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BML_08012017_9_75m_scaffold_2_prodigal-single.1__X__X__00342

Bact-Vir

BML_08012017_9_75m_scaffold_2_prodigal-single.1__X__X__00342

Identity

Kingdom:
phage

Quality

95.5 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-104
PDB
CATH (37)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3ifvC00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.88 84.0 6.14e-01 100.0% 44.2%
1sxjH01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.85 80.0 7.47e-01 100.0% 92.7%
3p91A00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.85 80.0 5.85e-01 100.0% 45.7%
2avtB01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.84 79.0 6.50e-01 100.0% 64.5%
1ge8A00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.84 77.0 5.68e-01 97.1% 45.4%
1b77A00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.84 76.0 5.68e-01 100.0% 43.0%
1u7bA00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.83 78.0 5.70e-01 100.0% 45.8%
1plqA00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.83 77.0 5.59e-01 99.0% 44.2%
4trtA01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.83 77.0 7.25e-01 100.0% 88.5%
5wceA03 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.83 77.0 7.31e-01 100.0% 89.9%
4rkiA02 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.82 75.0 6.90e-01 98.0% 87.7%
3t0pA02 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.82 75.0 5.97e-01 98.0% 54.4%
5aguA03 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.82 76.0 7.00e-01 99.0% 90.5%
2ix2B00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.81 75.0 5.58e-01 100.0% 45.3%
5w7zA01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.81 75.0 7.27e-01 100.0% 95.6%
5agvA01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.81 75.0 7.00e-01 100.0% 87.1%
3pweA01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.80 74.0 6.94e-01 100.0% 89.4%
1vpkA01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.80 74.0 6.98e-01 100.0% 90.0%
1vpkA02 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.80 74.0 6.79e-01 100.0% 85.9%
3a1jB00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.80 73.0 5.26e-01 99.0% 46.5%
6ptrB01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.79 73.0 7.08e-01 100.0% 95.6%
1ud9A00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.79 72.0 5.40e-01 100.0% 45.9%
6j8yA00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.78 71.0 5.25e-01 99.0% 44.4%
5wceA02 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.77 71.0 6.52e-01 100.0% 89.1%
6ap4B02 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.77 71.0 6.29e-01 100.0% 86.5%
4trtA02 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.76 70.0 6.65e-01 100.0% 89.1%
8dqwG01 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.75 66.0 5.47e-01 95.1% 71.4%
1hczA02 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.57 34.0 4.06e-01 70.6% 100.0%
2r41A00 3.10.450.150 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › enterococcus faecalis protein 0.56 41.0 4.18e-01 97.1% 77.7%
2knqA01 3.55.40.10 Alpha Beta › 3-Layer(bab) Sandwich › minor pseudopilin epsh fold › minor pseudopilin epsh domain 0.54 43.0 3.99e-01 87.3% 90.9%
1gofA02 2.130.10.80 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Galactose oxidase/kelch, beta-propeller 0.54 43.0 3.01e-01 90.2% 83.5%
1vq8E01 3.90.930.12 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › Ribosomal protein L6 0.54 30.0 3.30e-01 74.5% 67.1%
3b7fA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.53 42.0 2.90e-01 85.3% 86.7%
1ejfA00 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 42.0 4.14e-01 87.3% 93.6%
5fmgF00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.51 40.0 3.13e-01 82.4% 60.7%
1ri6A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.51 41.0 2.96e-01 90.2% 85.6%
1rypC00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.51 39.0 3.00e-01 81.4% 56.1%
ECOD (75)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4939065 227.1.1.1 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.89 85.0 8.00e-01 100.0% 90.0%
5059299 227.1.1.1 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.88 84.0 7.88e-01 100.0% 90.0%
4980359 227.1.1.1 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.87 83.0 7.75e-01 100.0% 90.0%
4936049 227.1.1.1 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.87 82.0 7.67e-01 100.0% 90.0%
5070586 227.1.1.1 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.86 82.0 7.54e-01 100.0% 89.6%
5056757 227.1.1.1 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.85 80.0 7.41e-01 100.0% 88.0%
4941928 227.1.1.1 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.85 80.0 7.53e-01 100.0% 91.7%
1822927 227.1.1.2 a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.85 80.0 6.66e-01 100.0% 70.6%
5039026 227.1.1.0 a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.84 79.0 7.45e-01 100.0% 87.5%
4934001 227.1.1.1 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.84 79.0 7.30e-01 100.0% 92.0%
4057537 227.1.1.1 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.84 79.0 7.31e-01 100.0% 88.0%
4650779 227.1.1.8 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_3 0.84 78.0 7.24e-01 99.0% 88.0%
4943404 227.1.1.0 a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.84 79.0 7.18e-01 100.0% 86.9%
5980 227.1.1.9 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_PPF 0.84 76.0 7.37e-01 100.0% 89.1%
5052550 227.1.1.1 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.84 78.0 7.27e-01 100.0% 92.0%
4987602 227.1.1.1 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.83 78.0 7.23e-01 100.0% 89.6%
4234515 227.1.1.3 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta 0.83 77.0 7.28e-01 100.0% 91.7%
1549269 227.1.1.3 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta 0.83 77.0 7.28e-01 100.0% 89.3%
3719143 227.1.1.0 a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.83 77.0 6.93e-01 100.0% 88.9%
4302174 227.1.1.1 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.83 77.0 7.15e-01 100.0% 88.0%
5078494 227.1.1.1 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.83 76.0 7.09e-01 99.0% 88.0%
2096126 227.1.1.8 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_3 0.83 77.0 7.24e-01 100.0% 87.7%
3602548 227.1.1.1 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.82 76.0 7.05e-01 99.0% 88.0%
3503503 227.1.1.12 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 0.82 75.0 6.64e-01 99.0% 90.3%
4650306 227.1.1.3 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta 0.82 76.0 7.18e-01 100.0% 91.7%
1871497 227.1.1.8 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_3 0.82 75.0 7.09e-01 98.0% 87.4%
4500973 227.1.1.8 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_3 0.82 76.0 7.11e-01 100.0% 88.6%
3387600 227.1.1.3 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta 0.82 76.0 7.15e-01 100.0% 90.8%
2878151 227.1.1.3 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta 0.81 76.0 7.10e-01 100.0% 90.1%
3397928 227.1.1.12 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 0.81 74.0 6.88e-01 99.0% 92.0%
3478161 227.1.1.12 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 0.81 74.0 6.67e-01 99.0% 89.6%
4480621 227.1.1.3 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta 0.80 74.0 7.02e-01 100.0% 90.0%
4102438 227.1.1.3 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta 0.80 74.0 7.02e-01 100.0% 91.7%
4407599 227.1.1.3 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta 0.80 74.0 6.91e-01 100.0% 93.6%
2987540 227.1.1.3 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta 0.80 74.0 6.78e-01 100.0% 83.1%
5977 227.1.1.3 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta 0.80 74.0 6.98e-01 100.0% 90.0%
1871494 227.1.1.3 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta 0.80 74.0 6.93e-01 100.0% 90.1%
3804177 227.1.1.12 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 0.80 73.0 6.47e-01 100.0% 92.4%
4038410 227.1.1.12 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 0.80 73.0 6.49e-01 99.0% 90.0%
3719938 227.1.1.17 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DUF7881_N 0.80 74.0 6.56e-01 100.0% 88.6%
4608521 227.1.1.12 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 0.79 73.0 5.73e-01 99.0% 72.0%
4860663 227.1.1.3 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta 0.79 73.0 6.51e-01 100.0% 78.6%
3785352 227.1.1.12 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 0.79 72.0 6.08e-01 99.0% 84.8%
4172290 227.1.1.1 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.79 72.0 6.59e-01 99.0% 87.7%
3722114 227.1.1.12 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 0.79 72.0 6.20e-01 99.0% 90.3%
3839477 227.1.1.7 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 0.79 73.0 6.78e-01 100.0% 89.6%
3015240 227.1.1.7 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 0.79 73.0 6.82e-01 100.0% 89.3%
3934036 227.1.1.0 a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.78 71.0 6.67e-01 97.1% 95.0%
3702817 227.1.1.0 a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.78 72.0 6.51e-01 100.0% 88.8%
3598259 227.1.1.0 a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.78 72.0 6.51e-01 100.0% 91.1%
2878142 227.1.1.7 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 0.78 71.0 6.64e-01 99.0% 88.6%
3597091 227.1.1.12 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 0.78 71.0 6.66e-01 100.0% 88.7%
4995742 227.1.1.0 a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.78 71.0 6.95e-01 99.0% 90.9%
4372908 227.1.1.0 a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.77 69.0 6.44e-01 97.1% 84.0%
2096128 227.1.1.7 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 0.77 71.0 6.56e-01 100.0% 90.6%
3388280 227.1.1.7 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 0.77 71.0 6.73e-01 100.0% 88.3%
3256904 227.1.1.12 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 0.77 70.0 6.53e-01 100.0% 91.2%
3623607 227.1.1.12 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 0.77 70.0 6.26e-01 100.0% 87.1%
1549270 227.1.1.7 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 0.76 70.0 6.70e-01 100.0% 90.6%
143267 227.1.1.1 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.76 69.0 6.40e-01 99.0% 89.0%
5074321 227.1.1.0 a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.76 69.0 6.47e-01 100.0% 88.0%
3738030 227.1.1.4 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad1 0.76 67.0 6.12e-01 97.1% 85.9%
143428 227.1.1.6 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.75 68.0 6.43e-01 99.0% 88.3%
3939755 227.1.1.0 a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.75 67.0 5.95e-01 99.0% 81.8%
3596476 227.1.1.11 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 0.74 66.0 5.86e-01 97.1% 92.3%
3789625 227.1.1.0 a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.74 65.0 5.94e-01 97.1% 88.9%
3251045 227.1.1.6 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.73 65.0 5.70e-01 99.0% 74.0%
4995744 227.1.1.0 a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.71 64.0 5.98e-01 98.0% 86.2%
5003413 884.1.1.0 a+b two layers › Hypothetical protein YjiA, C-terminal domain › Hypothetical protein YjiA, C-terminal domain › Hypothetical protein YjiA, C-terminal domain 0.61 36.0 3.34e-01 85.3% 46.9%
5019992 884.1.1.0 a+b two layers › Hypothetical protein YjiA, C-terminal domain › Hypothetical protein YjiA, C-terminal domain › Hypothetical protein YjiA, C-terminal domain 0.58 35.0 3.41e-01 85.3% 53.9%
5029736 274.1.1.0 a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.57 41.0 3.81e-01 73.5% 66.4%
5002020 884.1.1.0 a+b two layers › Hypothetical protein YjiA, C-terminal domain › Hypothetical protein YjiA, C-terminal domain › Hypothetical protein YjiA, C-terminal domain 0.57 35.0 3.37e-01 85.3% 53.9%
None 0.56 46.0 3.26e-01 90.2% 88.9%
3588565 6048.1.1.1 a+b two layers › DUF960-like › DUF960-like › DUF960-like › DUF960 0.53 40.0 4.27e-01 100.0% 95.5%
3492787 3257.1.1.1 a+b complex topology › Phosphoinositide phosphatase SAC1 N-terminal domain › Phosphoinositide phosphatase SAC1 N-terminal domain › Phosphoinositide phosphatase SAC1 N-terminal domain › Syja_N 0.52 37.0 3.12e-01 75.5% 63.1%
D2 high residues 119-228
PDB