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BML_08012017_9_75m_scaffold_2_prodigal-single.1__X__X__00323

Bact-Vir

BML_08012017_9_75m_scaffold_2_prodigal-single.1__X__X__00323

Identity

Kingdom:
phage

Quality

92.1 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-72_132-148
PDB
CATH (45)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
7afrX02 2.30.30.180 Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain 0.84 55.0 6.63e-01 76.4% 100.0%
3udcA02 2.30.30.60 Mainly Beta › Roll › SH3 type barrels. › 0.82 46.0 5.88e-01 75.3% 98.0%
5ajiB02 2.30.30.60 Mainly Beta › Roll › SH3 type barrels. › 0.81 45.0 5.91e-01 74.2% 100.0%
1ib8A02 2.30.30.180 Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain 0.78 57.0 6.52e-01 78.7% 100.0%
7razA01 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.74 45.0 4.66e-01 75.3% 64.7%
4ytlA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.74 42.0 5.34e-01 70.8% 100.0%
2e70A00 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.73 44.0 4.83e-01 73.0% 74.6%
2xk0A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.72 44.0 4.89e-01 77.5% 78.3%
4ii1A02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.71 44.0 5.43e-01 76.4% 100.0%
1zq1A01 2.30.30.520 Mainly Beta › Roll › SH3 type barrels. › 0.71 51.0 5.41e-01 76.4% 85.7%
3j7yD02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.71 53.0 5.54e-01 84.3% 86.4%
3h8zA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.71 44.0 5.09e-01 82.0% 87.5%
5i4eA01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.71 37.0 5.00e-01 77.5% 100.0%
1b7tA02 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.70 41.0 5.16e-01 86.5% 100.0%
2eqjA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.69 43.0 4.90e-01 75.3% 83.3%
3k8uA01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.68 60.0 5.31e-01 98.9% 96.2%
4ry2A01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.65 57.0 4.94e-01 98.9% 87.9%
1vwxA02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.64 48.0 5.05e-01 82.0% 90.0%
6sziB01 3.20.20.470 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glucansucrase 0.64 50.0 3.39e-01 85.4% 29.4%
1x6gA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.63 44.0 4.63e-01 74.2% 80.2%
7cfdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.62 45.0 4.94e-01 94.4% 94.5%
1fx7B03 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.61 46.0 4.86e-01 80.9% 100.0%
4h75A00 2.80.10.70 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › Spindlin/Ssty 0.61 44.0 3.44e-01 76.4% 34.2%
2akkA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.61 44.0 4.80e-01 79.8% 93.2%
2dl5A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.61 41.0 4.37e-01 70.8% 79.5%
4mi7A00 3.90.70.170 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.60 53.0 4.77e-01 98.9% 95.2%
1y71A00 2.30.30.430 Mainly Beta › Roll › SH3 type barrels. › Kinase associated protein B domain 0.60 42.0 3.95e-01 73.0% 60.6%
2la7A01 2.40.128.270 Mainly Beta › Beta Barrel › Lipocalin › 0.60 43.0 3.87e-01 76.4% 100.0%
4c5eC02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.59 41.0 4.09e-01 73.0% 84.4%
4qrlA00 2.40.128.280 Mainly Beta › Beta Barrel › Lipocalin › 0.59 40.0 3.78e-01 70.8% 100.0%
5j3tA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.58 41.0 3.65e-01 73.0% 67.5%
3feoB02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.58 40.0 4.20e-01 73.0% 84.3%
1awjA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.58 40.0 4.22e-01 80.9% 81.8%
2ct4A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.58 41.0 4.49e-01 88.8% 94.3%
4hffA00 3.90.1720.70 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › 0.57 50.0 4.23e-01 100.0% 74.2%
1q67A01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.57 39.0 3.38e-01 70.8% 77.9%
1ukfA00 3.90.70.20 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.55 48.0 3.86e-01 100.0% 93.1%
2rqrA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.55 42.0 3.80e-01 80.9% 88.2%
2kr0A01 2.30.29.70 Mainly Beta › Roll › PH-domain like › Proteasomal ubiquitin receptor Rpn13/ADRM1 0.55 38.0 3.53e-01 71.9% 78.8%
3fyfA00 2.40.128.410 Mainly Beta › Beta Barrel › Lipocalin › 0.54 40.0 3.48e-01 80.9% 87.2%
3npfA02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.54 40.0 4.39e-01 88.8% 100.0%
3ilfA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.53 44.0 3.24e-01 94.4% 98.8%
1vwxf00 2.40.10.190 Mainly Beta › Beta Barrel › Thrombin, subunit H › translation elongation factor selb, chain A, domain 4 0.52 40.0 3.80e-01 83.1% 94.5%
3juuA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.52 44.0 3.22e-01 97.8% 96.6%
6e20A00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.50 38.0 3.39e-01 82.0% 97.7%
ECOD (77)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4368811 4.1.1.364 beta barrels › SH3 › SH3 › SH3 › GatD_N 0.83 48.0 5.94e-01 70.8% 92.7%
3781711 4.1.1.236 beta barrels › SH3 › SH3 › SH3 › KOWx_SPT5 0.81 44.0 5.48e-01 74.2% 87.3%
4432348 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.80 57.0 6.40e-01 84.3% 95.6%
4044896 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.80 53.0 5.72e-01 77.5% 80.0%
3839016 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.79 55.0 6.26e-01 82.0% 98.5%
4226849 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.77 57.0 5.96e-01 83.1% 85.0%
4432457 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.77 56.0 6.25e-01 83.1% 97.1%
4554867 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.77 54.0 6.17e-01 78.7% 98.5%
4157193 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.76 56.0 6.25e-01 83.1% 98.6%
3037102 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.76 45.0 5.28e-01 75.3% 85.5%
3609597 4.1.1.236 beta barrels › SH3 › SH3 › SH3 › KOWx_SPT5 0.76 42.0 5.02e-01 74.2% 81.7%
3616007 4.1.1.233 beta barrels › SH3 › SH3 › SH3 › Myosin_VII_N 0.76 46.0 5.71e-01 74.2% 100.0%
5000741 4.17.1.1 beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.75 50.0 5.76e-01 78.7% 93.8%
5002601 4.1.1.485 beta barrels › SH3 › SH3 › SH3 › DUF6897 0.75 48.0 5.72e-01 75.3% 98.3%
4191690 4.1.1.98 beta barrels › SH3 › SH3 › SH3 › ProQ_C 0.75 47.0 5.69e-01 79.8% 98.3%
4027422 4.1.1.33 beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.75 44.0 5.45e-01 76.4% 96.4%
4158712 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.74 51.0 5.70e-01 78.7% 91.4%
4093911 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.74 55.0 5.96e-01 84.3% 93.3%
4084190 4.1.1.98 beta barrels › SH3 › SH3 › SH3 › ProQ_C 0.74 47.0 5.54e-01 79.8% 96.6%
4321173 4.1.1.98 beta barrels › SH3 › SH3 › SH3 › ProQ_C 0.73 46.0 5.59e-01 79.8% 98.3%
4023922 4.1.1.38 beta barrels › SH3 › SH3 › SH3 › Ribosomal_L2_C 0.73 55.0 4.68e-01 84.3% 50.0%
3673317 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.73 45.0 5.45e-01 74.2% 100.0%
3420348 4.1.1.306 beta barrels › SH3 › SH3 › SH3 › SH3_VIII-1_N 0.73 45.0 5.44e-01 76.4% 100.0%
1884741 4.1.1.130 beta barrels › SH3 › SH3 › SH3 › SH3_19 0.73 46.0 5.41e-01 77.5% 96.6%
3553983 4.1.1.233 beta barrels › SH3 › SH3 › SH3 › Myosin_VII_N 0.72 48.0 5.60e-01 78.7% 100.0%
3554026 4.1.1.233 beta barrels › SH3 › SH3 › SH3 › Myosin_VII_N 0.72 47.0 5.58e-01 77.5% 100.0%
3428486 4.1.1.33 beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.72 44.0 4.61e-01 76.4% 67.5%
3929373 4.1.1.233 beta barrels › SH3 › SH3 › SH3 › Myosin_VII_N 0.72 47.0 5.61e-01 77.5% 100.0%
3662319 4.1.1.13 beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.72 52.0 5.48e-01 77.5% 83.7%
3414063 4.1.1.233 beta barrels › SH3 › SH3 › SH3 › Myosin_VII_N 0.72 44.0 5.40e-01 73.0% 100.0%
3938589 4.1.1.33 beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.72 40.0 5.22e-01 84.3% 100.0%
3649741 4.1.1.33 beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.72 44.0 4.75e-01 78.7% 73.3%
3631165 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.71 57.0 5.84e-01 84.3% 92.9%
4949848 4.1.1.364 beta barrels › SH3 › SH3 › SH3 › GatD_N 0.71 43.0 5.25e-01 78.7% 98.2%
3817476 4.1.1.33 beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.71 40.0 5.17e-01 71.9% 100.0%
4068333 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.71 50.0 5.64e-01 79.8% 100.0%
4514731 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.71 51.0 5.29e-01 83.1% 78.8%
3326980 4.1.1.33 beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.71 43.0 5.04e-01 76.4% 90.0%
4284778 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.70 54.0 5.86e-01 82.0% 97.3%
4083915 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.70 54.0 5.85e-01 84.3% 97.3%
4248855 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.69 51.0 5.45e-01 83.1% 93.2%
4459365 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.69 52.0 5.46e-01 83.1% 88.7%
4252954 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.69 50.0 5.51e-01 82.0% 97.1%
2127495 4.1.1.38 beta barrels › SH3 › SH3 › SH3 › Ribosomal_L2_C 0.69 53.0 4.30e-01 84.3% 44.7%
5056599 219.1.1.51 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C39_2 0.68 61.0 5.12e-01 98.9% 91.3%
4214438 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.68 47.0 5.33e-01 78.7% 98.5%
3404936 4.1.1.33 beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.68 39.0 4.90e-01 83.1% 100.0%
3546607 4.1.1.33 beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.68 38.0 4.95e-01 84.3% 100.0%
3310575 4.1.1.158 beta barrels › SH3 › SH3 › SH3 › DUF3444 0.68 48.0 4.55e-01 74.2% 79.0%
3882695 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.67 44.0 5.23e-01 73.0% 100.0%
None 0.67 41.0 2.27e-01 86.5% 4.3%
3443078 4.1.1.330 beta barrels › SH3 › SH3 › SH3 › SH3-B_UBE2O, SH3-C_UBE2O 0.67 50.0 3.99e-01 79.8% 41.1%
3970579 219.1.1.18 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C39 0.66 59.0 4.98e-01 98.9% 85.3%
4947695 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.66 50.0 5.43e-01 80.9% 100.0%
4396355 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.66 52.0 5.37e-01 84.3% 89.4%
3998022 4.1.1.33 beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.66 41.0 4.97e-01 86.5% 100.0%
3222210 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.66 50.0 5.52e-01 80.9% 100.0%
3934126 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.65 43.0 5.09e-01 74.2% 100.0%
3923813 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.65 46.0 5.28e-01 75.3% 100.0%
3574613 4.1.1.33 beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.65 42.0 4.05e-01 88.8% 58.0%
4844109 4.1.1.33 beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.65 39.0 4.35e-01 85.4% 76.1%
3775592 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.64 40.0 2.17e-01 85.4% 3.6%
3620554 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.64 46.0 4.54e-01 75.3% 70.5%
3484007 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.63 43.0 4.76e-01 73.0% 88.6%
3577864 4.1.1.33 beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.63 41.0 4.21e-01 87.6% 68.2%
3495480 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.63 40.0 4.73e-01 84.3% 95.0%
3518287 4.1.1.347 beta barrels › SH3 › SH3 › SH3 › KOW7_SPT5, KOW6_SPT5 0.63 50.0 4.56e-01 84.3% 97.4%
3396896 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.63 43.0 4.65e-01 70.8% 100.0%
3903213 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.62 40.0 3.18e-01 87.6% 32.6%
3926672 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.62 44.0 4.99e-01 76.4% 100.0%
3898952 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.61 43.0 4.64e-01 74.2% 86.7%
3546309 4.1.1.92 beta barrels › SH3 › SH3 › SH3 › SH3_9 0.61 42.0 4.51e-01 70.8% 85.3%
3590425 4.1.1.37 beta barrels › SH3 › SH3 › SH3 › YjdM 0.61 42.0 4.61e-01 75.3% 90.0%
3611989 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.61 45.0 3.82e-01 78.7% 63.3%
3833030 4.1.1.187 beta barrels › SH3 › SH3 › SH3 › DIRP 0.59 45.0 3.87e-01 79.8% 81.5%
2849853 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.59 41.0 4.60e-01 87.6% 95.5%
3236054 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.58 44.0 4.78e-01 96.6% 97.3%
D2 medium residues 73-131
PDB
Domain cluster: representative
CATH (1)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1wijA00 1.10.3180.10 Mainly Alpha › Orthogonal Bundle › DNA-binding domain of ethylene- insensitive3-like3 › DNA-binding domain of EIN3-like 0.60 50.0 4.03e-01 100.0% 82.7%
ECOD (1)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3998763 354.1.1.1 few secondary structure elements › Sea anemone toxin k-like › Sea anemone toxin k-related › Sea anemone toxin k-related › ShK 0.52 40.0 3.23e-01 86.4% 41.0%