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BML_08042016_6_5m_scaffold_18_prodigal-single.1__X__X__00060
Bact-VirBML_08042016_6_5m_scaffold_18_prodigal-single.1__X__X__00060
Identity
- Kingdom:
- phage
Quality
91.3
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 37-117
Domain cluster:
representative
CATH (25)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4r03A00 | 2.40.128.720 | Mainly Beta › Beta Barrel › Lipocalin › | 0.72 | 50.0 | 4.53e-01 | 72.8% | 94.5% |
| 1w4tA01 | 3.30.2140.10 | Alpha Beta › 2-Layer Sandwich › Arylamine N-acetyltransferase fold › Arylamine N-acetyltransferase | 0.65 | 45.0 | 3.46e-01 | 71.6% | 74.2% |
| 6b9tF01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.64 | 43.0 | 3.75e-01 | 70.4% | 91.2% |
| 4n9jA02 | 3.30.1120.130 | Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › | 0.63 | 43.0 | 3.86e-01 | 70.4% | 65.4% |
| 2v43A01 | 2.50.20.10 | Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX | 0.62 | 52.0 | 4.01e-01 | 92.6% | 89.6% |
| 3v9fA02 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.62 | 45.0 | 3.06e-01 | 77.8% | 26.0% |
| 2xzmR01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.61 | 45.0 | 2.98e-01 | 77.8% | 34.2% |
| 3mswA00 | 2.40.128.720 | Mainly Beta › Beta Barrel › Lipocalin › | 0.60 | 50.0 | 4.18e-01 | 91.4% | 83.5% |
| 4lqbA00 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.57 | 29.0 | 2.52e-01 | 74.1% | 29.2% |
| 2le1A00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.57 | 45.0 | 3.80e-01 | 90.1% | 80.1% |
| 1xffA00 | 3.60.20.10 | Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain | 0.57 | 44.0 | 3.11e-01 | 81.5% | 89.5% |
| 1iwmA00 | 2.50.20.10 | Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX | 0.56 | 49.0 | 3.88e-01 | 100.0% | 93.2% |
| 3wknF00 | 6.20.50.120 | Special › Other non-globular › N-terminal domain of TfIIb › | 0.56 | 29.0 | 3.74e-01 | 93.8% | 89.1% |
| 1ylxA00 | 3.30.70.1480 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › GK1464-like | 0.55 | 42.0 | 4.01e-01 | 85.2% | 80.8% |
| 2ostD00 | 3.40.1350.10 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.55 | 41.0 | 3.62e-01 | 84.0% | 85.0% |
| 4a0tA01 | 6.20.80.10 | Special › Other non-globular › Glycosyl hydrolase fold › | 0.53 | 34.0 | 3.82e-01 | 90.1% | 86.9% |
| 3ebyA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.53 | 40.0 | 3.34e-01 | 82.7% | 95.4% |
| 1vq8E01 | 3.90.930.12 | Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › Ribosomal protein L6 | 0.53 | 33.0 | 3.38e-01 | 93.8% | 64.6% |
| 3c6kA01 | 3.30.160.110 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Sirohaem synthase, central domain | 0.52 | 42.0 | 4.02e-01 | 96.3% | 74.5% |
| 3rd6A00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.51 | 44.0 | 3.75e-01 | 100.0% | 81.2% |
| 3d2mA02 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.50 | 38.0 | 3.19e-01 | 82.7% | 67.3% |
| 3lxqA01 | 3.30.1120.80 | Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › | 0.50 | 37.0 | 3.51e-01 | 98.8% | 63.6% |
| 1y9kA01 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.50 | 38.0 | 3.44e-01 | 81.5% | 76.1% |
| 3dr6B00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.50 | 38.0 | 3.07e-01 | 82.7% | 67.5% |
| 2fiwA00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.50 | 39.0 | 3.22e-01 | 87.7% | 85.0% |
ECOD (20)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5023144 | 243.6.1.9 ↗ | a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › TGT_C2 | 0.63 | 43.0 | 4.78e-01 | 70.4% | 100.0% |
| 4648495 | 5.1.3.48 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Gmad1 | 0.63 | 43.0 | 3.04e-01 | 71.6% | 51.9% |
| 4027011 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.63 | 53.0 | 3.62e-01 | 95.1% | 29.8% |
| 3229045 | 145.1.1.1 ↗ | alpha arrays › F-box domain › F-box domain › F-box domain › F-box | 0.63 | 47.0 | 4.50e-01 | 80.2% | 86.3% |
| 4144845 | 220.1.1.289 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › HdcB | 0.61 | 45.0 | 4.08e-01 | 77.8% | 72.7% |
| 3241930 | 881.1.1.20 ↗ | a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › DUF3557 | 0.60 | 41.0 | 3.58e-01 | 70.4% | 75.0% |
| 4947903 | 210.1.3.5 ↗ | a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_7 | 0.59 | 45.0 | 3.17e-01 | 80.2% | 87.8% |
| 3163979 | 71.1.1.4 ↗ | beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › MucB_RseB | 0.58 | 47.0 | 3.71e-01 | 92.6% | 86.8% |
| 5064901 | 213.1.1.1 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 | 0.55 | 42.0 | 3.45e-01 | 92.6% | 44.7% |
| 3561513 | 5.1.4.8 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CNH | 0.55 | 37.0 | 2.47e-01 | 71.6% | 61.9% |
| 4962687 | 4972.1.1.1 ↗ | beta barrels › barrel domain in CV3147-like proteins › barrel domain in CV3147-like proteins › barrel domain in CV3147-like proteins › DUF917_C | 0.54 | 44.0 | 3.83e-01 | 88.9% | 62.4% |
| 3867654 | 6129.1.1.1 ↗ | beta barrels › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › VWD | 0.54 | 39.0 | 3.10e-01 | 77.8% | 37.1% |
| 4980820 | 844.1.1.2 ↗ | beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › LOR | 0.53 | 45.0 | 3.51e-01 | 92.6% | 91.7% |
| 3186839 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.53 | 39.0 | 2.55e-01 | 79.0% | 33.8% |
| 3627280 | 331.23.1.0 ↗ | a+b two layers › TBP-like › Integrator IntS9/IntS11 C-terminal domain › Integrator IntS9/IntS11 C-terminal domain | 0.53 | 41.0 | 4.24e-01 | 88.9% | 88.0% |
| 4990161 | 2004.1.1.123 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_RecD | 0.52 | 43.0 | 3.14e-01 | 92.6% | 64.6% |
| 5060820 | 2484.1.1.18 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1 | 0.52 | 37.0 | 2.38e-01 | 75.3% | 70.7% |
| None | — | 0.52 | 40.0 | 2.90e-01 | 84.0% | 97.9% | |
| 4949049 | 3488.1.1.5 ↗ | a+b three layers › Putative sensor histidine kinase domain › Putative sensor histidine kinase domain › Putative sensor histidine kinase domain › Cache_3-Cache_2 | 0.51 | 34.0 | 3.10e-01 | 98.8% | 47.8% |
| 4128920 | 304.114.1.0 ↗ | a+b two layers › Alpha-beta plaits › Family B DNA polymerase insertion domain › Family B DNA polymerase insertion domain | 0.50 | 40.0 | 4.03e-01 | 100.0% | 88.2% |