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BML_08012017_9_75m_scaffold_2_prodigal-single.1__X__X__00420
Bact-VirBML_08012017_9_75m_scaffold_2_prodigal-single.1__X__X__00420
Identity
- Kingdom:
- phage
Quality
84.8
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-258
Domain cluster:
rep: SR-VP_4-6_scaffold_141_2630357_prodigal-single.1__X__X__00142__D170-386
CATH (35)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1efaA02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.77 | 36.0 | 5.14e-01 | 96.9% | 91.3% |
| 6xehA01 | 3.40.50.11230 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.76 | 35.0 | 5.22e-01 | 95.7% | 100.0% |
| 5hsgA01 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.76 | 36.0 | 5.08e-01 | 96.9% | 92.0% |
| 3d02A01 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.75 | 37.0 | 4.79e-01 | 96.9% | 81.0% |
| 2h3hA01 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.74 | 37.0 | 4.77e-01 | 96.9% | 81.8% |
| 4wzzA01 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.73 | 37.0 | 4.56e-01 | 96.9% | 74.7% |
| 1tjyA01 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.73 | 36.0 | 4.51e-01 | 96.5% | 73.6% |
| 2b99C00 | 3.40.50.960 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Lumazine/riboflavin synthase | 0.73 | 38.0 | 4.91e-01 | 96.9% | 84.9% |
| 4xvhA02 | 3.40.50.1110 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase | 0.71 | 59.0 | 6.31e-01 | 96.1% | 98.2% |
| 4s1pA00 | 3.40.50.1110 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase | 0.71 | 49.0 | 5.80e-01 | 94.2% | 97.8% |
| 5braA02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.66 | 32.0 | 4.26e-01 | 80.9% | 83.8% |
| 3hs3A02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.66 | 33.0 | 4.34e-01 | 95.3% | 86.2% |
| 6tm3A01 | 3.40.50.10280 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Methylene-tetrahydromethanopterin dehydrogenase, N-terminal domain | 0.64 | 31.0 | 4.16e-01 | 97.7% | 84.1% |
| 4q0mA01 | 3.40.50.1170 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › L-asparaginase, N-terminal domain | 0.64 | 35.0 | 3.94e-01 | 96.9% | 66.3% |
| 4yrbA00 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.63 | 42.0 | 4.67e-01 | 95.7% | 82.5% |
| 6uqyB01 | 3.40.50.1110 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase | 0.63 | 56.0 | 5.50e-01 | 92.6% | 99.6% |
| 3bzwF00 | 3.40.50.1110 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase | 0.62 | 55.0 | 5.66e-01 | 97.7% | 96.3% |
| 5tdeA03 | 3.40.50.261 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Succinyl-CoA synthetase domains | 0.62 | 37.0 | 4.28e-01 | 94.6% | 79.9% |
| 2pk3A01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.59 | 43.0 | 4.64e-01 | 95.3% | 86.8% |
| 7y7oA01 | 3.40.390.30 | Alpha Beta › 3-Layer(aba) Sandwich › Collagenase (Catalytic Domain) › "Metalloproteases (""zincins""), catalytic domain" | 0.56 | 26.0 | 3.47e-01 | 96.1% | 78.3% |
| 3nivC02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.55 | 28.0 | 3.96e-01 | 81.7% | 100.0% |
| 3l77A00 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.54 | 44.0 | 4.61e-01 | 96.1% | 91.5% |
| 2qi2A02 | 3.30.420.60 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › eRF1 domain 2 | 0.54 | 26.0 | 3.67e-01 | 96.1% | 97.4% |
| 1w6uD00 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.54 | 45.0 | 4.34e-01 | 94.9% | 78.4% |
| 5iz4A00 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.54 | 46.0 | 4.68e-01 | 95.7% | 91.9% |
| 4re2A00 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.53 | 46.0 | 3.75e-01 | 91.8% | 84.2% |
| 2wjwA02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.53 | 31.0 | 3.81e-01 | 94.2% | 89.0% |
| 3gycA00 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.53 | 47.0 | 4.18e-01 | 96.9% | 96.6% |
| 3r4vA01 | 3.40.50.1440 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Tubulin/FtsZ, GTPase domain | 0.52 | 37.0 | 3.54e-01 | 97.3% | 62.9% |
| 5l3qA02 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.52 | 36.0 | 4.06e-01 | 92.2% | 88.8% |
| 3ld9A00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.52 | 36.0 | 4.18e-01 | 94.2% | 97.9% |
| 2jieA00 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.51 | 44.0 | 3.70e-01 | 91.4% | 85.8% |
| 2ocdB01 | 3.40.50.1170 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › L-asparaginase, N-terminal domain | 0.51 | 36.0 | 4.04e-01 | 96.9% | 91.7% |
| 4cqbA02 | 3.20.20.140 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases | 0.50 | 45.0 | 4.33e-01 | 97.3% | 99.0% |
| 1khtB00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.50 | 35.0 | 4.05e-01 | 93.0% | 95.8% |
ECOD (20)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2643834 | 2007.1.3.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like | 0.75 | 35.0 | 4.99e-01 | 96.9% | 91.2% |
| 2572660 | 2007.5.1.8 ↗ | a/b three-layered sandwiches › Flavodoxin-like › SGNH hydrolase › SGNH hydrolase › Lipase_GDSL_2 | 0.75 | 59.0 | 6.53e-01 | 96.5% | 98.6% |
| 4664980 | 2007.1.2.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I | 0.74 | 37.0 | 4.28e-01 | 96.9% | 64.6% |
| 4224084 | 2007.1.2.11 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › Peripla_BP_4 | 0.73 | 37.0 | 4.28e-01 | 96.9% | 64.7% |
| 4975785 | 2007.1.13.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Lumazine synthase › DMRL_synthase | 0.72 | 38.0 | 4.81e-01 | 97.3% | 83.9% |
| 3957414 | 2496.1.1.2 ↗ | a/b three-layered sandwiches › SpoIIaa-like › SpoIIaa-like › SpoIIaa-like › STAS | 0.66 | 28.0 | 4.26e-01 | 93.8% | 92.7% |
| 5049925 | 2007.3.1.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Succinyl-CoA synthetase domains › Succinyl-CoA synthetase domains | 0.65 | 41.0 | 5.06e-01 | 98.8% | 95.3% |
| 5065263 | 2007.3.1.6 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Succinyl-CoA synthetase domains › Succinyl-CoA synthetase domains › Ligase_CoA_2 | 0.65 | 44.0 | 5.25e-01 | 100.0% | 97.8% |
| 5050825 | 2007.3.1.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Succinyl-CoA synthetase domains › Succinyl-CoA synthetase domains | 0.64 | 44.0 | 5.15e-01 | 100.0% | 97.8% |
| 3100301 | 2500.1.1.5 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › NRDD | 0.60 | 44.0 | 3.27e-01 | 75.1% | 54.5% |
| 3318664 | 2008.1.1.151 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PF28664 | 0.59 | 37.0 | 4.53e-01 | 99.6% | 95.8% |
| 5043017 | 2006.1.3.0 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain | 0.59 | 28.0 | 4.08e-01 | 80.5% | 98.3% |
| 4999143 | 2005.1.1.3 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Usp | 0.56 | 28.0 | 3.50e-01 | 92.2% | 74.5% |
| 5039931 | 2005.1.1.3 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Usp | 0.55 | 33.0 | 3.73e-01 | 87.5% | 76.3% |
| 7867 | 246.2.1.11 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos_3 | 0.54 | 40.0 | 4.02e-01 | 73.5% | 96.1% |
| 4552739 | 2002.1.1.17 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › PEPcase | 0.52 | 43.0 | 2.93e-01 | 84.4% | 53.9% |
| 5079907 | 2500.1.1.0 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel | 0.52 | 42.0 | 3.18e-01 | 83.7% | 96.1% |
| 4401801 | 2002.1.1.17 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › PEPcase | 0.51 | 42.0 | 2.84e-01 | 84.0% | 52.0% |
| 4975222 | 2004.1.1.191 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_17 | 0.50 | 36.0 | 4.04e-01 | 91.8% | 93.0% |
| 4998506 | 2003.1.5.66 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_11 | 0.50 | 32.0 | 3.55e-01 | 96.9% | 79.5% |