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BML_08012017_9_75m_scaffold_2_prodigal-single.1__X__X__00258
Bact-VirBML_08012017_9_75m_scaffold_2_prodigal-single.1__X__X__00258
Identity
- Kingdom:
- phage
Quality
87.4
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 4-61
Domain cluster:
representative
CATH (17)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2l72A00 | 3.40.20.10 | Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin | 0.69 | 60.0 | 4.73e-01 | 96.6% | 77.1% |
| 7b7nH01 | 2.60.40.3190 | Mainly Beta › Sandwich › Immunoglobulin-like › Herpesvirus glycoprotein H, C-terminal domain | 0.65 | 46.0 | 3.59e-01 | 75.9% | 42.5% |
| 1r3nG01 | 3.40.630.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases | 0.63 | 42.0 | 2.69e-01 | 70.7% | 46.5% |
| 1wh2A01 | 3.30.1490.40 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › GYF domain | 0.59 | 49.0 | 4.93e-01 | 100.0% | 95.1% |
| 6toaE01 | 2.40.10.270 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Bacteriophage SPP1 head-tail adaptor protein | 0.59 | 51.0 | 4.32e-01 | 100.0% | 89.8% |
| 2it9A00 | 2.30.31.10 | Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A | 0.58 | 40.0 | 3.29e-01 | 74.1% | 66.7% |
| 4cbpB02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.58 | 43.0 | 3.62e-01 | 82.8% | 52.9% |
| 1ywlA00 | 3.40.1440.10 | Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › GIY-YIG endonuclease | 0.57 | 38.0 | 3.35e-01 | 70.7% | 50.0% |
| 3w20A00 | 2.60.120.620 | Mainly Beta › Sandwich › Jelly Rolls › q2cbj1_9rhob like domain | 0.56 | 48.0 | 3.19e-01 | 98.3% | 97.2% |
| 1eslA00 | 3.10.100.10 | Alpha Beta › Roll › Mannose-Binding Protein A; Chain A › Mannose-Binding Protein A, subunit A | 0.56 | 43.0 | 3.29e-01 | 89.7% | 63.1% |
| 4n06A02 | 1.20.120.920 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CRISPR-associated endonuclease Cas1, C-terminal domain | 0.55 | 37.0 | 2.47e-01 | 70.7% | 85.6% |
| 1hx6A02 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.55 | 44.0 | 3.48e-01 | 94.8% | 46.1% |
| 5hvqC02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.55 | 38.0 | 3.32e-01 | 75.9% | 76.5% |
| 1txgA01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.54 | 40.0 | 2.92e-01 | 84.5% | 69.4% |
| 3k8pC01 | 1.20.58.1440 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.51 | 41.0 | 3.51e-01 | 93.1% | 85.7% |
| 1md6A00 | 2.80.10.50 | Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › | 0.51 | 36.0 | 2.62e-01 | 74.1% | 48.7% |
| 1epfA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.50 | 37.0 | 3.31e-01 | 86.2% | 64.6% |
ECOD (16)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3227231 | 822.1.1.1 ↗ | a+b two layers › GYF/BRK domain-like › GYF domain › GYF domain › GYF | 0.65 | 53.0 | 5.26e-01 | 96.6% | 90.5% |
| 3738773 | 822.1.1.1 ↗ | a+b two layers › GYF/BRK domain-like › GYF domain › GYF domain › GYF | 0.64 | 52.0 | 5.35e-01 | 91.4% | 98.2% |
| 3295690 | 822.1.1.2 ↗ | a+b two layers › GYF/BRK domain-like › GYF domain › GYF domain › GYF_2 | 0.62 | 53.0 | 5.16e-01 | 100.0% | 92.3% |
| None | — | 0.61 | 33.0 | 3.35e-01 | 93.1% | 47.5% | |
| 4024679 | 822.1.1.1 ↗ | a+b two layers › GYF/BRK domain-like › GYF domain › GYF domain › GYF | 0.61 | 50.0 | 5.05e-01 | 96.6% | 95.0% |
| 4028910 | 822.1.1.1 ↗ | a+b two layers › GYF/BRK domain-like › GYF domain › GYF domain › GYF | 0.61 | 51.0 | 4.96e-01 | 98.3% | 87.7% |
| 3323055 | 822.1.1.0 ↗ | a+b two layers › GYF/BRK domain-like › GYF domain › GYF domain | 0.61 | 49.0 | 4.82e-01 | 93.1% | 86.2% |
| 3787008 | 822.1.1.1 ↗ | a+b two layers › GYF/BRK domain-like › GYF domain › GYF domain › GYF | 0.61 | 50.0 | 4.88e-01 | 96.6% | 89.1% |
| 5062870 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.60 | 42.0 | 3.79e-01 | 77.6% | 62.2% |
| 4001382 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.59 | 39.0 | 4.43e-01 | 70.7% | 95.0% |
| 3277842 | 4187.1.1.1 ↗ | a+b two layers › NosL/MerB-like › NosL/MerB-like › NosL/MerB-like › MerB | 0.59 | 46.0 | 4.56e-01 | 89.7% | 90.0% |
| 2637734 | 109.4.1.165 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Dsl1_C | 0.56 | 43.0 | 2.83e-01 | 87.9% | 34.9% |
| 3281348 | 4221.1.1.0 ↗ | a+b two layers › YkuJ-like › YkuJ-like › YkuJ-like | 0.56 | 46.0 | 3.87e-01 | 93.1% | 80.0% |
| 3405623 | 376.1.1.1 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 | 0.55 | 37.0 | 3.19e-01 | 70.7% | 47.4% |
| 4022395 | 376.1.1.1 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 | 0.52 | 35.0 | 3.43e-01 | 70.7% | 69.2% |
| 3240279 | 376.1.1.20 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_UBOX | 0.52 | 35.0 | 3.15e-01 | 70.7% | 58.8% |