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BML_08012017_9_75m_scaffold_2_prodigal-single.1__X__X__00384

Bact-Vir

BML_08012017_9_75m_scaffold_2_prodigal-single.1__X__X__00384

Identity

Kingdom:
phage

Quality

80.4 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 98-225
PDB
CATH (42)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1wruA01 2.30.300.10 Mainly Beta › Roll › Phage tail proteins - horseshoe like beta roll fold › Baseplate protein-like domain - beta roll fold 0.85 49.0 4.33e-01 95.3% 42.3%
3d37B01 2.30.300.10 Mainly Beta › Roll › Phage tail proteins - horseshoe like beta roll fold › Baseplate protein-like domain - beta roll fold 0.78 46.0 4.12e-01 99.2% 43.7%
3ibwA00 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.75 33.0 4.17e-01 85.2% 67.1%
3kyfA02 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.74 41.0 4.30e-01 96.9% 59.0%
1zpvA00 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.73 33.0 4.06e-01 86.7% 64.7%
3cddA01 2.30.300.10 Mainly Beta › Roll › Phage tail proteins - horseshoe like beta roll fold › Baseplate protein-like domain - beta roll fold 0.73 46.0 4.01e-01 95.3% 44.0%
1u8sA02 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.72 33.0 4.08e-01 87.5% 66.7%
2nwuB01 3.30.1440.10 Alpha Beta › 2-Layer Sandwich › 50s Ribosomal Protein L5; Chain: A, › Ribosomal protein L5 0.72 31.0 3.16e-01 85.2% 40.5%
1k28D03 2.40.30.150 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Bacteriophage T4, Gp27, baseplate hub, domain 3 0.72 44.0 5.01e-01 96.9% 82.1%
4p02A03 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.71 42.0 4.33e-01 96.9% 60.7%
4bfiB02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.69 35.0 4.18e-01 98.4% 71.1%
2gysA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.67 38.0 4.47e-01 97.7% 81.4%
5is2A01 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.65 31.0 3.60e-01 89.8% 61.5%
4ci2B02 2.30.130.40 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › LON domain-like 0.65 40.0 4.14e-01 96.1% 64.0%
5mmiU01 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.64 34.0 4.24e-01 96.9% 81.7%
2r4fA03 3.30.70.420 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Hydroxymethylglutaryl-CoA reductase, class I/II, NAD/NADP-binding domain 0.64 34.0 3.62e-01 85.9% 56.4%
4xhyA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.63 49.0 4.53e-01 96.9% 64.0%
4f07E00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.63 47.0 4.50e-01 96.9% 67.1%
2qrrA00 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.63 29.0 3.26e-01 86.7% 54.6%
2ecuA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.62 45.0 4.31e-01 96.9% 64.4%
1lfwA03 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.62 36.0 4.28e-01 97.7% 83.0%
3f62A00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.62 37.0 4.04e-01 97.7% 70.4%
1rz1A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.61 46.0 4.40e-01 96.9% 67.1%
3cb0D00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.60 48.0 4.46e-01 96.9% 67.1%
3nfwA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.60 46.0 4.13e-01 96.9% 58.1%
2v9kA04 3.30.70.3190 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.60 35.0 3.71e-01 84.4% 65.1%
4l82A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.60 47.0 4.36e-01 96.9% 67.3%
2r0xA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.60 47.0 4.41e-01 96.9% 67.9%
2onlC01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.59 31.0 3.74e-01 93.0% 75.6%
2d37A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.59 46.0 4.28e-01 96.9% 66.5%
1uscA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.59 46.0 4.14e-01 96.9% 59.6%
2k4qA00 4.10.410.40 Few Secondary Structures › Irregular › Factor Xa Inhibitor › 0.58 47.0 4.44e-01 100.0% 70.5%
3mdyA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.58 32.0 3.46e-01 96.1% 61.8%
2r6vA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.57 46.0 4.22e-01 96.9% 65.9%
3fgeA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.56 46.0 4.18e-01 96.9% 65.1%
3encA00 3.30.310.50 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Alpha-D-phosphohexomutase, C-terminal domain 0.56 28.0 3.41e-01 89.8% 74.7%
3pftA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.56 43.0 4.06e-01 96.9% 67.3%
4bxiA00 3.30.565.10 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain 0.55 35.0 3.38e-01 100.0% 55.5%
1a1xA00 2.40.15.10 Mainly Beta › Beta Barrel › Proto-oncogene - Oncogene Product P14tcl1 › TCL1/MTCP1 0.55 35.0 3.78e-01 97.7% 75.5%
4jgwA01 1.20.870.10 Mainly Alpha › Up-down Bundle › Son of sevenless (SoS) protein; Chain S, domain 1 › Son of sevenless (SoS) protein Chain: S domain 1 0.53 26.0 2.42e-01 100.0% 35.3%
1r62A00 3.30.565.10 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain 0.53 31.0 3.08e-01 97.7% 53.7%
5o5cB02 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.51 27.0 2.75e-01 97.7% 47.7%
ECOD (49)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4988103 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.84 51.0 5.89e-01 95.3% 82.1%
3604610 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.83 43.0 5.98e-01 93.0% 100.0%
3973341 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.82 43.0 5.28e-01 96.9% 78.8%
3586477 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.80 74.0 6.52e-01 96.9% 80.0%
4809346 1.1.13.57 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › PF30637 0.79 52.0 6.28e-01 97.7% 98.8%
4889788 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.79 50.0 5.74e-01 94.5% 84.5%
2475124 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.79 50.0 5.83e-01 94.5% 87.2%
3369895 304.12.1.0 a+b two layers › Alpha-beta plaits › Ribosomal protein S6 › Ribosomal protein S6 0.79 40.0 4.67e-01 97.7% 67.4%
2468519 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.79 53.0 5.87e-01 94.5% 85.3%
4883825 1.1.13.20 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Prophage_tailD1 0.78 46.0 5.40e-01 97.7% 81.5%
3312923 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.78 41.0 4.70e-01 97.7% 68.4%
4031285 1.1.13.64 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › TT1_Tal 0.78 46.0 5.48e-01 96.9% 84.4%
184486 1.1.13.26 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › GpP-like_1st 0.78 42.0 5.15e-01 95.3% 82.7%
3602746 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.78 35.0 4.43e-01 88.3% 70.0%
3256920 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.77 46.0 4.73e-01 96.9% 61.6%
3364258 304.8.1.45 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › bHLH-TF_ACT-like_plant 0.76 39.0 4.66e-01 97.7% 72.7%
3365684 306.6.1.0 a+b two layers › Glucose permease domain IIB-like › PH0987 N-terminal domain-like › PH0987 N-terminal domain-like 0.76 40.0 4.47e-01 98.4% 65.0%
3325750 304.8.1.45 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › bHLH-TF_ACT-like_plant 0.75 37.0 4.60e-01 96.1% 75.0%
3382396 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.75 38.0 4.68e-01 97.7% 75.3%
3826658 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.75 39.0 4.72e-01 97.7% 76.5%
3817811 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.74 38.0 4.54e-01 96.9% 72.9%
3659065 304.8.1.45 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › bHLH-TF_ACT-like_plant 0.74 41.0 4.66e-01 97.7% 71.0%
4260084 1.1.5.25 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ 0.74 41.0 4.28e-01 97.7% 58.3%
3308135 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.73 38.0 4.47e-01 97.7% 71.1%
5002662 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.73 43.0 4.81e-01 96.1% 74.0%
3968097 1.1.5.25 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ 0.73 40.0 4.35e-01 96.9% 62.7%
4608778 1.1.7.107 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF25965 0.72 42.0 4.38e-01 97.7% 61.7%
3970830 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.71 42.0 4.69e-01 100.0% 75.0%
3367471 304.8.1.45 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › bHLH-TF_ACT-like_plant 0.70 32.0 4.15e-01 89.8% 75.7%
3445191 304.8.1.45 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › bHLH-TF_ACT-like_plant 0.70 33.0 4.25e-01 93.8% 77.3%
3384073 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.68 42.0 4.34e-01 96.1% 65.0%
4539244 1.1.5.26 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZN 0.67 35.0 3.83e-01 96.9% 60.0%
3059162 1.1.13.30 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › E217_GP41 0.66 52.0 5.35e-01 99.2% 85.5%
4278559 1.1.5.26 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZN 0.64 37.0 3.93e-01 96.9% 63.6%
3688711 1.1.7.81 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › SEN1_barrel 0.63 39.0 4.19e-01 97.7% 70.9%
4646862 1.1.5.26 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZN 0.62 36.0 3.87e-01 96.9% 65.5%
4888726 1.1.13.6 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_tail_2 0.62 51.0 4.70e-01 97.7% 68.3%
4936008 1.1.7.28 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › HAS-barrel 0.62 37.0 4.18e-01 97.7% 78.9%
3941539 1.1.13.40 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_min_tail 0.61 47.0 5.15e-01 98.4% 98.1%
3981654 1.1.13.40 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_min_tail 0.61 47.0 5.07e-01 98.4% 94.5%
4031205 1.1.5.10 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Flavin_Reduct 0.59 51.0 4.40e-01 96.9% 59.6%
4998157 873.1.1.4 a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › TRAPP 0.59 41.0 3.71e-01 97.7% 52.6%
4482805 1.1.5.10 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Flavin_Reduct 0.58 49.0 4.20e-01 96.9% 58.5%
4963083 1.1.5.17 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › DUF447_N 0.56 43.0 3.67e-01 96.1% 49.3%
4409022 242.1.1.2 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_2 0.55 30.0 3.15e-01 95.3% 55.0%
4044984 387.1.1.0 few secondary structure elements › omega toxin-like › omega toxin-related › omega toxin-related 0.54 30.0 3.89e-01 93.8% 98.6%
4024901 328.3.1.0 a+b two layers › IF3-like › Translation initiation factor IF3, C-terminal domain › Translation initiation factor IF3, C-terminal domain 0.53 32.0 3.78e-01 96.1% 89.4%
3639132 1.1.9.0 beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.52 46.0 4.18e-01 97.7% 73.9%
3940034 11.1.1.5 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Zona_pellucida 0.50 35.0 3.49e-01 96.1% 70.0%
D2 high residues 534-592_757-824
PDB
CATH (23)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1k28D03 2.40.30.150 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Bacteriophage T4, Gp27, baseplate hub, domain 3 0.76 53.0 6.06e-01 100.0% 95.8%
1wruA01 2.30.300.10 Mainly Beta › Roll › Phage tail proteins - horseshoe like beta roll fold › Baseplate protein-like domain - beta roll fold 0.75 47.0 4.14e-01 99.2% 45.7%
3cddA01 2.30.300.10 Mainly Beta › Roll › Phage tail proteins - horseshoe like beta roll fold › Baseplate protein-like domain - beta roll fold 0.75 45.0 3.92e-01 100.0% 41.8%
3d37B01 2.30.300.10 Mainly Beta › Roll › Phage tail proteins - horseshoe like beta roll fold › Baseplate protein-like domain - beta roll fold 0.74 49.0 4.34e-01 100.0% 48.9%
2p5zX01 2.30.110.50 Mainly Beta › Roll › Pnp Oxidase; Chain A › 0.74 45.0 4.13e-01 100.0% 47.0%
2gysA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.65 36.0 4.33e-01 92.1% 80.2%
3kyfA02 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.64 41.0 4.34e-01 97.6% 71.8%
4ci2B02 2.30.130.40 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › LON domain-like 0.60 39.0 4.02e-01 100.0% 67.2%
4bfoA00 2.60.40.2440 Mainly Beta › Sandwich › Immunoglobulin-like › Carbohydrate binding type-21 domain 0.57 34.0 3.66e-01 93.7% 67.9%
7dl8C01 3.30.110.20 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Alba-like domain 0.57 33.0 3.88e-01 97.6% 82.0%
2onlC01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.55 30.0 3.56e-01 90.6% 76.7%
3f62A00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 33.0 3.56e-01 92.9% 71.3%
3ejjX03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 31.0 3.46e-01 92.9% 73.7%
4acvA00 3.30.2000.30 Alpha Beta › 2-Layer Sandwich › STM4215-like › 0.53 42.0 4.33e-01 98.4% 89.1%
2x7fC01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.53 32.0 3.64e-01 95.3% 80.9%
5w7tA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.53 32.0 3.60e-01 94.5% 78.4%
1a1xA00 2.40.15.10 Mainly Beta › Beta Barrel › Proto-oncogene - Oncogene Product P14tcl1 › TCL1/MTCP1 0.53 38.0 4.18e-01 100.0% 90.6%
3mdyA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.52 31.0 3.31e-01 95.3% 66.4%
1mruA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.52 32.0 3.69e-01 94.5% 84.8%
5wy8B03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 35.0 3.69e-01 92.9% 79.5%
2k4qA00 4.10.410.40 Few Secondary Structures › Irregular › Factor Xa Inhibitor › 0.50 43.0 4.07e-01 94.5% 86.5%
2x8kA01 2.40.30.200 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.50 37.0 4.01e-01 98.4% 93.3%
2l8yA00 3.30.110.70 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Hypothetical protein apc22750. Chain B 0.50 33.0 3.62e-01 100.0% 81.0%
ECOD (41)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3973341 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.86 49.0 5.92e-01 99.2% 84.7%
3943170 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.82 50.0 5.86e-01 99.2% 85.6%
5002753 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.82 51.0 6.09e-01 98.4% 92.9%
3981227 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.81 44.0 5.67e-01 96.9% 92.0%
3604610 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.80 41.0 5.78e-01 88.2% 100.0%
5002662 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.78 49.0 5.54e-01 98.4% 81.0%
4608778 1.1.7.107 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF25965 0.72 43.0 4.49e-01 100.0% 63.3%
184486 1.1.13.26 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › GpP-like_1st 0.70 43.0 5.28e-01 95.3% 96.3%
3970830 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.70 45.0 5.02e-01 100.0% 83.0%
3261290 11.1.1.843 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF7034 0.68 42.0 4.25e-01 93.7% 62.4%
4809346 1.1.13.57 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › PF30637 0.67 44.0 5.36e-01 91.3% 98.8%
4936008 1.1.7.28 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › HAS-barrel 0.66 41.0 4.66e-01 100.0% 82.1%
4054495 11.1.1.96 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › C1-set 0.66 37.0 4.14e-01 92.1% 70.0%
1914511 1.1.5.25 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ 0.65 43.0 4.31e-01 99.2% 66.1%
2475124 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.65 46.0 5.33e-01 96.1% 97.9%
4988103 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.65 45.0 5.14e-01 96.9% 94.7%
3468691 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.64 35.0 4.25e-01 92.1% 78.7%
4031285 1.1.13.64 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › TT1_Tal 0.64 44.0 5.14e-01 97.6% 100.0%
4883825 1.1.13.20 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Prophage_tailD1 0.63 44.0 5.15e-01 98.4% 98.9%
4889788 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.63 45.0 5.17e-01 96.1% 95.9%
4889790 3071.1.1.7 a+b complex topology › C-terminal insertion domain in phage tail proteins › C-terminal insertion domain in phage tail proteins › C-terminal insertion domain in phage tail proteins › PF30637 0.63 58.0 5.24e-01 97.6% 92.8%
3941539 1.1.13.40 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_min_tail 0.62 49.0 5.33e-01 100.0% 100.0%
4036849 1.1.5.25 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ 0.61 44.0 4.34e-01 97.6% 69.9%
1146574 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.61 35.0 3.81e-01 92.9% 65.7%
3981654 1.1.13.40 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_min_tail 0.61 49.0 5.24e-01 100.0% 98.2%
1320672 1.1.9.5 beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg 0.60 39.0 3.10e-01 100.0% 31.9%
4379249 1.1.5.25 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ 0.60 40.0 4.07e-01 98.4% 69.6%
5010581 310.3.1.0 a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related 0.59 40.0 4.17e-01 99.2% 74.8%
2468519 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.58 44.0 4.97e-01 95.3% 98.0%
4044984 387.1.1.0 few secondary structure elements › omega toxin-like › omega toxin-related › omega toxin-related 0.58 30.0 3.99e-01 85.8% 92.9%
5043215 304.8.1.82 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › PF27325 0.57 32.0 3.27e-01 97.6% 53.1%
3256920 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.57 43.0 4.37e-01 100.0% 79.2%
4210638 11.1.1.54 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › CBM_21 0.57 33.0 3.48e-01 92.9% 61.7%
3909822 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.57 41.0 4.36e-01 100.0% 86.4%
4196383 304.8.1.5 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › NIL 0.57 31.0 3.46e-01 84.3% 66.0%
4444321 1.1.9.5 beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg 0.56 36.0 3.07e-01 100.0% 38.6%
4175826 387.1.1.0 few secondary structure elements › omega toxin-like › omega toxin-related › omega toxin-related 0.56 29.0 3.92e-01 87.4% 98.5%
4061575 304.8.1.5 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › NIL 0.55 27.0 3.15e-01 81.1% 63.3%
3535347 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.52 39.0 4.08e-01 99.2% 85.2%
4673207 256.1.1.10 a+b two layers › MTH1598-like › MTH1598-like › MTH1598-like › MinE 0.51 33.0 3.91e-01 90.6% 96.5%
4888726 1.1.13.6 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_tail_2 0.51 46.0 4.22e-01 100.0% 76.8%
D3 high residues 617-700
PDB
Domain cluster: representative
CATH (17)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6fndA01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.80 44.0 3.31e-01 91.7% 24.7%
3mf1B00 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.63 44.0 3.07e-01 72.6% 33.5%
3r7wB02 3.30.450.190 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.59 32.0 2.85e-01 85.7% 39.0%
2qu8A00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.56 46.0 3.51e-01 89.3% 95.4%
1g5hA01 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.56 40.0 2.81e-01 76.2% 36.0%
3p9vA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.55 42.0 3.42e-01 81.0% 48.7%
1ewqA04 1.10.1420.10 Mainly Alpha › Orthogonal Bundle › MutS, DNA mismatch repair protein; Chain A, domain 3 › 0.55 48.0 4.17e-01 100.0% 68.4%
4ye4H01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 37.0 3.29e-01 70.2% 57.9%
2x5cA01 3.30.70.3590 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.55 45.0 4.38e-01 89.3% 84.6%
2nlvA00 3.30.310.110 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › XisI-like 0.55 41.0 3.72e-01 79.8% 60.7%
4d47A00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.54 41.0 2.68e-01 81.0% 84.4%
3nqzA01 3.10.450.490 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.53 36.0 3.56e-01 77.4% 64.8%
1r0aH01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 36.0 3.25e-01 71.4% 61.8%
1xkiA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.53 40.0 3.50e-01 81.0% 87.5%
2atpD00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 36.0 3.32e-01 71.4% 66.1%
3sreA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.52 40.0 2.78e-01 85.7% 84.2%
7ufsA01 2.70.98.30 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Golgi alpha-mannosidase II; domain 4 0.51 38.0 2.76e-01 79.8% 61.7%
ECOD (11)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3517799 2007.1.2.4 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › ANF_receptor 0.63 44.0 3.31e-01 73.8% 46.2%
3995302 5.1.4.158 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_HPS5 0.60 34.0 2.16e-01 94.0% 10.4%
3603448 3291.1.1.49 alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › NFACT_N 0.59 54.0 4.27e-01 100.0% 75.2%
5025218 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.58 42.0 2.76e-01 77.4% 50.4%
3912927 11.1.1.852 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF28276 0.57 40.0 3.46e-01 73.8% 59.3%
3913065 11.1.1.3 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › ig 0.55 39.0 3.36e-01 73.8% 59.3%
4545038 243.3.1.5 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › FTP 0.55 37.0 3.78e-01 73.8% 72.5%
5057564 213.1.1.0 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) 0.54 41.0 3.39e-01 82.1% 88.7%
3887429 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 38.0 3.19e-01 73.8% 62.1%
3801954 5.1.3.118 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 0.52 44.0 3.03e-01 98.8% 81.4%
3600915 77.3.1.0 beta meanders › open-sided beta-meander › CPAP G-box domain › CPAP G-box domain 0.52 41.0 2.82e-01 91.7% 94.9%
D4 medium residues 240-348
PDB
Domain cluster: representative
CATH (2)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1c7uA01 3.40.1810.10 Alpha Beta › 3-Layer(aba) Sandwich › SRF-like › Transcription factor, MADS-box 0.55 23.0 2.92e-01 78.0% 61.9%
6b1zA02 3.90.800.10 Alpha Beta › Alpha-Beta Complex › Glutamyl-tRNA Synthetase; domain 3 › Glutamyl-tRNA Synthetase; Domain 3 0.53 28.0 2.73e-01 86.2% 41.9%
D5 medium residues 349-526_711-756
PDB
CATH (13)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3fvyA03 3.30.70.2600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.63 17.0 3.00e-01 75.0% 69.3%
4bzaA01 3.10.20.310 Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac 0.59 20.0 3.64e-01 75.4% 100.0%
6wimA02 3.10.20.310 Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac 0.59 22.0 3.68e-01 71.0% 100.0%
5uayA01 3.10.20.310 Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac 0.56 21.0 3.34e-01 72.8% 89.0%
6j09A04 3.10.20.310 Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac 0.55 21.0 3.52e-01 70.5% 100.0%
4k3bA02 3.10.20.310 Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac 0.55 23.0 3.60e-01 88.8% 100.0%
2x8xX02 3.10.20.310 Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac 0.55 21.0 3.48e-01 89.3% 100.0%
4k3cA01 3.10.20.310 Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac 0.55 22.0 3.56e-01 87.9% 100.0%
2qdfA02 3.10.20.310 Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac 0.54 22.0 3.52e-01 88.4% 100.0%
3og5A01 3.10.20.310 Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac 0.53 22.0 3.41e-01 88.8% 97.6%
5efrA01 3.10.20.310 Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac 0.53 21.0 3.41e-01 71.0% 100.0%
4k3bA03 3.10.20.310 Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac 0.51 22.0 3.41e-01 83.9% 100.0%
2pjsA01 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.50 24.0 3.26e-01 80.8% 90.2%
ECOD (19)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3520104 3121.1.1.0 a+b duplicates or obligate multimers › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain 0.59 24.0 3.79e-01 88.8% 100.0%
3575511 3121.1.1.0 a+b duplicates or obligate multimers › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain 0.58 24.0 3.57e-01 89.3% 86.3%
3839149 3121.1.1.1 a+b duplicates or obligate multimers › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › POTRA 0.57 24.0 3.74e-01 87.9% 100.0%
4541918 3121.1.1.1 a+b duplicates or obligate multimers › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › POTRA 0.57 22.0 3.64e-01 90.2% 100.0%
4258146 3121.1.1.1 a+b duplicates or obligate multimers › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › POTRA 0.57 22.0 3.62e-01 71.0% 98.8%
4473482 3121.1.1.2 a+b duplicates or obligate multimers › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › POTRA_1 0.56 22.0 3.40e-01 91.1% 89.4%
3425922 3121.1.1.8 a+b duplicates or obligate multimers › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › POTRA1_3_Toc75 0.56 25.0 3.75e-01 91.1% 100.0%
3166208 3121.1.1.4 a+b duplicates or obligate multimers › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › POTRA_TamA_1 0.56 22.0 3.61e-01 83.0% 100.0%
4887533 3121.1.1.1 a+b duplicates or obligate multimers › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › POTRA 0.56 24.0 3.39e-01 89.3% 82.7%
1393421 3121.1.1.1 a+b duplicates or obligate multimers › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › POTRA 0.55 23.0 3.59e-01 91.1% 97.7%
3296275 3121.1.1.1 a+b duplicates or obligate multimers › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › POTRA 0.55 23.0 3.60e-01 85.7% 100.0%
4492160 3121.1.1.0 a+b duplicates or obligate multimers › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain 0.55 23.0 3.59e-01 85.3% 100.0%
4115098 3121.1.1.1 a+b duplicates or obligate multimers › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › POTRA 0.55 23.0 3.58e-01 91.1% 100.0%
389297 3121.1.1.3 a+b duplicates or obligate multimers › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › POTRA_2 0.54 22.0 3.51e-01 85.7% 100.0%
2547933 3121.1.1.1 a+b duplicates or obligate multimers › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › POTRA 0.54 22.0 3.49e-01 90.6% 97.6%
4872716 3121.1.1.4 a+b duplicates or obligate multimers › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › POTRA_TamA_1 0.53 22.0 3.48e-01 91.5% 97.7%
4881206 3121.1.1.1 a+b duplicates or obligate multimers › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › POTRA 0.53 21.0 3.42e-01 81.7% 96.5%
4559006 3121.1.1.0 a+b duplicates or obligate multimers › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain 0.52 20.0 3.20e-01 90.2% 100.0%
4973218 810.1.1.2 a+b two layers › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › GGACT 0.52 27.0 3.55e-01 99.6% 92.2%