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BML_08042016_6_5m_scaffold_18_prodigal-single.1__X__X__00092

Bact-Vir

BML_08042016_6_5m_scaffold_18_prodigal-single.1__X__X__00092

Identity

Kingdom:
phage

Quality

87.7 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 33-94
PDB
Domain cluster: representative
CATH (61)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1igqB00 2.30.30.150 Mainly Beta › Roll › SH3 type barrels. › KorB, C-terminal domain 0.81 55.0 5.75e-01 100.0% 77.2%
5i4eA01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.79 52.0 5.86e-01 95.2% 91.3%
2ckkA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.78 59.0 6.27e-01 100.0% 94.3%
1mhnA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.77 56.0 5.76e-01 100.0% 81.4%
4m4zA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.77 55.0 6.06e-01 96.8% 100.0%
2e6zA00 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.75 53.0 5.47e-01 100.0% 79.7%
3ntkA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.73 51.0 4.68e-01 100.0% 56.2%
6c6sD02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.73 54.0 5.49e-01 100.0% 81.7%
1yn8A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.72 60.0 6.13e-01 100.0% 94.9%
2cudA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.72 59.0 5.46e-01 100.0% 70.9%
4krtB03 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.72 65.0 6.33e-01 100.0% 98.5%
4rmoA00 3.10.129.130 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › 0.71 62.0 4.67e-01 100.0% 64.3%
1udlA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.71 57.0 4.85e-01 100.0% 55.1%
1lckA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.71 57.0 5.86e-01 100.0% 93.2%
2v1qA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.70 59.0 6.00e-01 100.0% 95.0%
6bogA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.70 49.0 5.22e-01 100.0% 88.5%
2eifA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.70 47.0 4.89e-01 71.0% 98.3%
2egcA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.70 58.0 5.46e-01 100.0% 76.0%
1zuyA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.69 58.0 5.96e-01 100.0% 98.3%
2fpeA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.69 56.0 5.65e-01 100.0% 90.3%
1uebA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.68 47.0 4.70e-01 71.0% 96.8%
3e19B01 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.68 58.0 5.81e-01 100.0% 95.3%
6gbuD00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.67 57.0 5.73e-01 100.0% 92.2%
4h75A00 2.80.10.70 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › Spindlin/Ssty 0.67 57.0 3.95e-01 100.0% 29.1%
1v1cA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.66 59.0 5.77e-01 100.0% 91.2%
2e5kA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.64 55.0 5.49e-01 100.0% 93.8%
1bkbA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.64 46.0 4.55e-01 75.8% 96.9%
1tv8B00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.63 46.0 2.92e-01 79.0% 27.3%
3dghA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.62 53.0 4.34e-01 100.0% 96.7%
3tdgA01 3.10.450.520 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.62 48.0 4.76e-01 93.5% 80.3%
5f3yA05 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.62 54.0 5.05e-01 100.0% 79.2%
3cpfA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.62 46.0 4.56e-01 100.0% 76.9%
1h10A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.61 48.0 4.02e-01 90.3% 84.6%
3c4bA02 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.60 42.0 4.11e-01 72.6% 77.6%
3cgbA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.60 50.0 3.70e-01 95.2% 50.6%
1fl2A02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.60 51.0 4.16e-01 100.0% 97.6%
3doaA01 2.30.310.10 Mainly Beta › Roll › ibrinogen binding protein from staphylococcus aureus fold › ibrinogen binding protein from staphylococcus aureus domain 0.60 44.0 3.46e-01 83.9% 60.8%
7e52A01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.60 49.0 4.05e-01 100.0% 96.9%
3lzwA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.59 50.0 4.17e-01 100.0% 98.3%
2wacA01 2.40.50.90 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.59 46.0 3.71e-01 87.1% 62.7%
2y9fA00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.58 50.0 3.89e-01 100.0% 92.6%
3k30A03 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.58 50.0 3.96e-01 100.0% 90.2%
3vwcA00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.57 47.0 3.67e-01 95.2% 99.3%
2it1A03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.57 38.0 3.89e-01 93.5% 72.1%
1jlxA01 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.57 48.0 3.67e-01 100.0% 93.1%
2ownA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.56 42.0 2.88e-01 83.9% 91.0%
1khiA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.56 47.0 4.49e-01 100.0% 78.7%
6u5uG07 3.30.1120.100 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.55 43.0 3.49e-01 88.7% 72.0%
1plqA00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.54 42.0 2.90e-01 90.3% 44.2%
1ybyA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.54 44.0 4.44e-01 90.3% 95.3%
2oc3A00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.54 37.0 2.54e-01 75.8% 48.0%
1y5oA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 41.0 3.52e-01 90.3% 91.3%
1vyfA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.53 45.0 3.62e-01 100.0% 89.6%
1sxjH01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.53 41.0 3.42e-01 90.3% 91.9%
6i8xA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.53 44.0 3.48e-01 100.0% 87.2%
2vnuD01 2.40.50.690 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.53 41.0 3.54e-01 87.1% 92.2%
2kz4A00 2.40.10.270 Mainly Beta › Beta Barrel › Thrombin, subunit H › Bacteriophage SPP1 head-tail adaptor protein 0.53 43.0 3.64e-01 93.5% 92.9%
1u7bA00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.52 43.0 2.98e-01 100.0% 94.0%
1bebA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.52 43.0 3.36e-01 100.0% 66.7%
1iz6A01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.51 40.0 3.92e-01 100.0% 81.2%
4hc5D00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.51 39.0 3.17e-01 85.5% 75.6%
ECOD (67)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3264806 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.84 56.0 6.20e-01 98.4% 86.0%
4027263 4.1.1.104 beta barrels › SH3 › SH3 › SH3 › KN17_SH3 0.83 63.0 5.01e-01 100.0% 41.7%
3393360 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.83 58.0 4.63e-01 100.0% 39.1%
3480822 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.82 60.0 6.55e-01 100.0% 94.0%
3230520 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.81 58.0 5.13e-01 100.0% 52.2%
3665882 4.1.1.42 beta barrels › SH3 › SH3 › SH3 › Agenet 0.81 60.0 4.62e-01 100.0% 36.3%
3333322 4.1.1.42 beta barrels › SH3 › SH3 › SH3 › Agenet 0.81 56.0 4.28e-01 100.0% 33.3%
3820066 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.80 63.0 6.41e-01 100.0% 86.7%
3819340 4.1.1.322 beta barrels › SH3 › SH3 › SH3 › GPKOW_C 0.80 63.0 4.99e-01 100.0% 43.3%
3348456 4.1.1.322 beta barrels › SH3 › SH3 › SH3 › GPKOW_C 0.79 61.0 6.27e-01 100.0% 86.7%
3627914 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.79 59.0 4.97e-01 100.0% 49.0%
3486271 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.78 56.0 4.93e-01 100.0% 52.2%
3214474 4.1.1.390 beta barrels › SH3 › SH3 › SH3 › PF29855 0.77 63.0 5.31e-01 100.0% 55.0%
3706998 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.75 51.0 5.21e-01 100.0% 73.3%
3894798 4.1.1.243 beta barrels › SH3 › SH3 › SH3 › SH3_Myosin-XVIIIa 0.74 52.0 5.89e-01 93.5% 100.0%
3769507 4.1.1.31 beta barrels › SH3 › SH3 › SH3 › Spin-Ssty 0.74 55.0 5.36e-01 100.0% 71.4%
3747392 4.1.1.31 beta barrels › SH3 › SH3 › SH3 › Spin-Ssty 0.73 52.0 5.20e-01 95.2% 72.3%
3842441 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.73 60.0 6.09e-01 98.4% 91.7%
4082863 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.73 60.0 5.77e-01 100.0% 80.0%
3498357 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.71 59.0 5.65e-01 100.0% 80.0%
4003123 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.71 59.0 5.82e-01 100.0% 86.2%
3939132 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.71 60.0 5.09e-01 100.0% 58.0%
4963580 4.1.1.40 beta barrels › SH3 › SH3 › SH3 › FeoA 0.71 60.0 5.65e-01 100.0% 80.0%
4939495 4.1.1.40 beta barrels › SH3 › SH3 › SH3 › FeoA 0.71 61.0 5.83e-01 100.0% 86.3%
3773038 4.1.1.31 beta barrels › SH3 › SH3 › SH3 › Spin-Ssty 0.70 48.0 5.39e-01 74.2% 97.8%
2426920 4.1.1.31 beta barrels › SH3 › SH3 › SH3 › Spin-Ssty 0.70 54.0 5.62e-01 100.0% 91.1%
4352991 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.70 48.0 4.90e-01 71.0% 96.7%
3486189 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.70 59.0 6.01e-01 100.0% 96.7%
3925642 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.70 58.0 5.01e-01 100.0% 58.0%
4878827 4.1.1.92 beta barrels › SH3 › SH3 › SH3 › SH3_9 0.70 58.0 5.85e-01 100.0% 91.9%
3845351 4.1.1.31 beta barrels › SH3 › SH3 › SH3 › Spin-Ssty 0.69 59.0 5.17e-01 100.0% 64.4%
3342793 4.1.1.42 beta barrels › SH3 › SH3 › SH3 › Agenet 0.69 58.0 4.06e-01 91.9% 38.9%
3749245 4.1.1.31 beta barrels › SH3 › SH3 › SH3 › Spin-Ssty 0.69 59.0 4.57e-01 100.0% 44.6%
3768832 4.1.1.31 beta barrels › SH3 › SH3 › SH3 › Spin-Ssty 0.69 50.0 5.25e-01 77.4% 92.7%
4167626 2.1.1.10 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › EFP 0.69 47.0 4.63e-01 71.0% 93.8%
3913637 4.1.1.31 beta barrels › SH3 › SH3 › SH3 › Spin-Ssty 0.68 58.0 5.09e-01 100.0% 64.4%
3416133 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.68 55.0 5.20e-01 100.0% 74.7%
3774692 4.1.1.31 beta barrels › SH3 › SH3 › SH3 › Spin-Ssty 0.68 57.0 5.24e-01 100.0% 72.5%
3917464 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.67 57.0 5.65e-01 100.0% 89.2%
3570230 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.67 58.0 5.18e-01 100.0% 67.8%
3895155 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.66 56.0 5.14e-01 100.0% 72.5%
4950506 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.65 50.0 4.21e-01 83.9% 64.8%
3392762 377.1.1.83 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › PF26040 0.65 37.0 4.52e-01 85.5% 100.0%
4987320 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.64 44.0 4.47e-01 71.0% 98.3%
2816341 375.1.1.189 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › EcdD_BsdD_detox 0.64 39.0 3.96e-01 83.9% 60.3%
4962087 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.64 45.0 4.64e-01 90.3% 76.7%
4945673 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.63 45.0 4.52e-01 75.8% 100.0%
3645101 375.1.1.80 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-Dof 0.63 45.0 4.84e-01 90.3% 94.0%
None 0.63 38.0 2.45e-01 87.1% 12.5%
4062751 2.1.1.13 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › eIF-5a 0.62 45.0 4.59e-01 75.8% 80.0%
3538030 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.62 53.0 5.15e-01 100.0% 85.7%
3908665 4.1.1.227 beta barrels › SH3 › SH3 › SH3 › PWWP_KDM3B 0.61 54.0 4.69e-01 98.4% 64.2%
3521181 4.1.1.229 beta barrels › SH3 › SH3 › SH3 0.61 55.0 3.95e-01 100.0% 35.4%
3351110 227.1.1.1 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.61 49.0 4.00e-01 90.3% 96.7%
4582456 2.1.1.10 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › EFP 0.59 45.0 4.37e-01 82.3% 92.9%
1822927 227.1.1.2 a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.59 47.0 3.56e-01 90.3% 70.6%
3948516 2.1.1.10 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › EFP 0.58 41.0 4.12e-01 75.8% 100.0%
4212328 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.55 45.0 4.19e-01 96.8% 80.0%
4847379 5.1.5.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.54 45.0 2.92e-01 95.2% 39.3%
4991458 304.37.1.1 a+b two layers › Alpha-beta plaits › Sulfite reductase, domains 1 and 3 › Sulfite reductase, domains 1 and 3 › NIR_SIR_ferr 0.54 38.0 3.13e-01 77.4% 72.3%
3477236 5.1.11.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 9-bladed 0.54 43.0 2.39e-01 90.3% 43.5%
3620138 3246.1.1.4 few secondary structure elements › Disulfide-rich domain in A Disintegrin And Metalloprotease (ADAM) domain-containing proteins › Disulfide-rich domain in A Disintegrin And Metalloprotease (ADAM) domain-containing proteins › Disulfide-rich domain in A Disintegrin And Metalloprotease (ADAM) domain-containing proteins › ADAMTS_CR_3 0.53 41.0 3.54e-01 93.5% 52.0%
4425810 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.53 36.0 3.68e-01 87.1% 73.3%
3268906 5.1.10.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 12-bladed 0.52 41.0 3.74e-01 90.3% 75.3%
3510695 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.52 38.0 3.58e-01 80.6% 76.2%
5030227 4294.1.1.0 few secondary structure elements › Trm112p-like › Trm112p-like › Trm112p-like 0.52 39.0 4.08e-01 91.9% 90.9%
3592754 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.51 37.0 3.08e-01 79.0% 80.7%