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BML_08042016_6_5m_scaffold_14_prodigal-single.1__X__X__00217

Bact-Vir

BML_08042016_6_5m_scaffold_14_prodigal-single.1__X__X__00217

Identity

Kingdom:
phage

Quality

92.7 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-65_91-106
PDB
Domain cluster: representative
D2 medium residues 66-90_107-227
PDB
CATH (44)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3u37A02 3.40.50.1110 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase 0.76 71.0 5.89e-01 100.0% 95.6%
6uqyB01 3.40.50.1110 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase 0.73 66.0 5.27e-01 96.6% 100.0%
2wabA02 3.40.50.1110 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase 0.70 65.0 5.65e-01 100.0% 96.3%
8gr2A01 3.40.50.1110 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase 0.69 63.0 5.67e-01 97.3% 100.0%
1ivnA00 3.40.50.1110 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase 0.69 64.0 6.00e-01 100.0% 97.2%
4h08A00 3.40.50.1110 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase 0.65 61.0 5.40e-01 100.0% 88.0%
4p02A02 3.90.550.10 Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.62 41.0 3.43e-01 99.3% 39.7%
5l16A01 3.30.1330.10 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › PurM-like, N-terminal domain 0.62 36.0 3.94e-01 78.1% 68.3%
4zv9A00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.61 50.0 4.27e-01 88.4% 99.6%
7wmzC01 3.20.20.220 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › 0.61 44.0 3.52e-01 73.3% 79.9%
2b99C00 3.40.50.960 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Lumazine/riboflavin synthase 0.59 51.0 5.06e-01 100.0% 87.5%
2nutA03 3.40.50.410 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › von Willebrand factor, type A domain 0.59 53.0 4.43e-01 99.3% 98.8%
1di0A00 3.40.50.960 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Lumazine/riboflavin synthase 0.58 50.0 5.07e-01 100.0% 91.9%
4wnyA00 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.57 39.0 4.11e-01 97.3% 76.5%
4gu5B01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.57 37.0 3.85e-01 96.6% 69.3%
4yleA02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.57 33.0 3.33e-01 80.8% 54.8%
1a2zA00 3.40.630.20 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Peptidase C15, pyroglutamyl peptidase I-like 0.57 52.0 4.53e-01 100.0% 93.6%
2xdqA02 3.40.50.1980 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain 0.57 45.0 4.65e-01 100.0% 89.0%
3i8oA01 3.40.50.1010 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 5'-nuclease 0.57 40.0 4.24e-01 95.9% 82.0%
1khtB00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.56 50.0 4.60e-01 97.3% 99.0%
1wy5A01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.56 38.0 3.31e-01 99.3% 45.6%
3u7vA01 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.56 46.0 3.44e-01 89.0% 91.7%
6ln3A00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.56 50.0 4.53e-01 99.3% 97.5%
2lndA00 3.40.50.11230 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.55 38.0 4.26e-01 99.3% 92.0%
3gycA00 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.55 48.0 3.58e-01 95.2% 98.2%
4zi5A00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.55 50.0 4.23e-01 100.0% 98.3%
3bxpB00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.54 49.0 4.04e-01 100.0% 86.6%
1zzmA00 3.20.20.140 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases 0.54 47.0 3.92e-01 96.6% 95.4%
4rckA00 3.40.50.410 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › von Willebrand factor, type A domain 0.54 35.0 3.16e-01 99.3% 46.6%
1p9oA00 3.40.50.10300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › CoaB-like 0.54 49.0 4.00e-01 100.0% 92.9%
6whcA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.53 48.0 4.22e-01 99.3% 80.8%
8ouzD01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.53 48.0 4.12e-01 97.3% 76.9%
4tv5A00 3.20.20.60 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Phosphoenolpyruvate-binding domains 0.52 41.0 3.44e-01 81.5% 90.6%
3zm8A02 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.52 44.0 3.53e-01 94.5% 88.0%
7upvA01 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.52 47.0 3.40e-01 99.3% 89.5%
4n5hX00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.52 46.0 3.68e-01 100.0% 77.1%
3cqjA00 3.20.20.150 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Divalent-metal-dependent TIM barrel enzymes 0.52 48.0 3.86e-01 100.0% 63.8%
2epkX01 3.30.160.230 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › N-acetyl-beta-d-glucosaminidase 0.52 27.0 3.51e-01 99.3% 90.0%
6hxqB01 3.40.50.261 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Succinyl-CoA synthetase domains 0.52 47.0 4.45e-01 100.0% 84.8%
2ywmA01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.52 30.0 3.32e-01 70.5% 70.4%
4h18A00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.51 45.0 3.51e-01 95.2% 90.0%
6yuqA01 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.51 45.0 3.89e-01 99.3% 87.2%
6gwuD00 3.40.1050.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-carbonic Anhydrase; Chain A › Carbonic anhydrase 0.51 46.0 4.09e-01 97.9% 77.7%
3kb2A00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.51 46.0 4.36e-01 99.3% 98.8%
ECOD (57)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3968788 2007.5.1.8 a/b three-layered sandwiches › Flavodoxin-like › SGNH hydrolase › SGNH hydrolase › Lipase_GDSL_2 0.72 68.0 5.75e-01 100.0% 83.1%
2323733 2007.5.1.1 a/b three-layered sandwiches › Flavodoxin-like › SGNH hydrolase › SGNH hydrolase › Lipase_GDSL 0.70 65.0 5.65e-01 100.0% 96.3%
4961413 2007.5.1.10 a/b three-layered sandwiches › Flavodoxin-like › SGNH hydrolase › SGNH hydrolase › Lipase_GDSL_3 0.69 65.0 5.60e-01 100.0% 81.8%
3869200 2007.5.1.1 a/b three-layered sandwiches › Flavodoxin-like › SGNH hydrolase › SGNH hydrolase › Lipase_GDSL 0.67 62.0 5.11e-01 100.0% 93.3%
5052045 7592.1.1.0 a/b three-layered sandwiches › CARF (CRISPR-associated Rossmann fold) domains › CARF (CRISPR-associated Rossmann fold) domains › CARF (CRISPR-associated Rossmann fold) domains 0.61 45.0 4.11e-01 97.3% 57.9%
None 0.61 50.0 4.27e-01 88.4% 99.6%
4957334 2005.1.1.3 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Usp 0.60 38.0 4.10e-01 96.6% 72.8%
4956039 2007.1.13.1 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Lumazine synthase › DMRL_synthase 0.60 50.0 5.13e-01 100.0% 92.1%
4079306 2007.1.13.1 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Lumazine synthase › DMRL_synthase 0.60 50.0 5.09e-01 100.0% 90.7%
4971716 2005.1.1.0 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains 0.60 41.0 4.16e-01 94.5% 70.6%
3680038 2005.1.1.43 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › CHX17_2nd 0.60 45.0 4.07e-01 96.6% 59.5%
None 0.59 53.0 4.06e-01 100.0% 78.5%
4923864 2006.1.6.7 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › Sec23_trunk 0.58 53.0 4.42e-01 99.3% 96.8%
4403046 2005.1.1.11 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › ATP_bind_3 0.58 37.0 3.30e-01 99.3% 44.3%
None 0.58 53.0 4.08e-01 99.3% 72.5%
5059591 2005.1.1.3 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Usp 0.58 38.0 3.96e-01 94.5% 70.0%
4962917 2005.1.1.3 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Usp 0.57 42.0 4.22e-01 96.6% 75.2%
5014519 2005.1.1.0 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains 0.57 40.0 4.00e-01 94.5% 68.7%
5018603 2006.1.6.15 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › DUF58 0.57 53.0 4.54e-01 100.0% 90.8%
4582525 2005.1.1.11 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › ATP_bind_3 0.57 38.0 3.28e-01 99.3% 41.7%
4990896 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.57 52.0 4.67e-01 100.0% 100.0%
3325528 2005.1.1.3 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Usp 0.56 41.0 3.95e-01 94.5% 64.7%
3463976 2005.1.1.0 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains 0.56 42.0 4.54e-01 94.5% 93.3%
4520759 2004.1.1.191 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_17 0.56 50.0 4.58e-01 97.9% 96.4%
3434728 2003.1.1.20 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › Epimerase 0.55 50.0 3.90e-01 100.0% 88.5%
4281154 2004.1.1.191 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_17 0.55 50.0 4.65e-01 100.0% 97.3%
3451856 2005.1.1.41 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › CHX17_C 0.55 42.0 3.87e-01 95.9% 61.6%
3288131 7579.1.1.13 a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › DLH 0.54 50.0 4.14e-01 99.3% 100.0%
3284711 7579.1.1.9 a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Esterase 0.54 49.0 3.82e-01 100.0% 84.0%
4563037 2003.1.6.6 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Tubulin nucleotide-binding domain-like › Misat_Tub_SegII+Tubulin_3 0.54 49.0 3.98e-01 99.3% 96.3%
3298297 2005.1.1.0 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains 0.54 40.0 3.86e-01 94.5% 67.1%
3836171 2003.1.5.31 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › GRAS 0.54 44.0 3.19e-01 91.8% 32.6%
3688078 2004.1.1.191 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_17 0.54 49.0 4.45e-01 100.0% 93.8%
3385478 7579.1.1.60 a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › DUF2920 0.53 48.0 3.53e-01 100.0% 83.7%
5028224 2002.1.1.0 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels 0.53 49.0 3.80e-01 100.0% 75.8%
3670890 2005.1.1.0 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains 0.53 39.0 4.04e-01 95.9% 81.5%
4962544 2005.1.1.3 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Usp 0.53 39.0 3.94e-01 94.5% 75.2%
3173408 2005.1.1.79 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › PF29926 0.53 39.0 3.48e-01 93.2% 55.0%
None 0.53 36.0 3.07e-01 99.3% 40.8%
3482174 2002.1.1.7 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels 0.53 46.0 3.17e-01 94.5% 87.5%
4418044 2004.1.1.70 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › dNK 0.52 47.0 4.12e-01 99.3% 95.9%
3802794 2005.1.1.3 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Usp 0.52 42.0 3.89e-01 94.5% 67.8%
3433431 2005.1.1.3 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Usp 0.52 40.0 3.91e-01 95.9% 72.1%
3603315 2004.1.1.67 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › CbiA 0.52 48.0 4.17e-01 100.0% 98.6%
4991573 2005.1.1.27 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › QueC 0.52 42.0 3.67e-01 87.7% 90.2%
4295862 2005.1.1.11 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › ATP_bind_3 0.52 39.0 3.27e-01 80.1% 45.5%
3589197 7579.1.1.36 a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_3 0.52 46.0 3.61e-01 100.0% 74.6%
4124153 2005.1.1.11 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › ATP_bind_3 0.51 38.0 3.05e-01 99.3% 38.0%
3588666 7579.1.1.89 a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › COesterase, BD-FAE 0.51 45.0 3.56e-01 100.0% 74.2%
4957553 2002.1.1.102 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › PHP 0.51 46.0 3.64e-01 97.3% 97.9%
151025 2003.1.6.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Tubulin nucleotide-binding domain-like 0.51 45.0 4.24e-01 96.6% 97.8%
4275162 2005.1.1.11 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › ATP_bind_3 0.51 37.0 3.08e-01 99.3% 44.1%
4998552 7512.1.1.30 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_4 0.51 45.0 4.05e-01 99.3% 98.1%
4624804 2003.1.5.62 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Eco57I 0.51 44.0 3.48e-01 93.8% 46.8%
3194315 2004.1.1.73 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MMR_HSR1 0.50 46.0 3.68e-01 100.0% 84.6%
4955605 2005.1.1.3 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Usp 0.50 38.0 3.78e-01 96.6% 74.8%
3676538 2005.1.1.0 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains 0.50 39.0 3.77e-01 96.6% 71.2%