Back to structures

BML_08042016_6_5m_scaffold_14_prodigal-single.1__X__X__00029

Bact-Vir

BML_08042016_6_5m_scaffold_14_prodigal-single.1__X__X__00029

Identity

Kingdom:
phage

Quality

91.9 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-66
PDB
Domain cluster: representative
CATH (42)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1qqgA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.70 61.0 5.27e-01 96.9% 99.0%
1faoA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.69 60.0 5.22e-01 98.5% 95.0%
3cxbB00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.68 58.0 5.06e-01 98.5% 98.1%
1mi1A01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.68 57.0 4.95e-01 96.9% 100.0%
3tfmA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.67 58.0 5.06e-01 96.9% 96.0%
1btkA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.66 58.0 4.41e-01 100.0% 75.6%
7byjA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.66 57.0 5.09e-01 98.5% 94.7%
5wb2B00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.65 49.0 4.80e-01 90.8% 74.0%
1eqtA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.65 49.0 4.92e-01 87.7% 80.6%
1zxtA01 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.64 50.0 5.18e-01 89.2% 91.8%
2yf0A01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.63 54.0 4.93e-01 96.9% 98.9%
2cofA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.63 52.0 4.54e-01 96.9% 83.2%
1nr4C00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.62 49.0 4.97e-01 87.7% 86.4%
3fssA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.62 52.0 4.87e-01 100.0% 96.5%
2gu3A02 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.61 42.0 4.26e-01 83.1% 73.0%
4qxaB00 2.30.29.230 Mainly Beta › Roll › PH-domain like › 0.60 51.0 4.07e-01 100.0% 76.9%
1a15A00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.60 46.0 4.58e-01 89.2% 80.6%
5cbeE00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.60 46.0 4.66e-01 86.2% 82.8%
2gu3A01 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.60 39.0 3.96e-01 81.5% 67.7%
3u12A00 2.30.29.180 Mainly Beta › Roll › PH-domain like › Ubiquitin carboxyl-terminal hydrolase 26/29/37, pleckstrin homology-like domain 0.60 49.0 4.36e-01 98.5% 100.0%
2ls0101 2.40.50.670 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Target recognition domain of lytic exoenzyme 0.60 48.0 4.15e-01 95.4% 93.9%
1x0tA02 6.20.50.20 Special › Other non-globular › N-terminal domain of TfIIb › 0.60 40.0 4.58e-01 80.0% 100.0%
3aqoA02 3.30.1360.200 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › 0.58 50.0 4.00e-01 100.0% 98.6%
2ewvA01 3.30.450.90 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.57 41.0 3.54e-01 75.4% 83.3%
2nlkA02 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.57 43.0 2.85e-01 80.0% 31.2%
2z4dA00 2.30.29.70 Mainly Beta › Roll › PH-domain like › Proteasomal ubiquitin receptor Rpn13/ADRM1 0.57 42.0 3.80e-01 81.5% 99.0%
5fl3A01 3.30.450.90 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.56 40.0 3.52e-01 75.4% 84.0%
4ks7A01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.56 40.0 3.45e-01 73.8% 87.8%
1vclA01 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.56 40.0 3.25e-01 80.0% 96.0%
3fxzA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.56 39.0 3.40e-01 73.8% 87.8%
2h1eA02 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.55 38.0 4.01e-01 72.3% 100.0%
3ulbA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 47.0 4.41e-01 100.0% 85.5%
4o38A01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.55 40.0 3.48e-01 76.9% 96.9%
2w9jA00 3.30.720.10 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Signal recognition particle alu RNA binding heterodimer, srp9/1 0.54 41.0 4.09e-01 89.2% 100.0%
4h75A00 2.80.10.70 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › Spindlin/Ssty 0.54 41.0 3.05e-01 87.7% 51.3%
1pwaA00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.53 44.0 3.69e-01 98.5% 96.7%
1fotA02 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.53 35.0 3.09e-01 70.8% 89.7%
6vp6A03 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.52 42.0 2.69e-01 89.2% 18.4%
4lduA02 2.40.330.10 Mainly Beta › Beta Barrel › At1g16640 B3 domain › DNA-binding pseudobarrel domain 0.52 35.0 3.07e-01 70.8% 62.3%
3c4bA02 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.51 37.0 3.69e-01 90.8% 76.1%
2m7oA00 3.10.450.400 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Uncharacterised protein PF15513, DUF4651 0.51 32.0 3.19e-01 84.6% 58.6%
5os9A00 2.40.330.10 Mainly Beta › Beta Barrel › At1g16640 B3 domain › DNA-binding pseudobarrel domain 0.51 34.0 2.88e-01 70.8% 54.8%
ECOD (74)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3625334 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.71 63.0 4.70e-01 98.5% 63.1%
3222570 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.71 61.0 5.07e-01 96.9% 91.3%
3252821 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.71 63.0 5.28e-01 100.0% 90.9%
3939988 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.70 63.0 5.06e-01 100.0% 80.0%
3626366 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.70 61.0 5.14e-01 98.5% 87.3%
3903728 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.70 61.0 5.31e-01 98.5% 95.0%
3570692 220.1.1.8 beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.70 61.0 5.09e-01 100.0% 85.2%
3270411 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.69 61.0 5.07e-01 100.0% 93.0%
3891749 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.69 60.0 4.73e-01 98.5% 73.6%
3913573 220.1.1.30 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_BEACH 0.69 59.0 4.91e-01 98.5% 91.7%
3591463 220.1.1.8 beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.69 60.0 5.05e-01 100.0% 84.3%
3583844 220.1.1.30 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_BEACH 0.69 59.0 4.58e-01 98.5% 85.3%
3877048 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.69 59.0 4.91e-01 96.9% 86.1%
3249490 220.1.1.8 beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.69 61.0 5.06e-01 100.0% 87.0%
3253063 220.1.1.8 beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.69 59.0 4.90e-01 96.9% 85.2%
3899369 220.1.1.8 beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.69 60.0 4.63e-01 100.0% 80.7%
3699518 220.1.1.8 beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.68 60.0 4.90e-01 100.0% 77.6%
3531579 220.1.1.8 beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.68 60.0 4.56e-01 100.0% 78.1%
4943079 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.68 59.0 4.55e-01 100.0% 65.8%
3704939 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.68 61.0 5.43e-01 100.0% 78.9%
3931704 220.1.1.20 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_TFIIH 0.68 58.0 4.95e-01 98.5% 98.2%
3247407 220.1.1.50 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_17 0.67 58.0 4.76e-01 100.0% 85.6%
3574847 220.1.1.20 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_TFIIH 0.67 58.0 4.49e-01 96.9% 83.4%
3570527 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.67 59.0 4.73e-01 100.0% 77.7%
3390046 220.1.1.5 beta barrels › PH domain-like › PH domain-like › PH domain-like › PID 0.67 57.0 4.18e-01 98.5% 67.6%
3785371 220.1.1.8 beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.67 57.0 4.62e-01 100.0% 84.4%
3742004 220.1.1.30 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_BEACH 0.67 57.0 4.71e-01 100.0% 88.0%
4926953 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.66 56.0 4.76e-01 98.5% 85.1%
3264240 220.1.1.30 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_BEACH 0.66 55.0 4.52e-01 96.9% 93.6%
3469923 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.65 55.0 4.88e-01 95.4% 100.0%
3263647 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.65 55.0 4.65e-01 100.0% 78.3%
3171728 220.1.1.8 beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.65 56.0 4.41e-01 100.0% 84.8%
5045772 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.65 56.0 4.74e-01 100.0% 87.8%
3743938 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.65 55.0 4.52e-01 100.0% 82.3%
4019656 220.1.1.211 beta barrels › PH domain-like › PH domain-like › PH domain-like › DUF7612 0.64 55.0 4.43e-01 100.0% 94.8%
3704921 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.64 55.0 4.28e-01 100.0% 85.8%
3269549 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.64 56.0 4.28e-01 100.0% 66.5%
3880422 1170.1.1.1 beta barrels › IL8-related › IL8-related › IL8 › IL8 0.64 50.0 4.95e-01 89.2% 80.9%
3483205 220.1.1.58 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH-GRAM_MTMR6-like 0.64 56.0 4.55e-01 98.5% 76.0%
3472026 220.1.1.27 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_RBD 0.64 53.0 4.52e-01 98.5% 85.8%
3411942 220.1.1.58 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH-GRAM_MTMR6-like 0.64 56.0 4.53e-01 100.0% 73.8%
3744190 220.1.1.43 beta barrels › PH domain-like › PH domain-like › PH domain-like › SIN1_PH 0.64 55.0 4.55e-01 98.5% 81.7%
4962459 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.64 55.0 5.04e-01 98.5% 89.8%
3739939 220.1.1.29 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_3 0.64 55.0 4.34e-01 98.5% 76.3%
3530034 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.64 54.0 4.49e-01 98.5% 79.2%
3514476 220.1.1.27 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_RBD 0.63 53.0 4.04e-01 100.0% 68.0%
3912274 1170.1.1.1 beta barrels › IL8-related › IL8-related › IL8 › IL8 0.63 51.0 4.97e-01 89.2% 81.4%
3742330 220.1.1.8 beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.63 54.0 4.59e-01 100.0% 87.8%
3575394 220.1.1.27 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_RBD 0.63 53.0 4.20e-01 100.0% 86.7%
3475126 220.1.1.35 beta barrels › PH domain-like › PH domain-like › PH domain-like › IQ_SEC7_PH 0.63 53.0 4.04e-01 100.0% 67.1%
5031433 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.63 52.0 4.62e-01 96.9% 95.0%
3801512 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.62 54.0 4.49e-01 100.0% 78.3%
3929330 220.1.1.11 beta barrels › PH domain-like › PH domain-like › PH domain-like › Rpn13_ADRM1_Pru 0.62 53.0 4.34e-01 98.5% 84.6%
3191989 220.1.1.8 beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.62 53.0 4.22e-01 100.0% 81.4%
3627615 220.1.1.58 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH-GRAM_MTMR6-like 0.62 52.0 4.17e-01 100.0% 66.2%
5063609 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.61 53.0 4.54e-01 98.5% 89.8%
3563547 220.1.1.27 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_RBD 0.61 52.0 4.31e-01 100.0% 87.2%
4137634 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.61 53.0 4.76e-01 100.0% 76.8%
3767975 220.1.1.38 beta barrels › PH domain-like › PH domain-like › PH domain-like › UCH_N 0.61 52.0 4.40e-01 96.9% 87.3%
3271442 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.59 50.0 3.92e-01 100.0% 64.0%
136515 1170.1.1.1 beta barrels › IL8-related › IL8-related › IL8 › IL8 0.58 44.0 4.36e-01 87.7% 79.4%
3237220 220.1.1.84 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_15 0.57 48.0 4.12e-01 100.0% 89.6%
4929725 375.1.1.289 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › DUF5679 0.56 38.0 4.28e-01 83.1% 100.0%
3781077 375.1.1.26 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Rpr2 0.56 44.0 3.77e-01 84.6% 80.6%
3606500 375.8.1.1 few secondary structure elements › Rubredoxin-like › Zinc-binding domain of translation initiation factor 2 beta › Zinc-binding domain of translation initiation factor 2 beta › eIF-5_eIF-2B 0.56 42.0 4.38e-01 89.2% 88.3%
4379563 375.1.1.289 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › DUF5679 0.56 36.0 3.99e-01 83.1% 95.6%
4138935 4.1.1.241 beta barrels › SH3 › SH3 › SH3 › NifZ 0.56 45.0 4.37e-01 98.5% 82.7%
2439625 1170.1.1.1 beta barrels › IL8-related › IL8-related › IL8 › IL8 0.55 40.0 3.55e-01 86.2% 52.0%
3706766 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.54 44.0 2.86e-01 89.2% 66.6%
3270625 206.1.1.72 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase, Pkinase_fungal 0.54 44.0 2.79e-01 89.2% 60.9%
3940690 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.53 41.0 3.52e-01 84.6% 89.5%
3285829 4.1.1.425 beta barrels › SH3 › SH3 › SH3 › RNHCP 0.51 41.0 3.61e-01 93.8% 80.0%
3882656 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.50 40.0 2.55e-01 87.7% 97.5%
4101961 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.50 39.0 2.58e-01 90.8% 38.0%