BML_08012017_9_75m_scaffold_2_prodigal-single.1XX__00398

Bact-Vir

BML_08012017_9_75m_scaffold_2_prodigal-single.1__X__X__00398

Identity

94.2 mean pLDDT

View cluster (5 members)

Download PDB Download Scores JSON

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-174

PDB

Domain cluster: rep: IMGVR_UViG_3300032111_000014-3300032111-Ga0326321_100003366__D3-161

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF02310.25 best	B12-binding	40.3	3.70e-10	57.6%	66.1%

D2 medium residues 432-570

PDB

Domain cluster: representative

CATH (10)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3e3vA03	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.63	24.0	3.70e-01	80.6%	85.7%
3vayA02	1.20.120.1600	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) ›	0.59	37.0	4.51e-01	88.5%	98.9%
4o6yB00	1.20.120.1770	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) ›	0.59	48.0	4.18e-01	87.1%	91.9%
5dikA00	1.20.1290.10	Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like	0.55	30.0	3.37e-01	95.0%	66.1%
3sqiA01	1.10.150.540	Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 ›	0.54	29.0	3.39e-01	93.5%	71.7%
3if8B02	1.20.58.730	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.54	31.0	3.53e-01	78.4%	76.0%
3nf2A00	1.10.600.10	Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase	0.54	45.0	3.42e-01	99.3%	37.6%
5ulcX00	1.20.920.10	Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like	0.51	32.0	3.41e-01	87.1%	71.3%
2kjgA00	1.20.120.970	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) ›	0.50	27.0	3.08e-01	81.3%	68.7%
4jrrB00	3.40.30.10	Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin	0.50	36.0	3.32e-01	93.5%	56.5%

ECOD (2)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4190838	101.11.1.1 ↗	alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › PNPase	0.51	27.0	3.08e-01	70.5%	68.0%
4038279	1037.1.1.1 ↗	alpha bundles › Prolipoprotein diacylglyceryl transferase › Prolipoprotein diacylglyceryl transferase › Prolipoprotein diacylglyceryl transferase › LGT	0.50	37.0	2.98e-01	77.7%	68.3%

D3 medium residues 571-640

PDB

Domain cluster: representative

CATH (4)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4jgpA02	3.30.450.20	Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain	0.68	41.0	3.72e-01	100.0%	43.4%
1rvkA01	3.30.390.10	Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain	0.60	49.0	4.22e-01	92.9%	87.9%
3d7jA00	3.30.479.10	Alpha Beta › 2-Layer Sandwich › Tetrahydropterin Synthase; Chain A › 6-pyruvoyl tetrahydropterin synthase/QueD	0.56	48.0	3.89e-01	95.7%	87.3%
4fzlA02	3.30.450.400	Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Colicin M, catalytic domain	0.54	39.0	3.05e-01	100.0%	34.9%

ECOD (3)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3235657	3567.1.1.0 ↗	a+b duplicates or obligate multimers › MPER trimer › MPER trimer › MPER trimer	0.57	35.0	4.09e-01	94.3%	95.6%
4961400	218.1.1.0 ↗	a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like	0.56	45.0	4.20e-01	94.3%	97.9%
3508879	314.1.1.0 ↗	a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases	0.53	43.0	3.32e-01	95.7%	69.7%