.1%
2p4gA00 3.40.430.10 Alpha Beta › 3-Layer(aba) Sandwich › Dihydrofolate Reductase, subunit A › Dihydrofolate Reductase, subunit A 0.52 36.0 2.44e-01 74.5% 52.4%
2hqrA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 37.0 3.17e-01 81.8% 57.5%
1usmA00 3.30.1360.20 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Transcriptional coactivator/pterin dehydratase 0.51 38.0 3.56e-01 100.0% 62.3%
4yhxA01 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.51 44.0 3.34e-01 100.0% 40.4%
1nf2A02 3.30.1240.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › 0.51 44.0 3.59e-01 100.0% 100.0%
4h5bA00 3.30.1460.70 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.51 41.0 3.17e-01 100.0% 38.8%
3mahA02 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.51 37.0 3.58e-01 85.5% 68.1%
2l02A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.50 39.0 3.53e-01 90.9% 62.2%
6u9hF02 3.30.70.1150 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT-like. Chain A, domain 2 0.50 35.0 3.21e-01 83.6% 53.2%
ECOD (54)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3519123 304.169.1.3 a+b two layers › Alpha-beta plaits › RspWYL1 C-terminal domain › RspWYL1 C-terminal domain › WCX 0.68 41.0 3.51e-01 81.8% 36.7%
3931636 327.11.2.0 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) 0.65 48.0 4.68e-01 81.8% 73.3%
4080258 304.117.1.1 a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in YebC › Ferredoxin-like domain in YebC › Transcrip_reg 0.64 47.0 4.32e-01 90.9% 58.7%
3735034 390.1.1.0 few secondary structure elements › Hairpin loop containing domain-like › Hairpin loop containing domain-like › Hairpin loop containing domain-like 0.64 54.0 4.70e-01 94.5% 62.4%
4029258 327.11.2.1 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1 0.64 47.0 4.45e-01 83.6% 70.0%
4403260 304.117.1.1 a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in YebC › Ferredoxin-like domain in YebC › Transcrip_reg 0.64 47.0 4.27e-01 90.9% 58.7%
3378382 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.63 47.0 3.60e-01 85.5% 32.9%
3784067 320.1.1.0 a+b two layers › R3H domain-like › R3H domain › R3H domain 0.62 45.0 3.60e-01 100.0% 36.7%
5058294 304.24.1.6 a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › SBDS_C 0.62 43.0 4.04e-01 83.6% 57.1%
3639962 320.1.1.0 a+b two layers › R3H domain-like › R3H domain › R3H domain 0.62 50.0 4.28e-01 87.3% 60.0%
3382880 327.11.2.1 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1 0.62 47.0 4.35e-01 87.3% 66.7%
4289242 327.19.1.0 a+b two layers › Alpha-lytic protease prodomain-like › DNA mismatch repair protein MutL regulatory subdomain › DNA mismatch repair protein MutL regulatory subdomain 0.61 43.0 3.94e-01 83.6% 53.8%
3624413 320.1.1.0 a+b two layers › R3H domain-like › R3H domain › R3H domain 0.61 44.0 4.25e-01 83.6% 67.7%
4351112 327.11.2.1 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1 0.60 45.0 4.21e-01 87.3% 65.3%
3962151 327.11.2.1 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1 0.60 49.0 4.42e-01 100.0% 72.9%
3218171 327.11.2.0 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) 0.60 45.0 4.19e-01 87.3% 65.3%
4022173 320.1.1.0 a+b two layers › R3H domain-like › R3H domain › R3H domain 0.60 43.0 4.14e-01 83.6% 67.7%
3706937 304.24.1.3 a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › EFG_III 0.59 46.0 4.74e-01 89.1% 90.6%
4052470 327.19.1.1 a+b two layers › Alpha-lytic protease prodomain-like › DNA mismatch repair protein MutL regulatory subdomain › DNA mismatch repair protein MutL regulatory subdomain › MutL_C 0.59 41.0 3.71e-01 100.0% 49.4%
4248104 327.11.2.1 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1 0.59 45.0 4.18e-01 87.3% 65.3%
3997731 304.24.1.0 a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like 0.59 47.0 4.23e-01 89.1% 61.3%
3840480 327.11.2.39 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_PARP14_3 0.58 44.0 4.06e-01 85.5% 64.0%
3695323 327.11.2.1 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1 0.58 44.0 4.01e-01 87.3% 60.0%
5052581 242.2.1.2 a+b two layers › Homing endonucleases-like › tRNA-intron endonuclease N-terminal domain-like › tRNA-intron endonuclease N-terminal domain-like › tRNA_int_endo_N 0.58 39.0 3.43e-01 100.0% 45.9%
3601388 304.24.1.0 a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like 0.57 45.0 4.12e-01 89.1% 64.0%
3474714 327.11.2.0 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) 0.57 42.0 4.10e-01 85.5% 75.4%
4027427 304.24.1.0 a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like 0.57 44.0 4.07e-01 89.1% 64.0%
3281775 221.1.1.161 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › DUF5703 0.56 42.0 4.39e-01 83.6% 92.0%
3931590 207.1.1.156 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › PF27094 0.56 41.0 2.74e-01 81.8% 19.6%
3304324 101.1.2.106 alpha arrays › HTH › HTH › winged helix domain › Tam41_Mmp37 0.56 43.0 3.24e-01 83.6% 55.6%
5045407 241.1.1.0 a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone 0.56 45.0 3.64e-01 100.0% 44.6%
3958644 256.1.1.2 a+b two layers › MTH1598-like › MTH1598-like › MTH1598-like › DUF5703 0.56 47.0 4.53e-01 98.2% 90.8%
4310337 304.117.1.0 a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in YebC › Ferredoxin-like domain in YebC 0.56 39.0 3.66e-01 85.5% 58.6%
3661880 390.1.1.6 few secondary structure elements › Hairpin loop containing domain-like › Hairpin loop containing domain-like › Hairpin loop containing domain-like › PAN_2 0.56 44.0 4.26e-01 94.5% 78.5%
4171943 327.11.2.1 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1 0.55 45.0 4.33e-01 100.0% 81.5%
3236950 320.1.1.0 a+b two layers › R3H domain-like › R3H domain › R3H domain 0.55 41.0 3.88e-01 83.6% 68.6%
4933548 4955.1.1.0 a+b two layers › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit 0.55 39.0 3.48e-01 83.6% 51.2%
4157635 4023.1.1.1 a+b two layers › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › DNAG_N 0.54 37.0 2.96e-01 72.7% 84.0%
3455220 3012.1.1.4 a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain › Hydrolase_3 0.54 45.0 3.88e-01 100.0% 57.8%
5010660 304.28.1.38 a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain › CAA_C 0.54 43.0 3.27e-01 94.5% 41.9%
5070705 11.1.1.1402 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › A2M_recep 0.54 39.0 3.17e-01 87.3% 37.5%
3939270 207.1.1.156 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › PF27094 0.53 38.0 2.62e-01 81.8% 19.6%
3356626 304.48.1.21 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › Thg1,Thg1C 0.53 40.0 3.01e-01 87.3% 33.1%
3613623 304.34.1.0 a+b two layers › Alpha-beta plaits › Nucleoside diphosphate kinases › Nucleoside diphosphate kinases 0.53 39.0 3.03e-01 87.3% 52.0%
3969148 305.2.1.1 a+b two layers › DCoH-like › Pterin-4a-carbinolamine dehydratase (PCD)/dimerization cofactor of HNF1 (DCoH) › Pterin-4a-carbinolamine dehydratase (PCD)/dimerization cofactor of HNF1 (DCoH) › Pterin_4a 0.51 40.0 3.46e-01 100.0% 51.4%
4645295 2003.1.5.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases 0.51 43.0 3.47e-01 100.0% 78.3%
4069390 305.2.1.1 a+b two layers › DCoH-like › Pterin-4a-carbinolamine dehydratase (PCD)/dimerization cofactor of HNF1 (DCoH) › Pterin-4a-carbinolamine dehydratase (PCD)/dimerization cofactor of HNF1 (DCoH) › Pterin_4a 0.51 40.0 3.54e-01 100.0% 56.8%
3702006 304.9.1.0 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.51 37.0 3.66e-01 85.5% 73.3%
3486417 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.51 36.0 3.55e-01 80.0% 70.0%
4806761 2002.1.1.0 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels 0.51 41.0 3.51e-01 100.0% 65.7%
5029570 305.2.1.1 a+b two layers › DCoH-like › Pterin-4a-carbinolamine dehydratase (PCD)/dimerization cofactor of HNF1 (DCoH) › Pterin-4a-carbinolamine dehydratase (PCD)/dimerization cofactor of HNF1 (DCoH) › Pterin_4a 0.51 41.0 3.50e-01 100.0% 53.7%
3792160 328.7.1.0 a+b two layers › IF3-like › Smr domain › Smr domain 0.51 42.0 3.51e-01 100.0% 100.0%
4650786 2003.1.5.89 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Anamorsin_N 0.50 42.0 3.33e-01 100.0% 52.0%
3896468 864.1.1.0 a+b two layers › DLC › DLC › DLC 0.50 44.0 3.90e-01 100.0% 73.8%