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BML_08042016_6_5m_scaffold_18_prodigal-single.1__X__X__00071
Bact-VirBML_08042016_6_5m_scaffold_18_prodigal-single.1__X__X__00071
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 4-65
Domain cluster:
rep: MK448235.1__QBQ71520.1__X__00048__D4-56
CATH (27)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2btwA00 | 3.90.70.30 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Phytochelatin synthase, N-terminal domain | 0.67 | 58.0 | 4.05e-01 | 100.0% | 45.2% |
| 4rdlA02 | 2.40.30.120 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Positive stranded ssRNA viruses | 0.63 | 53.0 | 4.55e-01 | 100.0% | 98.1% |
| 2mm0A00 | 2.10.70.110 | Mainly Beta › Ribbon › Complement Module; domain 1 › | 0.61 | 43.0 | 4.30e-01 | 75.8% | 100.0% |
| 5c94A00 | 2.40.10.250 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Replicase NSP9 | 0.60 | 43.0 | 3.64e-01 | 79.0% | 44.0% |
| 2p0hA00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.59 | 46.0 | 3.82e-01 | 87.1% | 85.6% |
| 1mvpA00 | 2.40.70.10 | Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases | 0.57 | 45.0 | 3.87e-01 | 91.9% | 67.0% |
| 7oc3A01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.57 | 48.0 | 4.35e-01 | 100.0% | 80.4% |
| 3tfmA02 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.57 | 45.0 | 3.78e-01 | 87.1% | 78.0% |
| 1ep5A02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.56 | 39.0 | 3.57e-01 | 100.0% | 52.3% |
| 1u5dA00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.56 | 43.0 | 3.68e-01 | 85.5% | 83.3% |
| 7x4qA01 | 3.30.460.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 | 0.56 | 40.0 | 3.12e-01 | 77.4% | 63.6% |
| 1v0fB03 | 2.40.30.20 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › | 0.56 | 48.0 | 4.39e-01 | 100.0% | 98.8% |
| 2vldB01 | 2.70.180.20 | Mainly Beta › Distorted Sandwich › Protein Yojf; Chain: A; › | 0.56 | 45.0 | 3.87e-01 | 100.0% | 83.9% |
| 1dj7B00 | 2.30.30.50 | Mainly Beta › Roll › SH3 type barrels. › | 0.56 | 41.0 | 4.04e-01 | 87.1% | 100.0% |
| 3cp7B02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.54 | 45.0 | 3.93e-01 | 100.0% | 60.0% |
| 1wxrA03 | 3.30.160.280 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.54 | 39.0 | 3.67e-01 | 77.4% | 68.4% |
| 1kz7C02 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.54 | 41.0 | 3.31e-01 | 87.1% | 70.1% |
| 2gfaB01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.53 | 43.0 | 4.39e-01 | 100.0% | 90.3% |
| 3pfmA00 | 3.20.20.450 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › EAL domain | 0.53 | 38.0 | 2.68e-01 | 79.0% | 95.5% |
| 7x4pA01 | 3.30.460.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 | 0.52 | 37.0 | 2.93e-01 | 79.0% | 68.8% |
| 8bs9A01 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.52 | 38.0 | 2.54e-01 | 82.3% | 25.7% |
| 4kc7A02 | 2.40.128.10 | Mainly Beta › Beta Barrel › Lipocalin › | 0.52 | 39.0 | 3.53e-01 | 88.7% | 98.0% |
| 1mkeA00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.52 | 40.0 | 3.17e-01 | 87.1% | 60.4% |
| 1c8zA00 | 3.20.90.10 | Alpha Beta › Alpha-Beta Barrel › Tubby Protein; Chain A › Tubby Protein; Chain A | 0.51 | 38.0 | 2.61e-01 | 85.5% | 89.4% |
| 3zfnA02 | 2.30.140.40 | Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Pestivirus Npro endopeptidase C53, interaction domain | 0.51 | 33.0 | 3.41e-01 | 75.8% | 71.9% |
| 2x8fA02 | 2.40.128.10 | Mainly Beta › Beta Barrel › Lipocalin › | 0.51 | 38.0 | 3.44e-01 | 87.1% | 97.9% |
| 2fhdA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.51 | 36.0 | 3.61e-01 | 79.0% | 90.3% |
ECOD (25)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2713759 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.67 | 54.0 | 4.92e-01 | 91.9% | 73.6% |
| 3805340 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.65 | 56.0 | 4.48e-01 | 100.0% | 96.2% |
| 5013280 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.65 | 53.0 | 4.76e-01 | 98.4% | 89.5% |
| 3957374 | 1.1.5.8 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx | 0.65 | 54.0 | 5.25e-01 | 95.2% | 92.9% |
| 1851176 | 5092.1.1.0 ↗ | beta sandwiches › Domain in virus attachment proteins › Domain in virus attachment proteins › Domain in virus attachment proteins | 0.63 | 54.0 | 4.24e-01 | 98.4% | 75.7% |
| 3315510 | 4.1.1.246 ↗ | beta barrels › SH3 › SH3 › SH3 › Tudor_Coilin | 0.61 | 51.0 | 4.36e-01 | 100.0% | 85.5% |
| 4014768 | 1.1.7.24 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_8 | 0.60 | 50.0 | 4.32e-01 | 96.8% | 97.1% |
| 3459099 | 4.1.1.158 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF3444 | 0.60 | 50.0 | 4.23e-01 | 93.5% | 74.3% |
| 3172086 | 2.1.1.15 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon | 0.60 | 42.0 | 3.56e-01 | 77.4% | 77.4% |
| 4989873 | 1.1.7.28 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › HAS-barrel | 0.60 | 50.0 | 4.16e-01 | 100.0% | 98.3% |
| 4676513 | 219.1.1.76 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › DUF553 | 0.59 | 45.0 | 3.31e-01 | 83.9% | 37.2% |
| 3488117 | 10.1.1.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases | 0.58 | 49.0 | 3.66e-01 | 100.0% | 81.2% |
| 4986669 | 2007.1.1.10 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Class I glutamine amidotransferase-like › GATase_3 | 0.58 | 39.0 | 3.05e-01 | 71.0% | 55.9% |
| 3270570 | 220.1.1.1 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH | 0.57 | 44.0 | 3.69e-01 | 85.5% | 79.1% |
| 3802153 | 868.1.1.11 ↗ | a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › DUF7903 | 0.57 | 42.0 | 2.91e-01 | 82.3% | 36.3% |
| 4558605 | 220.5.1.1 ↗ | beta barrels › PH domain-like › NucS N-terminal domain › NucS N-terminal domain › NucS_N | 0.56 | 42.0 | 3.52e-01 | 83.9% | 91.7% |
| 3269109 | 219.1.1.13 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Transglut_core | 0.56 | 43.0 | 3.16e-01 | 88.7% | 81.0% |
| 3510681 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.55 | 42.0 | 4.02e-01 | 85.5% | 98.7% |
| 3872568 | 220.1.1.4 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › Ran_BP1 | 0.55 | 40.0 | 3.11e-01 | 83.9% | 57.6% |
| 4931824 | 3509.1.1.1 ↗ | a+b complex topology › RapA C-terminal domain › RapA C-terminal domain › RapA C-terminal domain › RapA_C | 0.53 | 44.0 | 3.19e-01 | 100.0% | 56.1% |
| 3201755 | 219.1.1.93 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › DUF6540 | 0.53 | 43.0 | 3.26e-01 | 95.2% | 43.5% |
| 4929758 | 10.1.2.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) | 0.52 | 43.0 | 3.35e-01 | 100.0% | 98.1% |
| 3977635 | 2002.5.1.1 ↗ | a/b barrels › TIM beta/alpha-barrel › EAL domain › EAL domain › EAL | 0.51 | 38.0 | 2.61e-01 | 80.6% | 93.5% |
| 4945627 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.51 | 41.0 | 3.17e-01 | 93.5% | 63.7% |
| 3362301 | 219.1.1.3 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH | 0.51 | 38.0 | 2.46e-01 | 83.9% | 33.1% |