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BML_08042016_6_5m_scaffold_18_prodigal-single.1__X__X__00104

Bact-Vir

BML_08042016_6_5m_scaffold_18_prodigal-single.1__X__X__00104

Identity

Kingdom:
phage

Quality

78.9 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-70
PDB
Domain cluster: representative
CATH (44)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1tj7A01 1.10.275.10 Mainly Alpha › Orthogonal Bundle › Fumarase C; Chain B, domain 1 › Fumarase/aspartase (N-terminal domain) 0.71 62.0 5.35e-01 100.0% 74.3%
1lp1A00 1.20.5.420 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C 0.69 49.0 5.26e-01 95.4% 87.3%
3fajA00 1.20.120.950 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Uncharacterised protein DUF5062 0.67 54.0 4.75e-01 90.8% 71.3%
2w9zA01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.67 57.0 4.57e-01 96.9% 60.2%
6fakA02 1.10.246.10 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › 0.65 53.0 4.96e-01 89.2% 91.4%
2kruA01 1.10.8.550 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Proto-chlorophyllide reductase 57 kD subunit B 0.65 48.0 5.27e-01 81.5% 98.1%
2i53A02 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.65 55.0 4.69e-01 98.5% 71.2%
1jwjA01 3.90.340.10 Alpha Beta › Alpha-Beta Complex › Nitric Oxide Synthase; Chain A, domain 1 › Nitric Oxide Synthase; Chain A, domain 1 0.64 52.0 3.85e-01 100.0% 34.3%
2hpsA00 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.64 57.0 4.15e-01 100.0% 66.3%
4uobA02 1.10.340.30 Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Hypothetical protein; domain 2 0.64 54.0 4.40e-01 95.4% 81.7%
7tvyA01 1.10.238.20 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › Pheromone/general odorant binding protein domain 0.64 56.0 4.68e-01 100.0% 69.8%
4kjmA02 1.20.5.420 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C 0.64 47.0 5.03e-01 95.4% 92.7%
6rxaA01 1.10.40.30 Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase Protein R1; domain 1 › Fumarase/aspartase (C-terminal domain) 0.63 51.0 4.74e-01 93.8% 72.4%
3h0dB02 1.10.1200.150 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › Transcriptional repressor of class III stress genes, C-terminal domain 0.63 53.0 4.93e-01 93.8% 74.1%
6zhiB02 1.20.1270.10 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.63 53.0 4.97e-01 95.4% 84.3%
2cr7A01 1.20.1160.11 Mainly Alpha › Up-down Bundle › Paired amphipathic helix 2 (pah2 repeat) › Paired amphipathic helix 0.63 51.0 5.23e-01 96.9% 95.2%
1q1vA00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.63 42.0 4.17e-01 70.8% 70.0%
3kv0A01 1.10.3520.10 Mainly Alpha › Orthogonal Bundle › Glycolipid transfer protein, GLTP › Glycolipid transfer protein 0.63 54.0 4.07e-01 100.0% 91.2%
1id3G00 1.10.20.10 Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Histone, subunit A 0.62 44.0 3.73e-01 73.8% 45.4%
1c9bA01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.62 52.0 4.64e-01 96.9% 76.3%
2a3vB01 1.10.150.130 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain 0.61 50.0 4.56e-01 95.4% 89.4%
1iuqA01 1.10.1200.50 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › Glycerol-3-phosphate acyltransferase, alpha helical bundle, N-terminal 0.61 52.0 5.00e-01 93.8% 88.2%
1zp2A01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.61 50.0 4.32e-01 96.9% 60.0%
2ki4B00 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.61 46.0 4.15e-01 84.6% 58.3%
2l09A01 1.10.8.550 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Proto-chlorophyllide reductase 57 kD subunit B 0.61 45.0 4.87e-01 81.5% 98.1%
5e37A02 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.61 49.0 4.62e-01 100.0% 72.1%
2g8lB01 1.10.8.380 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Uncharacterised protein PF01937, DUF89, domain 1 0.61 50.0 5.01e-01 92.3% 92.5%
6azyA01 1.10.1780.10 Mainly Alpha › Orthogonal Bundle › Double Clp-N motif › Clp, N-terminal domain 0.60 46.0 3.80e-01 86.2% 86.3%
1y1aA02 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.60 48.0 4.46e-01 92.3% 78.2%
2mqaA00 1.10.274.60 Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › Spidroin, repetitive domain 0.60 50.0 4.21e-01 100.0% 77.6%
2r18A02 1.10.8.880 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Birnavirus VP3 protein, domain 2 0.60 46.0 4.77e-01 84.6% 93.2%
4rocA01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.60 53.0 4.55e-01 100.0% 71.8%
1v1gA00 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.60 51.0 3.77e-01 100.0% 78.7%
3v9rA00 1.10.20.10 Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Histone, subunit A 0.58 44.0 4.02e-01 81.5% 86.4%
4dwnA00 1.10.533.10 Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas 0.58 47.0 4.23e-01 100.0% 62.9%
4csrB00 1.10.20.10 Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Histone, subunit A 0.57 42.0 3.92e-01 78.5% 84.1%
3whkA02 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.57 43.0 4.16e-01 80.0% 75.0%
1ulyA02 1.10.20.10 Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Histone, subunit A 0.57 41.0 3.60e-01 76.9% 86.1%
1hqvA00 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.56 47.0 3.46e-01 93.8% 60.7%
7egfc01 1.10.20.10 Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Histone, subunit A 0.56 42.0 3.88e-01 81.5% 87.2%
2daxA01 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.56 43.0 3.42e-01 86.2% 87.9%
2y1eA03 1.10.1740.10 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif 0.55 42.0 3.84e-01 83.1% 64.4%
3iieB03 1.10.1740.10 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif 0.55 40.0 3.75e-01 81.5% 64.7%
2pbfA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.51 40.0 2.91e-01 90.8% 95.0%
ECOD (62)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3219373 108.1.1.0 alpha arrays › EF-hand › EF-hand-related › EF-hand 0.80 63.0 5.90e-01 84.6% 75.0%
3503611 108.1.1.0 alpha arrays › EF-hand › EF-hand-related › EF-hand 0.75 59.0 5.16e-01 84.6% 57.9%
4929245 4953.1.1.0 beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like 0.73 64.0 6.32e-01 98.5% 100.0%
3810077 310.2.1.0 a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF 0.70 61.0 4.69e-01 100.0% 63.2%
3455582 4952.1.1.0 alpha arrays › L-aspartase N-terminal domain-like › L-aspartase N-terminal domain-like › L-aspartase N-terminal domain-like 0.70 61.0 5.19e-01 100.0% 66.4%
3813741 603.1.1.0 alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.70 61.0 4.79e-01 100.0% 69.3%
3666013 181.1.1.0 alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins 0.69 52.0 5.17e-01 83.1% 87.1%
3924261 108.1.1.0 alpha arrays › EF-hand › EF-hand-related › EF-hand 0.69 52.0 5.01e-01 83.1% 72.0%
4663350 148.1.3.3 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › PCP_red 0.67 47.0 4.93e-01 75.4% 88.3%
4637515 148.1.1.13 alpha arrays › Histone-like › Histone-related › Histone › PCP_red 0.66 45.0 4.97e-01 70.8% 96.0%
5049406 148.1.3.20 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_2 0.66 55.0 4.93e-01 96.9% 91.6%
4652008 181.2.1.1 alpha bundles › Domain of the SRP/SRP receptor G proteins-like › CtsR dimerization domain › CtsR dimerization domain › CtsR_C 0.65 55.0 5.17e-01 93.8% 76.9%
3233936 627.1.1.2 alpha complex topology › VPS9 domain › VPS9 domain › VPS9 domain › DUF5601 0.65 54.0 4.81e-01 93.8% 86.3%
3971243 148.1.3.20 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_2 0.65 48.0 4.81e-01 80.0% 87.7%
3506096 148.1.1.0 alpha arrays › Histone-like › Histone-related › Histone 0.64 47.0 4.34e-01 78.5% 77.4%
4931700 4009.1.1.0 alpha bundles › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins 0.64 54.0 5.31e-01 95.4% 97.1%
5034808 4009.1.1.1 alpha bundles › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › ARMT1-like_dom 0.63 54.0 5.29e-01 95.4% 97.1%
5058453 148.1.3.50 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › Cdc6_lid 0.63 46.0 4.24e-01 78.5% 64.7%
3911057 108.1.1.97 alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_1, EF-hand_7 0.63 53.0 4.79e-01 100.0% 77.9%
3322037 148.1.3.213 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › MCM_bind 0.63 46.0 4.55e-01 80.0% 87.1%
4960785 4009.1.1.0 alpha bundles › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins 0.62 53.0 5.23e-01 95.4% 91.4%
3598633 148.1.1.0 alpha arrays › Histone-like › Histone-related › Histone 0.62 45.0 4.11e-01 76.9% 84.7%
3929047 148.1.1.4 alpha arrays › Histone-like › Histone-related › Histone › CBFD_NFYB_HMF 0.62 47.0 4.27e-01 83.1% 86.7%
4976900 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.61 49.0 4.44e-01 87.7% 63.3%
4974459 4009.1.1.1 alpha bundles › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › ARMT1-like_dom 0.61 53.0 5.20e-01 98.5% 91.4%
4939372 4009.1.1.0 alpha bundles › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins 0.61 52.0 5.10e-01 95.4% 97.1%
4968425 4009.1.1.1 alpha bundles › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › ARMT1-like_dom 0.61 54.0 5.28e-01 100.0% 97.1%
5050522 4009.1.1.0 alpha bundles › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins 0.61 50.0 4.89e-01 90.8% 97.1%
3664249 102.1.1.0 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.61 50.0 4.77e-01 95.4% 86.3%
3190824 166.1.1.0 alpha superhelices › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C 0.61 48.0 4.58e-01 86.2% 86.7%
4041830 148.1.3.20 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_2 0.61 49.0 4.96e-01 90.8% 98.5%
5078120 4009.1.1.1 alpha bundles › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › ARMT1-like_dom 0.61 53.0 5.20e-01 100.0% 97.1%
3964153 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.61 47.0 4.49e-01 86.2% 73.3%
4374130 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.60 47.0 4.31e-01 84.6% 65.9%
4999145 148.1.3.3 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › PCP_red 0.60 44.0 4.64e-01 81.5% 92.7%
3563012 142.1.1.22 alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › SCAF11-like_C 0.60 47.0 4.42e-01 86.2% 72.5%
5060163 4009.1.1.0 alpha bundles › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins 0.60 50.0 5.09e-01 100.0% 95.4%
3941718 185.1.2.0 alpha superhelices › Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin-like › Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin/Protein HNS-dependent expression A HdeA › Protein HNS-dependent expression A HdeA 0.60 45.0 4.46e-01 83.1% 90.0%
3978468 148.1.3.55 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › Mg_chelatase_C 0.60 46.0 4.30e-01 83.1% 75.0%
3725958 148.1.1.4 alpha arrays › Histone-like › Histone-related › Histone › CBFD_NFYB_HMF 0.60 44.0 4.04e-01 78.5% 83.5%
5062691 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.60 46.0 4.46e-01 84.6% 90.7%
3650011 7579.1.1.5 a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Peptidase_S10 0.59 47.0 3.08e-01 100.0% 18.4%
3898895 601.1.1.68 alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin › RHG29_45_N 0.59 50.0 4.15e-01 93.8% 75.7%
4024278 148.1.3.17 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › MCM_lid 0.59 50.0 4.44e-01 96.9% 91.6%
4954526 186.1.1.0 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N 0.59 49.0 4.19e-01 98.5% 84.3%
4356513 148.1.1.1 alpha arrays › Histone-like › Histone-related › Histone › Histone 0.58 41.0 3.79e-01 72.3% 88.2%
3979101 186.1.1.8 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_M 0.58 49.0 4.13e-01 100.0% 73.3%
148377 148.1.1.18 alpha arrays › Histone-like › Histone-related › Histone › CENP-S 0.58 44.0 4.02e-01 81.5% 86.4%
4419194 601.4.1.38 alpha bundles › Four-helical up-and-down bundle › Histidine kinase associated sensor domains › Histidine kinase associated sensor domains › RHG29_45_N 0.58 48.0 4.17e-01 93.8% 83.8%
3650404 7579.1.1.5 a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Peptidase_S10 0.58 46.0 2.81e-01 100.0% 13.0%
4990528 101.1.10.0 alpha arrays › HTH › HTH › Cyclin-like 0.58 48.0 4.47e-01 96.9% 76.5%
4034068 186.1.1.5 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_3 0.57 48.0 4.28e-01 98.5% 83.0%
3709879 181.1.1.0 alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins 0.57 44.0 4.23e-01 86.2% 85.3%
3557533 148.1.3.17 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › MCM_lid 0.57 48.0 4.38e-01 95.4% 83.3%
3663220 101.1.1.67 alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_6 0.57 43.0 3.44e-01 83.1% 78.5%
3502334 108.1.1.28 alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_6,EF-hand_7 0.56 46.0 4.33e-01 95.4% 75.9%
4164998 166.1.1.1 alpha superhelices › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › DXPR_C 0.55 42.0 3.74e-01 84.6% 67.0%
4144086 166.1.1.1 alpha superhelices › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › DXPR_C 0.55 41.0 3.62e-01 81.5% 54.0%
4462943 166.1.1.1 alpha superhelices › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › DXPR_C 0.53 42.0 3.78e-01 84.6% 61.1%
4224947 166.1.1.1 alpha superhelices › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › DXPR_C 0.53 40.0 3.52e-01 84.6% 65.7%
1154450 108.1.1.98 alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_1, EF-hand_5, EF-hand_7 0.52 36.0 3.62e-01 75.4% 81.4%
3176801 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.52 43.0 4.39e-01 95.4% 98.5%