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BML_08042016_6_5m_scaffold_14_prodigal-single.1__X__X__00036
Bact-VirBML_08042016_6_5m_scaffold_14_prodigal-single.1__X__X__00036
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-123_225-278
Domain cluster:
representative
CATH (30)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2q5cA01 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.69 | 37.0 | 4.89e-01 | 86.4% | 95.9% |
| 1mb3A00 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.66 | 43.0 | 5.12e-01 | 89.3% | 99.1% |
| 3kcnB00 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.64 | 44.0 | 4.88e-01 | 88.7% | 89.8% |
| 3cfyA00 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.62 | 42.0 | 4.80e-01 | 88.7% | 94.6% |
| 4ycsA00 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.60 | 41.0 | 4.85e-01 | 88.1% | 100.0% |
| 3r3pB00 | 3.40.960.10 | Alpha Beta › 3-Layer(aba) Sandwich › Endonuclease; Chain A › VSR Endonuclease | 0.60 | 34.0 | 4.37e-01 | 81.9% | 99.0% |
| 1qv9A01 | 3.40.50.10830 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › F420-dependent methylenetetrahydromethanopterin dehydrogenase (MTD) | 0.60 | 45.0 | 4.83e-01 | 89.3% | 90.9% |
| 3slrA01 | 3.40.50.1110 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase | 0.59 | 49.0 | 4.60e-01 | 88.7% | 90.8% |
| 5l3qA02 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.59 | 47.0 | 4.49e-01 | 83.6% | 91.7% |
| 3gdgA00 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.58 | 49.0 | 4.29e-01 | 89.8% | 86.9% |
| 3pdiA01 | 3.40.50.1980 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain | 0.58 | 41.0 | 4.35e-01 | 87.0% | 82.5% |
| 1mugA00 | 3.40.470.10 | Alpha Beta › 3-Layer(aba) Sandwich › Uracil-DNA Glycosylase, subunit E › Uracil-DNA glycosylase-like domain | 0.56 | 46.0 | 4.80e-01 | 87.6% | 95.2% |
| 1zunB01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.55 | 45.0 | 4.42e-01 | 88.7% | 94.4% |
| 1jx6A01 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.55 | 43.0 | 4.30e-01 | 97.2% | 80.2% |
| 1yzyA01 | 3.40.50.10840 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Putative sugar-binding, N-terminal domain | 0.54 | 46.0 | 4.18e-01 | 90.4% | 100.0% |
| 1f1jA00 | 3.40.50.1460 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.54 | 45.0 | 4.12e-01 | 88.7% | 97.0% |
| 5t3uB00 | 3.40.50.510 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphotransferase system, mannose-type IIA component | 0.54 | 38.0 | 4.28e-01 | 98.3% | 96.2% |
| 5c5cA02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.53 | 41.0 | 4.27e-01 | 81.4% | 99.4% |
| 3n70A00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.52 | 36.0 | 3.98e-01 | 98.3% | 87.3% |
| 1zu4A02 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.52 | 48.0 | 4.47e-01 | 99.4% | 88.1% |
| 4kfuA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.52 | 45.0 | 4.29e-01 | 93.8% | 100.0% |
| 3vbcA00 | 3.40.50.11530 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.52 | 37.0 | 4.13e-01 | 88.7% | 96.3% |
| 6f2xA01 | 3.40.50.1000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like | 0.51 | 41.0 | 4.40e-01 | 89.8% | 100.0% |
| 8sp0A01 | 3.40.50.10140 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Toll/interleukin-1 receptor homology (TIR) domain | 0.51 | 39.0 | 4.19e-01 | 89.8% | 92.9% |
| 2napA03 | 3.40.228.10 | Alpha Beta › 3-Layer(aba) Sandwich › Dimethylsulfoxide Reductase; domain 2 › Dimethylsulfoxide Reductase, domain 2 | 0.51 | 36.0 | 3.31e-01 | 71.8% | 77.7% |
| 1pdoA00 | 3.40.50.510 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphotransferase system, mannose-type IIA component | 0.51 | 36.0 | 4.11e-01 | 98.3% | 99.2% |
| 3iprA00 | 3.40.50.510 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphotransferase system, mannose-type IIA component | 0.51 | 37.0 | 4.11e-01 | 97.7% | 97.1% |
| 6k10A02 | 3.40.309.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 2 › Aldehyde Dehydrogenase; Chain A, domain 2 | 0.51 | 41.0 | 3.97e-01 | 85.3% | 98.0% |
| 3gdwB00 | 3.40.50.510 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphotransferase system, mannose-type IIA component | 0.50 | 36.0 | 4.03e-01 | 98.3% | 94.9% |
| 2nyuB00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.50 | 41.0 | 4.10e-01 | 87.0% | 86.8% |
ECOD (28)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1588516 | 323.1.1.0 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases | 0.64 | 37.0 | 3.82e-01 | 93.2% | 60.0% |
| 4951431 | 2007.1.14.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Chelatase-like › Oxidored_nitro | 0.62 | 38.0 | 4.26e-01 | 87.0% | 79.3% |
| 4422129 | 7591.1.1.1 ↗ | a/b three-layered sandwiches › Tetraacyldisaccharide 4'-kinase C-terminal domain › Tetraacyldisaccharide 4'-kinase C-terminal domain › Tetraacyldisaccharide 4'-kinase C-terminal domain › LpxK | 0.61 | 34.0 | 4.16e-01 | 97.2% | 86.4% |
| 4947380 | 2004.1.1.94 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ATP_bind_1 | 0.60 | 50.0 | 4.45e-01 | 87.0% | 100.0% |
| 3587277 | 2010.1.1.3 ↗ | a/b three-layered sandwiches › EDD domain › EDD domain › EDD domain › EIIA-man | 0.60 | 37.0 | 4.24e-01 | 88.7% | 82.3% |
| 4029325 | 2004.1.1.94 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ATP_bind_1 | 0.59 | 50.0 | 4.18e-01 | 89.3% | 98.3% |
| 3064238 | 2004.1.1.94 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ATP_bind_1 | 0.59 | 49.0 | 4.40e-01 | 88.7% | 96.0% |
| 3375691 | 2004.1.1.94 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ATP_bind_1 | 0.58 | 48.0 | 4.12e-01 | 88.1% | 85.6% |
| 3356491 | 2004.1.1.36 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Dynamin_N | 0.58 | 48.0 | 3.97e-01 | 89.3% | 88.6% |
| 4941226 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.58 | 35.0 | 4.08e-01 | 83.1% | 82.9% |
| 3588043 | 2010.1.1.0 ↗ | a/b three-layered sandwiches › EDD domain › EDD domain › EDD domain | 0.57 | 35.0 | 4.10e-01 | 88.7% | 85.6% |
| 3252117 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.57 | 47.0 | 3.99e-01 | 88.7% | 74.9% |
| 3718800 | 7568.1.1.0 ↗ | a/b three-layered sandwiches › BRCT domain › BRCT domain › BRCT domain | 0.55 | 34.0 | 4.08e-01 | 87.0% | 95.5% |
| 5055236 | 2007.1.4.3 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Phosphofructokinase N-terminal domain › NAD_kinase | 0.55 | 37.0 | 4.30e-01 | 86.4% | 99.2% |
| 3388356 | 2004.1.1.242 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF2972 | 0.55 | 51.0 | 4.20e-01 | 98.9% | 69.3% |
| 5072607 | 7592.1.1.0 ↗ | a/b three-layered sandwiches › CARF (CRISPR-associated Rossmann fold) domains › CARF (CRISPR-associated Rossmann fold) domains › CARF (CRISPR-associated Rossmann fold) domains | 0.54 | 39.0 | 4.43e-01 | 85.3% | 99.2% |
| 1907442 | 2010.1.1.3 ↗ | a/b three-layered sandwiches › EDD domain › EDD domain › EDD domain › EIIA-man | 0.54 | 38.0 | 4.31e-01 | 98.3% | 96.2% |
| 3973307 | 2007.1.14.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Chelatase-like | 0.54 | 44.0 | 4.67e-01 | 98.3% | 100.0% |
| 3174910 | 2004.1.1.162 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Rad51 | 0.54 | 48.0 | 4.08e-01 | 97.7% | 94.6% |
| 3588947 | 2010.1.1.3 ↗ | a/b three-layered sandwiches › EDD domain › EDD domain › EDD domain › EIIA-man | 0.54 | 37.0 | 4.21e-01 | 97.2% | 94.6% |
| 4962018 | 7512.1.1.0 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase | 0.53 | 44.0 | 4.40e-01 | 87.6% | 96.1% |
| 5070364 | 2004.1.1.146 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ATPase | 0.53 | 48.0 | 4.42e-01 | 98.9% | 96.6% |
| 5017118 | 7512.1.1.30 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_4 | 0.53 | 44.0 | 4.26e-01 | 88.7% | 91.5% |
| 4221017 | 2004.1.1.106 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › RapZ-like_N | 0.52 | 42.0 | 4.31e-01 | 86.4% | 96.0% |
| 3285935 | 7579.1.1.0 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases | 0.52 | 43.0 | 4.06e-01 | 88.7% | 90.5% |
| 4998774 | 2004.1.1.198 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23 | 0.51 | 42.0 | 3.09e-01 | 87.0% | 99.8% |
| 3983740 | 7579.1.1.29 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › UPF0227 | 0.51 | 41.0 | 4.13e-01 | 87.6% | 99.5% |
| 359061 | 2010.1.1.3 ↗ | a/b three-layered sandwiches › EDD domain › EDD domain › EDD domain › EIIA-man | 0.50 | 36.0 | 4.03e-01 | 98.3% | 94.9% |
D2
medium
residues 291-400
Domain cluster:
representative
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3o3mB01 | 1.20.1270.370 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.60 | 32.0 | 3.34e-01 | 91.8% | 55.3% |
| 1w98B02 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.54 | 38.0 | 3.82e-01 | 73.6% | 98.2% |
| 2etdA00 | 1.20.1440.20 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › LemA-like domain | 0.52 | 42.0 | 3.96e-01 | 89.1% | 82.3% |