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BML_08042016_6_5m_scaffold_14_prodigal-single.1__X__X__00213

Bact-Vir

BML_08042016_6_5m_scaffold_14_prodigal-single.1__X__X__00213

Identity

Kingdom:
phage

Quality

70.7 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 26-49_100-134
PDB
Domain cluster: representative
CATH (18)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6qp7A01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.83 43.0 2.49e-01 100.0% 6.2%
4q1vA01 2.140.10.30 Mainly Beta › 8 Propeller › Methanol Dehydrogenase; Chain A › Dipeptidylpeptidase IV, N-terminal domain 0.77 43.0 2.48e-01 100.0% 7.1%
6my0A02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.68 35.0 3.44e-01 98.3% 41.5%
3gw6A03 3.30.2460.10 Alpha Beta › 2-Layer Sandwich › Endo-n-acetylneuraminidase fold › Endo-n-acetylneuraminidase domain 0.67 49.0 4.99e-01 86.4% 82.5%
1t6aA02 3.30.310.120 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Rbstp2229 like protein 0.66 38.0 3.46e-01 96.6% 42.3%
3s5tA01 3.30.565.40 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Fervidobacterium nodosum Rt17-B1 like 0.61 38.0 2.89e-01 100.0% 24.8%
1a6aB01 3.10.320.10 Alpha Beta › Roll › Class II Histocompatibility Antigen, M Beta Chain; Chain B, domain 1 › Class II Histocompatibility Antigen, M Beta Chain; Chain B, domain 1 0.58 35.0 3.13e-01 100.0% 39.3%
4d8pB01 3.10.320.10 Alpha Beta › Roll › Class II Histocompatibility Antigen, M Beta Chain; Chain B, domain 1 › Class II Histocompatibility Antigen, M Beta Chain; Chain B, domain 1 0.58 35.0 2.95e-01 100.0% 34.3%
3gw6D02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 42.0 3.25e-01 86.4% 31.1%
4c92C00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.56 38.0 3.49e-01 98.3% 53.2%
1ffyA01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.56 40.0 2.43e-01 94.9% 10.9%
6tmfM00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.53 42.0 3.69e-01 94.9% 83.3%
1ohgA01 3.30.2400.10 Alpha Beta › 2-Layer Sandwich › Major capsid protein gp5 fold › Major capsid protein gp5 0.53 39.0 3.11e-01 84.7% 89.0%
4e5xG00 2.60.40.3530 Mainly Beta › Sandwich › Immunoglobulin-like › 0.53 37.0 3.14e-01 100.0% 44.4%
2l6mA00 3.30.160.400 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.53 37.0 3.14e-01 100.0% 43.6%
3uepA00 2.30.330.10 Mainly Beta › Roll › Surface presentation of antigens (SPOA) › SpoA-like 0.52 29.0 2.62e-01 96.6% 36.5%
2xzmJ00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.51 40.0 3.47e-01 94.9% 82.9%
1o9yC00 2.30.330.10 Mainly Beta › Roll › Surface presentation of antigens (SPOA) › SpoA-like 0.51 30.0 2.82e-01 98.3% 45.8%
ECOD (25)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3601924 511.1.1.0 ↗ beta sandwiches › Heat shock protein 70kD (HSP70), peptide-binding domain › Heat shock protein 70kD (HSP70), peptide-binding domain › Heat shock protein 70kD (HSP70), peptide-binding domain 0.72 56.0 4.03e-01 86.4% 56.6%
3940319 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.70 60.0 3.75e-01 100.0% 18.3%
3598349 5.1.5.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.66 54.0 3.27e-01 91.5% 28.4%
3716792 511.1.1.0 ↗ beta sandwiches › Heat shock protein 70kD (HSP70), peptide-binding domain › Heat shock protein 70kD (HSP70), peptide-binding domain › Heat shock protein 70kD (HSP70), peptide-binding domain 0.63 48.0 3.66e-01 84.7% 57.7%
2997715 11.13.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Leukocidin-like › Leukocidin-like › Leukocidin 0.59 49.0 3.18e-01 93.2% 68.1%
5029609 2004.1.1.42 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T2SSE 0.59 52.0 3.15e-01 100.0% 14.2%
4990821 7571.1.1.1 ↗ a/b three-layered sandwiches › Formyltransferase › Formyltransferase › Formyltransferase › Formyl_trans_N 0.59 40.0 2.64e-01 71.2% 76.7%
3633198 67.1.1.0 ↗ beta sandwiches › HSP40/DnaJ peptide-binding domain › HSP40/DnaJ peptide-binding domain › HSP40/DnaJ peptide-binding domain 0.59 48.0 4.29e-01 100.0% 62.2%
5019602 212.1.1.0 ↗ a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like 0.59 49.0 3.87e-01 89.8% 98.3%
5016531 11.1.1.347 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › T26-6p_Ig-like_dom_2 0.58 47.0 2.93e-01 94.9% 33.4%
4156867 385.1.1.5 ↗ few secondary structure elements › Cystine-knot cytokines › Cystine-knot cytokines › Cystine-knot cytokines › PDGF 0.55 39.0 3.06e-01 76.3% 36.6%
4189845 4964.1.1.0 ↗ alpha arrays › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I 0.55 43.0 2.98e-01 88.1% 24.1%
4019457 213.1.1.77 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1, Acetyltransf_7 0.55 45.0 3.24e-01 100.0% 41.0%
5071965 512.1.1.1 ↗ a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_1st 0.54 42.0 3.62e-01 100.0% 53.7%
5052927 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.54 40.0 3.24e-01 86.4% 59.3%
3784000 12.1.1.23 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › hGDE_central 0.53 43.0 3.48e-01 100.0% 45.0%
4941424 2004.1.1.76 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF87 0.53 44.0 2.75e-01 94.9% 95.1%
3399963 319.1.1.0 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.53 30.0 2.49e-01 100.0% 25.8%
4351239 4967.1.1.6 ↗ alpha bundles › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › Intron_maturas2 0.52 35.0 2.88e-01 72.9% 36.9%
4983074 4.23.1.2 ↗ beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like › PF26356 0.51 42.0 3.33e-01 93.2% 90.8%
3387077 327.13.1.2 ↗ a+b two layers › Alpha-lytic protease prodomain-like › Ring-building motif I in type III secretion system › Ring-building motif I in type III secretion system › YscJ_FliF_C 0.51 40.0 3.25e-01 93.2% 56.3%
4369739 1.1.10.1 ↗ beta barrels › cradle loop barrel › RIFT-related › Surface presentation of antigens (SPOA) › FliMN_C 0.51 30.0 2.73e-01 100.0% 43.0%
4872521 1.1.10.1 ↗ beta barrels › cradle loop barrel › RIFT-related › Surface presentation of antigens (SPOA) › FliMN_C 0.51 29.0 2.60e-01 98.3% 37.9%
4337983 601.7.1.40 ↗ alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain › Cas13a_C 0.51 42.0 2.45e-01 100.0% 43.3%
3593809 304.31.1.0 ↗ a+b two layers › Alpha-beta plaits › HMG-CoA reductase › NAD-binding domain of HMG-CoA reductase 0.50 33.0 2.83e-01 89.8% 36.4%