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BML_08042016_6_5m_scaffold_18_prodigal-single.1__X__X__00022

Bact-Vir

BML_08042016_6_5m_scaffold_18_prodigal-single.1__X__X__00022

Identity

Kingdom:
phage

Quality

69.8 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 44-157
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF02151.26 best UVR 35.6 8.10e-09 31.6% 97.2%
ECOD (10)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5048188 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.68 47.0 4.22e-01 71.9% 77.5%
5000735 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.64 44.0 3.86e-01 71.9% 83.4%
5048466 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.63 44.0 4.11e-01 71.1% 85.0%
3684015 192.29.1.0 ↗ alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.60 40.0 4.24e-01 93.0% 77.0%
5069771 304.28.1.0 ↗ a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain 0.55 33.0 3.18e-01 78.9% 49.6%
3493458 101.1.2.236 ↗ alpha arrays › HTH › HTH › winged helix domain › POLR3C_WHD 0.54 37.0 3.45e-01 71.9% 72.7%
4561147 101.1.2.31 ↗ alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha 0.52 39.0 3.85e-01 89.5% 72.7%
4030238 219.1.1.9 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C12 0.52 45.0 3.41e-01 97.4% 94.0%
5082509 101.1.2.31 ↗ alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha 0.51 36.0 3.47e-01 71.9% 64.6%
5082704 375.1.1.179 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIE_alpha 0.50 46.0 3.75e-01 96.5% 89.2%