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BML_08012017_9_75m_scaffold_2_prodigal-single.1__X__X__00293

Bact-Vir

BML_08012017_9_75m_scaffold_2_prodigal-single.1__X__X__00293

Identity

Kingdom:
phage

Quality

91.0 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 22-123_164-257
PDB
CATH (75)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4rshA00 3.40.50.1110 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase 0.84 67.0 7.09e-01 81.1% 100.0%
6hfzA01 3.40.50.1110 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase 0.82 67.0 6.52e-01 84.7% 86.9%
1ivnA00 3.40.50.1110 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase 0.82 67.0 7.01e-01 84.2% 100.0%
2vptA00 3.40.50.1110 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase 0.81 66.0 6.62e-01 84.7% 98.5%
2wabA02 3.40.50.1110 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase 0.81 67.0 6.49e-01 85.2% 100.0%
3rjtA00 3.40.50.1110 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase 0.80 66.0 6.37e-01 83.7% 97.7%
7br2D01 3.40.50.1110 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase 0.80 64.0 6.19e-01 82.1% 95.4%
4q9aA00 3.40.50.1110 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase 0.80 65.0 6.29e-01 84.2% 96.8%
4rw0A00 3.40.50.1110 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase 0.80 66.0 6.80e-01 85.2% 100.0%
1yzfA00 3.40.50.1110 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase 0.79 65.0 6.53e-01 84.7% 97.4%
1zmbA01 3.40.50.1110 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase 0.78 63.0 5.80e-01 83.2% 91.9%
5ibqA01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.75 48.0 5.69e-01 85.2% 92.5%
3p94A00 3.40.50.1110 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase 0.75 65.0 6.46e-01 90.3% 96.1%
3gv0A01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.73 47.0 5.51e-01 85.2% 91.2%
4p1zA00 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.71 43.0 5.21e-01 84.7% 91.3%
2b99C00 3.40.50.960 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Lumazine/riboflavin synthase 0.71 48.0 5.45e-01 84.7% 88.8%
1eucB03 3.40.50.261 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Succinyl-CoA synthetase domains 0.69 50.0 5.74e-01 99.0% 98.6%
4joqA01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.69 46.0 5.39e-01 84.2% 93.6%
3bblA01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.69 45.0 5.25e-01 85.2% 92.0%
2hsjD00 3.40.50.1110 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase 0.68 64.0 6.24e-01 99.0% 93.5%
1di0A00 3.40.50.960 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Lumazine/riboflavin synthase 0.68 49.0 5.52e-01 84.7% 95.9%
1c2yA00 3.40.50.960 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Lumazine/riboflavin synthase 0.67 47.0 5.24e-01 85.2% 89.7%
3d8uB02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.66 44.0 4.93e-01 83.7% 86.7%
3f9iA00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.65 53.0 5.12e-01 85.2% 92.3%
4f6cB00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.64 52.0 4.15e-01 83.7% 66.3%
6fxsA00 3.40.1400.10 Alpha Beta › 3-Layer(aba) Sandwich › Ribose 5-phosphate Isomerase B; Chain: A, › Sugar-phosphate isomerase, RpiB/LacA/LacB 0.62 42.0 4.72e-01 85.2% 89.3%
2bkaA00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.62 50.0 4.72e-01 84.2% 89.2%
2zc0A02 3.40.640.10 Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) 0.61 45.0 4.32e-01 84.7% 65.5%
6feaB01 3.40.50.1980 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain 0.61 41.0 4.73e-01 84.7% 91.1%
3jzmA02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.59 47.0 4.35e-01 82.1% 71.8%
3io3A01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.59 46.0 4.42e-01 81.1% 87.4%
8db3B02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.59 46.0 4.57e-01 80.6% 76.4%
2e87A02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.59 49.0 4.96e-01 87.2% 90.3%
1gqyB02 3.40.1190.10 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain 0.59 48.0 4.70e-01 87.2% 92.6%
3dmyA03 3.40.50.261 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Succinyl-CoA synthetase domains 0.59 47.0 5.07e-01 83.7% 99.4%
1ihcA00 3.40.980.10 Alpha Beta › 3-Layer(aba) Sandwich › Molybdenum Cofactor Biosythetic Enzyme; Chain A › MoaB/Mog-like domain 0.58 44.0 4.70e-01 85.2% 90.5%
1z06A00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.58 45.0 4.85e-01 81.1% 100.0%
2bgwB01 3.40.50.10130 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.56 37.0 4.45e-01 84.7% 99.2%
1aq0A00 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.56 46.0 3.98e-01 86.2% 93.8%
2derB01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.56 34.0 3.45e-01 84.7% 57.6%
4ydsA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.56 43.0 4.14e-01 80.1% 76.5%
2w0mA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.56 43.0 4.21e-01 80.6% 75.0%
1zu4A02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.56 43.0 4.19e-01 80.6% 91.3%
4tl8F00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.55 43.0 4.25e-01 82.7% 76.1%
7xg9A01 3.20.20.220 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › 0.54 45.0 3.99e-01 87.8% 90.1%
3lrkA01 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.54 47.0 4.14e-01 92.9% 96.2%
4aw7A02 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.54 44.0 3.74e-01 86.2% 76.6%
4htyA00 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.54 48.0 4.07e-01 96.9% 100.0%
1l9xA00 3.40.50.880 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Class I glutamine amidotransferase (GATase) domain 0.54 44.0 3.86e-01 85.2% 86.1%
2p9bA03 3.40.50.10910 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Amidohydrolase 0.54 34.0 4.21e-01 80.1% 100.0%
6ovqA00 3.20.20.100 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › NADP-dependent oxidoreductase domain 0.53 46.0 3.97e-01 92.3% 79.8%
3erpA01 3.20.20.100 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › NADP-dependent oxidoreductase domain 0.53 46.0 4.02e-01 93.4% 80.3%
6jixA02 3.40.640.10 Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) 0.53 42.0 3.82e-01 84.2% 63.3%
1hjrA00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.53 41.0 4.45e-01 83.2% 99.4%
2pljA02 3.20.20.10 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Alanine racemase 0.53 40.0 3.81e-01 77.6% 79.0%
2p14A00 3.40.91.50 Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › 0.53 41.0 4.27e-01 92.9% 86.0%
1g5cA00 3.40.1050.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-carbonic Anhydrase; Chain A › Carbonic anhydrase 0.53 40.0 4.34e-01 91.3% 92.3%
4r33A00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.53 47.0 3.78e-01 96.9% 76.8%
4ovxA00 3.20.20.150 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Divalent-metal-dependent TIM barrel enzymes 0.52 45.0 4.09e-01 92.3% 93.0%
2nxfA01 3.60.21.10 Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases 0.52 43.0 3.69e-01 85.2% 97.4%
4j3vA03 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.52 47.0 3.34e-01 97.4% 88.8%
3mnfA00 3.40.50.10900 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › PAC-like subunit 0.52 41.0 3.83e-01 81.1% 86.4%
4ep4A00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.52 41.0 4.36e-01 82.7% 98.2%
2cjgA02 3.40.640.10 Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) 0.52 41.0 3.67e-01 85.2% 58.7%
3fndA01 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.51 45.0 4.08e-01 94.4% 92.9%
2chrA02 3.20.20.120 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Enolase-like C-terminal domain 0.51 43.0 4.31e-01 89.8% 90.6%
3lyeA00 3.20.20.60 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Phosphoenolpyruvate-binding domains 0.51 45.0 3.95e-01 94.4% 71.6%
2dskA00 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.51 45.0 3.93e-01 95.9% 92.0%
4rctA01 3.30.870.10 Alpha Beta › 2-Layer Sandwich › Endonuclease; Chain A › Endonuclease Chain A 0.51 39.0 4.03e-01 94.4% 84.3%
7exbA01 3.20.20.150 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Divalent-metal-dependent TIM barrel enzymes 0.51 43.0 3.88e-01 92.3% 95.7%
3u7vA01 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.51 45.0 3.64e-01 95.9% 81.5%
3a9iA01 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.51 44.0 4.00e-01 93.4% 87.9%
1ad1A00 3.20.20.20 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Dihydropteroate synthase-like 0.50 44.0 4.01e-01 94.9% 92.4%
7lnpA01 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.50 45.0 3.66e-01 94.4% 83.5%
3d3aA01 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.50 44.0 3.95e-01 94.9% 88.4%
ECOD (88)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5058170 2007.5.1.8 a/b three-layered sandwiches › Flavodoxin-like › SGNH hydrolase › SGNH hydrolase › Lipase_GDSL_2 0.86 83.0 7.24e-01 100.0% 99.6%
5037295 2007.5.1.8 a/b three-layered sandwiches › Flavodoxin-like › SGNH hydrolase › SGNH hydrolase › Lipase_GDSL_2 0.84 69.0 6.87e-01 83.7% 99.5%
1411712 2007.5.1.8 a/b three-layered sandwiches › Flavodoxin-like › SGNH hydrolase › SGNH hydrolase › Lipase_GDSL_2 0.84 67.0 7.09e-01 81.1% 100.0%
3964781 2007.5.1.8 a/b three-layered sandwiches › Flavodoxin-like › SGNH hydrolase › SGNH hydrolase › Lipase_GDSL_2 0.84 70.0 7.25e-01 85.2% 96.7%
10062 2007.5.1.8 a/b three-layered sandwiches › Flavodoxin-like › SGNH hydrolase › SGNH hydrolase › Lipase_GDSL_2 0.83 68.0 6.22e-01 84.7% 96.8%
5054361 2007.5.1.0 a/b three-layered sandwiches › Flavodoxin-like › SGNH hydrolase › SGNH hydrolase 0.82 78.0 6.65e-01 99.5% 100.0%
2526997 2007.5.1.8 a/b three-layered sandwiches › Flavodoxin-like › SGNH hydrolase › SGNH hydrolase › Lipase_GDSL_2 0.82 67.0 6.34e-01 84.7% 80.9%
4624410 2007.5.1.8 a/b three-layered sandwiches › Flavodoxin-like › SGNH hydrolase › SGNH hydrolase › Lipase_GDSL_2 0.82 68.0 6.84e-01 85.2% 93.3%
3983672 2007.5.1.8 a/b three-layered sandwiches › Flavodoxin-like › SGNH hydrolase › SGNH hydrolase › Lipase_GDSL_2 0.82 68.0 6.93e-01 85.2% 96.3%
3291200 2007.5.1.8 a/b three-layered sandwiches › Flavodoxin-like › SGNH hydrolase › SGNH hydrolase › Lipase_GDSL_2 0.81 66.0 6.28e-01 84.2% 87.1%
167873 2007.5.1.8 a/b three-layered sandwiches › Flavodoxin-like › SGNH hydrolase › SGNH hydrolase › Lipase_GDSL_2 0.81 66.0 6.62e-01 84.7% 98.5%
1144534 2007.5.1.8 a/b three-layered sandwiches › Flavodoxin-like › SGNH hydrolase › SGNH hydrolase › Lipase_GDSL_2 0.81 65.0 6.25e-01 82.7% 95.4%
4810434 2007.5.1.8 a/b three-layered sandwiches › Flavodoxin-like › SGNH hydrolase › SGNH hydrolase › Lipase_GDSL_2 0.80 65.0 5.93e-01 82.7% 85.7%
4975785 2007.1.13.1 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Lumazine synthase › DMRL_synthase 0.71 48.0 5.39e-01 84.7% 86.5%
4956039 2007.1.13.1 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Lumazine synthase › DMRL_synthase 0.70 48.0 5.55e-01 84.7% 95.7%
5038863 2007.1.13.1 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Lumazine synthase › DMRL_synthase 0.69 49.0 5.33e-01 85.2% 84.8%
4012732 2007.1.13.0 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Lumazine synthase 0.69 49.0 5.41e-01 85.2% 89.9%
4071709 2007.1.13.1 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Lumazine synthase › DMRL_synthase 0.68 48.0 5.35e-01 85.2% 90.3%
4064648 2007.1.13.1 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Lumazine synthase › DMRL_synthase 0.68 48.0 5.29e-01 85.2% 88.7%
4330472 2007.1.13.1 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Lumazine synthase › DMRL_synthase 0.68 47.0 5.27e-01 84.7% 89.7%
4433821 2007.1.13.1 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Lumazine synthase › DMRL_synthase 0.67 48.0 5.25e-01 85.2% 88.1%
3474979 7590.1.1.0 a/b three-layered sandwiches › Middle domain in Argonaute homologs › Middle domain in Argonaute homologs › Middle domain in Argonaute homologs 0.67 41.0 4.62e-01 85.2% 76.8%
4991600 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.67 45.0 4.52e-01 82.7% 66.3%
3260826 2003.1.1.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains 0.67 52.0 5.30e-01 83.7% 82.6%
4989677 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.66 44.0 4.66e-01 80.1% 75.4%
4278210 2007.6.1.0 a/b three-layered sandwiches › Flavodoxin-like › Ribosomal protein S2/SIS domain › Ribosomal protein S2/SIS domain 0.65 42.0 4.40e-01 82.1% 71.4%
4315678 2007.6.1.0 a/b three-layered sandwiches › Flavodoxin-like › Ribosomal protein S2/SIS domain › Ribosomal protein S2/SIS domain 0.64 41.0 4.30e-01 81.6% 67.6%
3497185 2003.1.1.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains 0.63 51.0 4.80e-01 85.2% 93.8%
3970285 2003.1.1.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains 0.63 51.0 5.21e-01 84.7% 95.8%
3263363 2003.1.1.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains 0.62 48.0 4.95e-01 83.7% 84.2%
5051099 2007.22.1.1 a/b three-layered sandwiches › Flavodoxin-like › Methyl-viologen reducing hydrogenase subunit D › Methyl-viologen reducing hydrogenase subunit D › FlpD 0.61 40.0 4.51e-01 85.2% 86.9%
4437580 2004.1.1.146 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ATPase 0.61 47.0 4.32e-01 79.1% 68.4%
5048560 2004.1.1.119 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Gtr1_RagA 0.61 49.0 5.12e-01 84.7% 99.4%
5040728 2004.1.1.146 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ATPase 0.61 47.0 4.46e-01 80.1% 73.9%
4946557 2004.1.1.119 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Gtr1_RagA 0.61 49.0 5.10e-01 84.2% 96.7%
5052757 2004.1.1.16 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Arf 0.60 49.0 4.85e-01 84.7% 92.2%
4996416 7512.1.1.0 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase 0.60 46.0 4.75e-01 78.6% 87.4%
135757 2004.1.1.146 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ATPase 0.59 47.0 4.25e-01 82.1% 67.4%
4998293 2002.1.1.60 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › AP_endonuc_2 0.59 52.0 4.46e-01 92.9% 84.2%
4996689 2004.1.1.16 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Arf 0.59 49.0 4.64e-01 87.2% 98.7%
3886073 2004.1.1.19 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Ras 0.59 48.0 4.38e-01 84.7% 93.3%
4570560 2002.1.1.120 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.58 47.0 3.96e-01 84.7% 92.7%
4528763 2484.1.1.40 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RuvX 0.56 39.0 4.45e-01 81.1% 97.1%
3229815 2002.1.1.30 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_18 0.56 50.0 4.01e-01 94.9% 93.2%
5027315 2004.1.1.146 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ATPase 0.56 44.0 4.03e-01 80.6% 74.0%
3721877 2002.1.1.60 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › AP_endonuc_2 0.56 48.0 4.01e-01 93.4% 83.8%
4602919 2484.1.1.40 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RuvX 0.54 38.0 4.28e-01 83.2% 94.0%
4579381 2484.1.1.25 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RuvC 0.54 42.0 4.62e-01 83.2% 100.0%
3585531 2002.1.1.60 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › AP_endonuc_2 0.54 47.0 4.23e-01 93.4% 88.0%
4308615 2484.1.1.40 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RuvX 0.54 37.0 4.29e-01 83.2% 100.0%
3189590 2002.1.1.41 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › A_deaminase 0.54 49.0 3.56e-01 100.0% 50.4%
3631882 2002.1.1.41 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › A_deaminase 0.54 49.0 3.63e-01 100.0% 68.9%
4092361 2002.1.1.90 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › MTHFR 0.54 45.0 3.98e-01 88.3% 90.5%
4571749 2484.1.1.25 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RuvC 0.54 42.0 4.53e-01 82.7% 97.0%
5005228 2002.1.1.58 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_39 0.54 44.0 3.67e-01 86.7% 68.4%
4008911 2002.1.1.60 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › AP_endonuc_2 0.54 47.0 4.04e-01 95.4% 70.0%
5040920 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.54 43.0 4.50e-01 84.2% 95.6%
4106513 2484.1.1.25 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RuvC 0.54 43.0 4.56e-01 83.7% 98.2%
4543638 2484.1.1.25 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RuvC 0.54 42.0 4.50e-01 83.2% 97.0%
4373226 2484.1.1.25 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RuvC 0.53 43.0 4.43e-01 84.7% 96.8%
4610182 2484.1.1.25 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RuvC 0.53 42.0 4.34e-01 83.7% 85.8%
4202129 2484.1.1.25 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RuvC 0.53 41.0 4.52e-01 81.6% 99.4%
4529580 2484.1.1.25 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RuvC 0.53 41.0 4.52e-01 81.6% 99.4%
4933505 2002.1.1.0 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels 0.53 48.0 3.99e-01 99.0% 73.2%
4296237 2484.1.1.25 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RuvC 0.53 40.0 4.47e-01 81.1% 100.0%
4069907 2484.1.1.25 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RuvC 0.53 43.0 4.55e-01 84.7% 98.2%
3602637 2002.1.1.60 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › AP_endonuc_2 0.53 46.0 4.52e-01 92.9% 85.1%
4162427 2484.1.1.25 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RuvC 0.53 41.0 4.52e-01 82.7% 100.0%
4484979 2484.1.1.25 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RuvC 0.53 41.0 4.41e-01 83.7% 95.2%
4218879 2484.1.1.25 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RuvC 0.53 40.0 4.46e-01 81.6% 100.0%
4123278 2484.1.1.25 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RuvC 0.53 41.0 4.40e-01 83.7% 94.1%
1096260 2484.1.1.25 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RuvC 0.53 40.0 4.42e-01 83.7% 98.7%
1891697 2002.1.1.60 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › AP_endonuc_2 0.52 45.0 3.99e-01 93.9% 76.4%
1144707 2002.1.1.60 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › AP_endonuc_2 0.52 45.0 4.09e-01 92.3% 93.0%
3966304 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.52 40.0 4.40e-01 81.6% 100.0%
4631411 2484.1.1.25 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RuvC 0.52 40.0 4.41e-01 81.6% 99.4%
4423305 2002.1.1.4 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Alpha-amylase 0.52 47.0 3.66e-01 98.0% 85.6%
4522962 2484.1.1.25 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RuvC 0.52 42.0 4.38e-01 83.7% 93.7%
4252006 2484.1.1.25 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RuvC 0.52 40.0 4.36e-01 82.1% 96.4%
4513876 2002.1.1.4 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Alpha-amylase 0.52 47.0 3.63e-01 97.4% 84.8%
4638438 2484.1.1.25 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RuvC 0.52 40.0 4.40e-01 84.7% 99.4%
3992092 2005.1.1.9 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › DNA_photolyase 0.52 39.0 3.81e-01 78.1% 76.4%
4378000 2002.1.1.290 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › PF31264 0.52 44.0 4.40e-01 89.3% 97.5%
324342 2002.1.1.0 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels 0.51 45.0 3.59e-01 98.0% 91.8%
5039784 2002.1.1.90 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › MTHFR 0.51 45.0 3.82e-01 95.4% 90.6%
3190068 246.2.1.1 a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos 0.51 45.0 3.49e-01 95.9% 69.3%
3253805 207.1.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.50 38.0 3.61e-01 79.1% 86.1%
3654710 2003.1.6.9 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Tubulin nucleotide-binding domain-like › SHMT 0.50 34.0 3.93e-01 82.1% 94.3%
D2 medium residues 126-163
PDB
Domain cluster: representative
CATH (19)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2zadA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.65 50.0 3.83e-01 100.0% 96.5%
1hbxA01 3.40.1810.10 Alpha Beta › 3-Layer(aba) Sandwich › SRF-like › Transcription factor, MADS-box 0.63 44.0 3.61e-01 73.7% 54.9%
2jroA01 3.30.1910.10 Alpha Beta › 2-Layer Sandwich › so0334 like fold › so0334 like domain 0.62 51.0 4.37e-01 100.0% 56.9%
2qr4A02 1.10.287.830 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › putative peptidase helix hairpin domain like 0.59 47.0 4.51e-01 100.0% 85.1%
3ce2A02 1.10.287.830 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › putative peptidase helix hairpin domain like 0.58 46.0 4.47e-01 100.0% 85.1%
3bl4A01 3.40.1680.10 Alpha Beta › 3-Layer(aba) Sandwich › yp_829618.1 fold › yp_829618.1 domain like 0.58 49.0 4.00e-01 100.0% 51.4%
8gr2A01 3.40.50.1110 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase 0.58 40.0 2.65e-01 78.9% 16.4%
3on7B00 2.60.120.330 Mainly Beta › Sandwich › Jelly Rolls › B-lactam Antibiotic, Isopenicillin N Synthase; Chain 0.57 35.0 2.13e-01 100.0% 7.6%
3pfsB00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.57 49.0 3.41e-01 100.0% 80.0%
4ifeA02 3.30.420.240 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › 0.57 42.0 2.66e-01 81.6% 18.9%
3hwcA01 1.10.3140.10 Mainly Alpha › Orthogonal Bundle › 4-hydroxybutyryl-coa dehydratase, domain 1 › 4-hydroxybutyryl-coa dehydratase, domain 1 0.56 41.0 2.81e-01 100.0% 21.8%
2jrtA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 43.0 3.50e-01 100.0% 50.0%
2zuvA01 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.54 45.0 2.66e-01 100.0% 11.9%
3vwaA02 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.53 36.0 2.43e-01 94.7% 18.9%
4k15A00 2.60.40.3860 Mainly Beta › Sandwich › Immunoglobulin-like › 0.53 41.0 2.99e-01 100.0% 60.9%
6kghA03 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.52 40.0 2.69e-01 97.4% 27.3%
4lqeA00 3.40.1350.140 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › MepB-like 0.51 42.0 2.90e-01 100.0% 64.4%
1ffvB04 3.30.365.10 Alpha Beta › 2-Layer Sandwich › Aldehyde Oxidoreductase; domain 4 › Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain 0.51 42.0 2.70e-01 100.0% 48.5%
4ht4A00 3.30.930.30 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › 0.51 44.0 2.81e-01 100.0% 34.0%
ECOD (12)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4094620 2003.1.5.23 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_4 0.63 44.0 2.68e-01 73.7% 15.1%
3604410 2004.1.1.293 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_15 0.59 48.0 3.19e-01 100.0% 33.3%
4558649 3105.1.1.2 a+b three layers › thylakoid acid phosphatase domain-related › thylakoid acid phosphatase domain-related › thylakoid acid phosphatase domain-related › DUF5130 0.58 46.0 3.30e-01 100.0% 57.2%
4064579 3455.1.1.0 alpha arrays › WY-domain in RXLR effectors › WY-domain in RXLR effectors › WY-domain in RXLR effectors 0.58 42.0 3.01e-01 100.0% 26.1%
4928783 3016.1.1.0 a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases 0.55 47.0 4.04e-01 100.0% 82.5%
3977412 4076.3.1.0 a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain 0.55 44.0 4.16e-01 97.4% 75.5%
3237750 101.1.2.303 alpha arrays › HTH › HTH › winged helix domain › RPC5 0.53 37.0 3.08e-01 86.8% 64.4%
3655226 101.1.10.3 alpha arrays › HTH › HTH › Cyclin-like › TFIIB 0.53 39.0 2.94e-01 100.0% 51.1%
3335794 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.52 42.0 2.68e-01 100.0% 63.0%
3722558 331.23.1.4 a+b two layers › TBP-like › Integrator IntS9/IntS11 C-terminal domain › Integrator IntS9/IntS11 C-terminal domain › CPSF100_C 0.52 39.0 3.33e-01 100.0% 85.0%
3962882 10.12.1.0 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.51 35.0 2.07e-01 76.3% 7.9%
222395 304.55.1.6 a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Origin of replication-binding domains › MobA_MobL 0.51 44.0 2.81e-01 100.0% 34.0%