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BML_08012017_9_75m_scaffold_2_prodigal-single.1__X__X__00402
Bact-VirBML_08012017_9_75m_scaffold_2_prodigal-single.1__X__X__00402
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 15-109_172-182
Domain cluster:
representative
CATH (14)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4nhxA01 | 2.60.120.620 | Mainly Beta › Sandwich › Jelly Rolls › q2cbj1_9rhob like domain | 0.81 | 77.0 | 5.87e-01 | 100.0% | 69.8% |
| 4nhxA02 | 2.60.120.620 | Mainly Beta › Sandwich › Jelly Rolls › q2cbj1_9rhob like domain | 0.77 | 71.0 | 5.37e-01 | 99.1% | 66.4% |
| 5zm4B00 | 2.60.120.620 | Mainly Beta › Sandwich › Jelly Rolls › q2cbj1_9rhob like domain | 0.72 | 66.0 | 4.81e-01 | 100.0% | 71.1% |
| 7vjvA01 | 2.60.120.590 | Mainly Beta › Sandwich › Jelly Rolls › Alpha-ketoglutarate-dependent dioxygenase AlkB-like | 0.68 | 63.0 | 4.96e-01 | 100.0% | 77.3% |
| 4qkbA00 | 2.60.120.590 | Mainly Beta › Sandwich › Jelly Rolls › Alpha-ketoglutarate-dependent dioxygenase AlkB-like | 0.67 | 61.0 | 5.02e-01 | 100.0% | 78.3% |
| 2iuwA00 | 2.60.120.590 | Mainly Beta › Sandwich › Jelly Rolls › Alpha-ketoglutarate-dependent dioxygenase AlkB-like | 0.66 | 60.0 | 4.80e-01 | 100.0% | 79.0% |
| 2a1xA00 | 2.60.120.620 | Mainly Beta › Sandwich › Jelly Rolls › q2cbj1_9rhob like domain | 0.64 | 59.0 | 4.41e-01 | 100.0% | 70.0% |
| 2jigA01 | 2.60.120.620 | Mainly Beta › Sandwich › Jelly Rolls › q2cbj1_9rhob like domain | 0.64 | 58.0 | 4.63e-01 | 100.0% | 85.4% |
| 3qwuA01 | 3.10.450.740 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.61 | 28.0 | 3.81e-01 | 70.8% | 91.5% |
| 4nkwA00 | 1.10.630.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 | 0.54 | 46.0 | 3.08e-01 | 97.2% | 59.9% |
| 4uhiA01 | 1.10.630.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 | 0.53 | 44.0 | 3.02e-01 | 93.4% | 78.3% |
| 2wnyA00 | 3.30.1440.10 | Alpha Beta › 2-Layer Sandwich › 50s Ribosomal Protein L5; Chain: A, › Ribosomal protein L5 | 0.51 | 37.0 | 3.48e-01 | 84.9% | 59.9% |
| 6j95A01 | 1.10.630.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 | 0.50 | 41.0 | 2.78e-01 | 89.6% | 38.4% |
| 6torA01 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.50 | 35.0 | 3.19e-01 | 71.7% | 91.7% |
ECOD (11)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3226511 | 10.12.1.54 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › 2OG-FeII_Oxy_4 | 0.82 | 78.0 | 5.85e-01 | 100.0% | 69.5% |
| 1411393 | 10.12.1.54 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › 2OG-FeII_Oxy_4 | 0.81 | 77.0 | 5.83e-01 | 100.0% | 68.6% |
| 3488931 | 10.12.1.44 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Ofd1_CTDD | 0.78 | 70.0 | 5.24e-01 | 98.1% | 74.7% |
| 3496981 | 10.12.1.0 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix | 0.77 | 70.0 | 5.27e-01 | 98.1% | 68.3% |
| 3245231 | 10.12.1.51 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › 2OG-FeII_Oxy_2 | 0.68 | 63.0 | 4.82e-01 | 100.0% | 67.4% |
| 3207684 | 10.12.1.51 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › 2OG-FeII_Oxy_2 | 0.66 | 61.0 | 4.62e-01 | 100.0% | 68.8% |
| 3293814 | 10.12.1.51 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › 2OG-FeII_Oxy_2 | 0.66 | 60.0 | 4.62e-01 | 100.0% | 74.7% |
| 3597906 | 10.12.1.0 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix | 0.63 | 57.0 | 4.34e-01 | 100.0% | 68.6% |
| 3868505 | 10.12.1.51 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › 2OG-FeII_Oxy_2 | 0.61 | 55.0 | 4.25e-01 | 100.0% | 65.0% |
| 3290541 | 243.3.1.3 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › PepSY | 0.56 | 26.0 | 3.23e-01 | 72.6% | 69.2% |
| 3445191 | 304.8.1.45 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › bHLH-TF_ACT-like_plant | 0.50 | 26.0 | 2.99e-01 | 100.0% | 68.0% |
D2
medium
residues 110-171_183-238
Domain cluster:
rep: NC_070829.1__YP_010655600.1__PP630_gp109__00109__D105-215
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF13640.13 best | 2OG-FeII_Oxy_3 | 39.3 | 1.40e-09 | 76.3% | 90.8% |
| PF13661.13 | 2OG-FeII_Oxy_4 | 33.6 | 6.30e-08 | 61.0% | 54.1% |
CATH (15)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3kt7A01 | 2.60.120.620 | Mainly Beta › Sandwich › Jelly Rolls › q2cbj1_9rhob like domain | 0.76 | 63.0 | 4.82e-01 | 86.4% | 48.0% |
| 4nhxA01 | 2.60.120.620 | Mainly Beta › Sandwich › Jelly Rolls › q2cbj1_9rhob like domain | 0.75 | 60.0 | 4.75e-01 | 85.6% | 44.1% |
| 4ylmX00 | 3.60.130.10 | Alpha Beta › 4-Layer Sandwich › Double-stranded beta-helix › Clavaminate synthase-like | 0.66 | 55.0 | 4.15e-01 | 88.1% | 64.2% |
| 1sq4A02 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.65 | 40.0 | 3.91e-01 | 78.8% | 57.1% |
| 6sk6A00 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.57 | 47.0 | 3.62e-01 | 89.0% | 67.8% |
| 7lyuB02 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.56 | 41.0 | 3.79e-01 | 77.1% | 74.1% |
| 3on7B00 | 2.60.120.330 | Mainly Beta › Sandwich › Jelly Rolls › B-lactam Antibiotic, Isopenicillin N Synthase; Chain | 0.56 | 48.0 | 3.64e-01 | 93.2% | 42.4% |
| 2dduA03 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.55 | 40.0 | 3.73e-01 | 78.0% | 72.9% |
| 4hltA02 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.54 | 45.0 | 4.04e-01 | 89.8% | 71.8% |
| 2e26A02 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.53 | 39.0 | 3.59e-01 | 78.0% | 70.3% |
| 1o7fA01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.52 | 36.0 | 3.29e-01 | 77.1% | 52.9% |
| 4zelB01 | 2.60.120.310 | Mainly Beta › Sandwich › Jelly Rolls › Copper type II, ascorbate-dependent monooxygenase, N-terminal domain | 0.52 | 38.0 | 3.65e-01 | 78.0% | 91.0% |
| 4indA03 | 2.60.120.1330 | Mainly Beta › Sandwich › Jelly Rolls › | 0.51 | 40.0 | 4.06e-01 | 84.7% | 88.2% |
| 4um8B02 | 2.60.40.1510 | Mainly Beta › Sandwich › Immunoglobulin-like › ntegrin, alpha v. Chain A, domain 3 | 0.50 | 36.0 | 3.50e-01 | 76.3% | 87.1% |
| 1p5uB00 | 2.60.40.1090 | Mainly Beta › Sandwich › Immunoglobulin-like › Fimbrial-type adhesion domain | 0.50 | 37.0 | 3.45e-01 | 77.1% | 81.9% |
ECOD (19)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4087536 | 10.12.1.54 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › 2OG-FeII_Oxy_4 | 0.74 | 61.0 | 4.77e-01 | 84.7% | 46.2% |
| 3592362 | 10.12.1.0 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix | 0.67 | 59.0 | 4.24e-01 | 94.1% | 48.6% |
| 3694503 | 10.12.1.44 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Ofd1_CTDD | 0.66 | 51.0 | 3.73e-01 | 79.7% | 32.9% |
| 4586504 | 11.1.5.85 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › PFF1_C | 0.58 | 44.0 | 3.68e-01 | 81.4% | 55.6% |
| 3602332 | 11.1.5.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f | 0.58 | 42.0 | 4.06e-01 | 77.1% | 87.7% |
| 1681795 | 10.32.1.53 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › GalBD_like | 0.56 | 41.0 | 3.47e-01 | 77.1% | 60.4% |
| 3397231 | 10.2.1.18 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Cu2_monooxygen | 0.55 | 41.0 | 3.74e-01 | 78.0% | 91.9% |
| 4989055 | 11.1.5.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f | 0.55 | 40.0 | 3.87e-01 | 78.0% | 82.7% |
| 3708356 | 3156.1.1.0 ↗ | beta sandwiches › Cupredoxin-like › Cupredoxin-related › Cupredoxin-related | 0.55 | 38.0 | 4.24e-01 | 77.1% | 100.0% |
| 4937085 | 11.1.5.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f | 0.55 | 40.0 | 3.93e-01 | 76.3% | 92.0% |
| 3909301 | 10.32.1.77 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Reelin_subrepeat-B | 0.54 | 40.0 | 3.95e-01 | 77.1% | 92.0% |
| 2559846 | 10.32.1.77 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Reelin_subrepeat-B | 0.54 | 40.0 | 3.72e-01 | 78.8% | 70.3% |
| 3700818 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.52 | 38.0 | 3.34e-01 | 76.3% | 71.7% |
| 3859104 | 10.2.1.18 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Cu2_monooxygen | 0.52 | 38.0 | 3.53e-01 | 78.8% | 85.6% |
| 3897045 | 10.4.1.0 ↗ | beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain | 0.52 | 37.0 | 3.94e-01 | 75.4% | 90.5% |
| 3704230 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.51 | 37.0 | 3.88e-01 | 77.1% | 83.6% |
| 4932870 | 10.1.2.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) | 0.51 | 33.0 | 3.82e-01 | 94.1% | 95.0% |
| 5038400 | 10.1.2.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) | 0.50 | 39.0 | 3.29e-01 | 83.1% | 58.1% |
| 3890780 | 11.1.5.37 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › muHD | 0.50 | 38.0 | 3.90e-01 | 79.7% | 89.1% |