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BML_08042016_6_5m_scaffold_18_prodigal-single.1__X__X__00109
Bact-VirBML_08042016_6_5m_scaffold_18_prodigal-single.1__X__X__00109
Identity
- Kingdom:
- phage
Quality
70.3
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 1-62
Domain cluster:
representative
CATH (28)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1z0jB00 | 4.10.860.20 | Few Secondary Structures › Irregular › DNA Excision Repair, Uvrb; Chain A › Rabenosyn, Rab binding domain | 0.77 | 48.0 | 5.29e-01 | 82.3% | 78.4% |
| 1e52A00 | 4.10.860.10 | Few Secondary Structures › Irregular › DNA Excision Repair, Uvrb; Chain A › UVR domain | 0.67 | 43.0 | 4.50e-01 | 82.3% | 71.4% |
| 3vbbE01 | 1.10.287.40 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain | 0.67 | 50.0 | 3.96e-01 | 83.9% | 41.2% |
| 2xzmO02 | 1.10.287.10 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › S15/NS1, RNA-binding | 0.67 | 52.0 | 5.03e-01 | 83.9% | 74.3% |
| 2lw1A00 | 1.10.287.380 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Valyl-tRNA synthetase, C-terminal domain | 0.65 | 49.0 | 4.47e-01 | 82.3% | 65.9% |
| 4x28A03 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.63 | 47.0 | 3.50e-01 | 82.3% | 31.1% |
| 4fppB01 | 1.10.287.130 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Signal transduction histidine kinase, dimerisation/phosphotransfer (DHp) domain | 0.61 | 46.0 | 4.44e-01 | 82.3% | 74.6% |
| 1ap4A00 | 1.10.238.10 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand | 0.61 | 42.0 | 3.82e-01 | 74.2% | 85.4% |
| 2kjgA00 | 1.20.120.970 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.60 | 50.0 | 4.45e-01 | 100.0% | 93.9% |
| 2ycdA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.60 | 43.0 | 3.62e-01 | 90.3% | 42.7% |
| 1bw6A00 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.59 | 44.0 | 4.58e-01 | 85.5% | 91.1% |
| 3nzpB03 | 1.20.58.930 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.58 | 51.0 | 4.76e-01 | 100.0% | 89.9% |
| 1vq8V00 | 1.10.287.310 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.58 | 47.0 | 4.68e-01 | 93.5% | 100.0% |
| 4iluA02 | 1.20.58.1290 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › CarD-like, C-terminal domain | 0.57 | 41.0 | 3.48e-01 | 93.5% | 43.2% |
| 7y9hB01 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.57 | 46.0 | 2.99e-01 | 95.2% | 48.7% |
| 2innB00 | 1.10.620.20 | Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase, subunit A › Ribonucleotide Reductase, subunit A | 0.56 | 47.0 | 2.82e-01 | 96.8% | 85.2% |
| 2mtqA00 | 1.20.58.130 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.55 | 41.0 | 3.99e-01 | 83.9% | 80.8% |
| 1rv2D04 | 1.10.287.690 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › B family DNA polymerase, finger domain | 0.55 | 41.0 | 3.96e-01 | 82.3% | 78.6% |
| 2jrtA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.55 | 41.0 | 3.77e-01 | 95.2% | 60.5% |
| 4o8sA02 | 1.20.58.1790 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › JHP933, helical tail domain | 0.54 | 44.0 | 3.79e-01 | 95.2% | 66.4% |
| 2elhA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.54 | 40.0 | 4.00e-01 | 82.3% | 78.8% |
| 3l4aA00 | 1.10.238.20 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › Pheromone/general odorant binding protein domain | 0.54 | 39.0 | 3.17e-01 | 77.4% | 62.8% |
| 1a5tA03 | 1.20.272.10 | Mainly Alpha › Up-down Bundle › Zinc Finger, Delta Prime; domain 3 › | 0.54 | 44.0 | 3.74e-01 | 98.4% | 62.1% |
| 3zheD01 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.53 | 46.0 | 3.20e-01 | 96.8% | 50.7% |
| 1w36B02 | 1.10.3170.10 | Mainly Alpha › Orthogonal Bundle › Recbcd, chain B, domain 2 › Recbcd, chain B, domain 2 | 0.53 | 46.0 | 3.33e-01 | 100.0% | 81.0% |
| 2nxpB00 | 1.25.40.500 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › TFIID subunit TAF5, NTD2 domain | 0.52 | 41.0 | 3.20e-01 | 88.7% | 61.4% |
| 2qvoA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.52 | 44.0 | 3.96e-01 | 95.2% | 80.5% |
| 3uitA02 | 1.20.1270.460 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.51 | 41.0 | 3.43e-01 | 98.4% | 93.1% |
ECOD (37)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3488979 | 192.5.1.0 ↗ | alpha bundles › Long alpha-hairpin › HR1 repeat › HR1 repeat | 0.80 | 52.0 | 4.02e-01 | 82.3% | 32.8% |
| 4519110 | 192.6.1.0 ↗ | alpha bundles › Long alpha-hairpin › Epsilon subunit of F1F0-ATP synthase C-terminal domain › Epsilon subunit of F1F0-ATP synthase C-terminal domain | 0.79 | 47.0 | 5.18e-01 | 82.3% | 75.5% |
| 4590991 | 192.6.1.0 ↗ | alpha bundles › Long alpha-hairpin › Epsilon subunit of F1F0-ATP synthase C-terminal domain › Epsilon subunit of F1F0-ATP synthase C-terminal domain | 0.74 | 45.0 | 4.99e-01 | 83.9% | 79.2% |
| 4418131 | 192.6.1.0 ↗ | alpha bundles › Long alpha-hairpin › Epsilon subunit of F1F0-ATP synthase C-terminal domain › Epsilon subunit of F1F0-ATP synthase C-terminal domain | 0.73 | 44.0 | 4.88e-01 | 82.3% | 77.6% |
| 3189269 | 3184.1.1.1 ↗ | alpha bundles › mRNA 3'-end-processing protein Rna15p hinge domain › mRNA 3'-end-processing protein Rna15p hinge domain › mRNA 3'-end-processing protein Rna15p hinge domain › CSTF2_hinge | 0.72 | 56.0 | 5.09e-01 | 83.9% | 68.7% |
| 3598908 | 192.4.1.0 ↗ | alpha bundles › Long alpha-hairpin › Ribosomal protein L29 (L29p) › Ribosomal protein L29 (L29p) | 0.71 | 57.0 | 5.79e-01 | 85.5% | 95.0% |
| 4039238 | 192.6.1.1 ↗ | alpha bundles › Long alpha-hairpin › Epsilon subunit of F1F0-ATP synthase C-terminal domain › Epsilon subunit of F1F0-ATP synthase C-terminal domain › ATP-synt_DE | 0.70 | 48.0 | 5.07e-01 | 82.3% | 81.8% |
| 3709727 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.69 | 54.0 | 3.46e-01 | 88.7% | 17.4% |
| 4524004 | 604.11.1.1 ↗ | alpha bundles › Spectrin repeat-like › XseB-like › XseB-like › Exonuc_VII_S | 0.67 | 60.0 | 5.63e-01 | 100.0% | 84.0% |
| 3652408 | 192.7.1.0 ↗ | alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm | 0.67 | 58.0 | 5.10e-01 | 100.0% | 64.2% |
| 3600781 | 3184.1.1.0 ↗ | alpha bundles › mRNA 3'-end-processing protein Rna15p hinge domain › mRNA 3'-end-processing protein Rna15p hinge domain › mRNA 3'-end-processing protein Rna15p hinge domain | 0.66 | 54.0 | 5.52e-01 | 88.7% | 93.3% |
| 4446713 | 604.11.1.1 ↗ | alpha bundles › Spectrin repeat-like › XseB-like › XseB-like › Exonuc_VII_S | 0.66 | 58.0 | 5.45e-01 | 98.4% | 82.7% |
| 3977795 | 5041.1.1.0 ↗ | extended segments › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C | 0.66 | 46.0 | 4.80e-01 | 83.9% | 81.8% |
| 3682015 | 3184.1.1.1 ↗ | alpha bundles › mRNA 3'-end-processing protein Rna15p hinge domain › mRNA 3'-end-processing protein Rna15p hinge domain › mRNA 3'-end-processing protein Rna15p hinge domain › CSTF2_hinge | 0.66 | 53.0 | 4.57e-01 | 88.7% | 58.2% |
| 3468355 | 650.1.1.1 ↗ | alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › DnaJ | 0.65 | 51.0 | 4.16e-01 | 87.1% | 52.5% |
| 4416633 | 604.11.1.1 ↗ | alpha bundles › Spectrin repeat-like › XseB-like › XseB-like › Exonuc_VII_S | 0.65 | 51.0 | 5.23e-01 | 85.5% | 90.0% |
| 4943887 | 247.1.1.0 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase | 0.65 | 50.0 | 3.21e-01 | 88.7% | 18.9% |
| 4367627 | 192.6.1.1 ↗ | alpha bundles › Long alpha-hairpin › Epsilon subunit of F1F0-ATP synthase C-terminal domain › Epsilon subunit of F1F0-ATP synthase C-terminal domain › ATP-synt_DE | 0.65 | 47.0 | 4.93e-01 | 87.1% | 90.6% |
| 4338737 | 192.6.1.0 ↗ | alpha bundles › Long alpha-hairpin › Epsilon subunit of F1F0-ATP synthase C-terminal domain › Epsilon subunit of F1F0-ATP synthase C-terminal domain | 0.63 | 43.0 | 4.90e-01 | 71.0% | 100.0% |
| 4485451 | 192.6.1.9 ↗ | alpha bundles › Long alpha-hairpin › Epsilon subunit of F1F0-ATP synthase C-terminal domain › Epsilon subunit of F1F0-ATP synthase C-terminal domain › PF27469 | 0.63 | 51.0 | 5.40e-01 | 90.3% | 100.0% |
| 3402853 | 192.6.1.0 ↗ | alpha bundles › Long alpha-hairpin › Epsilon subunit of F1F0-ATP synthase C-terminal domain › Epsilon subunit of F1F0-ATP synthase C-terminal domain | 0.62 | 41.0 | 4.41e-01 | 82.3% | 84.0% |
| 4366957 | 192.6.1.0 ↗ | alpha bundles › Long alpha-hairpin › Epsilon subunit of F1F0-ATP synthase C-terminal domain › Epsilon subunit of F1F0-ATP synthase C-terminal domain | 0.60 | 42.0 | 4.75e-01 | 77.4% | 100.0% |
| 3247744 | 192.4.1.12 ↗ | alpha bundles › Long alpha-hairpin › Ribosomal protein L29 (L29p) › Ribosomal protein L29 (L29p) › FmiP_Thoc5 | 0.60 | 51.0 | 4.35e-01 | 96.8% | 73.3% |
| 3319356 | 650.1.1.5 ↗ | alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › CPP1-like | 0.59 | 47.0 | 4.69e-01 | 93.5% | 83.1% |
| 3781183 | 3922.1.1.0 ↗ | alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 | 0.59 | 45.0 | 3.86e-01 | 82.3% | 52.0% |
| 3397045 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.59 | 51.0 | 3.88e-01 | 96.8% | 54.5% |
| 3691300 | 604.12.1.0 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain | 0.59 | 47.0 | 4.45e-01 | 88.7% | 82.7% |
| 3934572 | 109.1.1.6 ↗ | alpha superhelices › Repetitive alpha hairpins › Glutathione S-transferase (GST)-C › Glutathione S-transferase (GST)-C › GST_C_2 | 0.58 | 48.0 | 3.60e-01 | 96.8% | 36.5% |
| None | — | 0.57 | 45.0 | 2.80e-01 | 88.7% | 14.6% | |
| 3900411 | 101.1.1.3 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-binding | 0.57 | 44.0 | 3.94e-01 | 98.4% | 59.6% |
| 3259551 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.57 | 43.0 | 4.06e-01 | 87.1% | 86.3% |
| 3213526 | 192.5.1.14 ↗ | alpha bundles › Long alpha-hairpin › HR1 repeat › HR1 repeat › HR1_TOCA | 0.56 | 50.0 | 4.19e-01 | 100.0% | 88.6% |
| 3686518 | 101.1.2.384 ↗ | alpha arrays › HTH › HTH › winged helix domain › Myb_DNA-bind_8 | 0.56 | 41.0 | 4.30e-01 | 82.3% | 92.7% |
| 3204604 | 6155.1.1.4 ↗ | alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter › MPC | 0.55 | 46.0 | 4.39e-01 | 100.0% | 93.3% |
| 2898272 | 3812.1.1.1 ↗ | alpha bundles › Type III secretion protein YscE › Type III secretion protein YscE › Type III secretion protein YscE › T3SS_needle_E | 0.53 | 44.0 | 4.21e-01 | 91.9% | 95.8% |
| 3588113 | 5042.1.1.1 ↗ | extended segments › Magnesium transport protein CorA, transmembrane region › Magnesium transport protein CorA, transmembrane region › Magnesium transport protein CorA, transmembrane region › CorA | 0.53 | 37.0 | 3.67e-01 | 74.2% | 72.3% |
| 3927278 | 109.4.1.1393 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF26715 | 0.52 | 43.0 | 3.26e-01 | 100.0% | 89.4% |