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BML_08042016_6_5m_scaffold_18_prodigal-single.1__X__X__00111
Bact-VirBML_08042016_6_5m_scaffold_18_prodigal-single.1__X__X__00111
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-65
Domain cluster:
rep: LacPavin_0818_WC40_scaffold_269347_prodigal-single.1__X__X__00180__D2-53
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1z1dB00 | 3.40.1310.20 | Alpha Beta › 3-Layer(aba) Sandwich › Replication Protein E1; Chain: A, › | 0.57 | 45.0 | 3.71e-01 | 92.2% | 66.4% |
| 3uoeA03 | 3.30.60.50 | Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › Hypothetical oxidoreductase yiak; domain 3 | 0.55 | 34.0 | 3.88e-01 | 96.9% | 93.2% |
| 2qa1A01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.54 | 41.0 | 2.74e-01 | 85.9% | 95.6% |
D2
high
residues 68-118
Domain cluster:
representative
CATH (74)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1nhyA01 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.72 | 62.0 | 5.47e-01 | 100.0% | 81.8% |
| 5xpyA02 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.71 | 52.0 | 4.10e-01 | 80.4% | 40.7% |
| 4mdcD01 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.70 | 59.0 | 4.75e-01 | 100.0% | 60.9% |
| 4hs5A00 | 3.30.920.10 | Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Frataxin/CyaY | 0.70 | 57.0 | 4.54e-01 | 92.2% | 83.8% |
| 4exjB01 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.69 | 59.0 | 4.79e-01 | 100.0% | 68.3% |
| 4hwtA02 | 3.40.50.800 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain | 0.68 | 57.0 | 4.56e-01 | 98.0% | 70.9% |
| 4at7A02 | 3.30.460.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 | 0.66 | 44.0 | 3.21e-01 | 70.6% | 26.3% |
| 4jpdA00 | 3.30.920.10 | Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Frataxin/CyaY | 0.65 | 52.0 | 4.17e-01 | 92.2% | 83.5% |
| 3slzA00 | 2.40.70.10 | Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases | 0.64 | 44.0 | 3.44e-01 | 72.5% | 98.2% |
| 1bm8A00 | 3.10.260.10 | Alpha Beta › Roll › Mlu1-box Binding Protein; DNA-binding Domain › Transcription regulator HTH, APSES-type DNA-binding domain | 0.63 | 45.0 | 3.71e-01 | 78.4% | 73.7% |
| 4bc3A02 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.63 | 53.0 | 3.56e-01 | 98.0% | 63.9% |
| 3c12A01 | 2.30.30.910 | Mainly Beta › Roll › SH3 type barrels. › | 0.62 | 51.0 | 5.11e-01 | 92.2% | 98.0% |
| 7wffb01 | 2.70.98.10 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › | 0.62 | 52.0 | 3.23e-01 | 96.1% | 32.5% |
| 1f9qD00 | 2.40.50.40 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.61 | 43.0 | 4.02e-01 | 76.5% | 68.2% |
| 4ddpA00 | 1.10.418.40 | Mainly Alpha › Orthogonal Bundle › Actin-binding Protein, T-fimbrin; domain 1 › Autophagy protein 6/Beclin 1 | 0.61 | 49.0 | 3.39e-01 | 96.1% | 46.2% |
| 4tvcA01 | 2.10.270.10 | Mainly Beta › Ribbon › left handed beta-beta-3-solenoid › Cholin Binding | 0.60 | 37.0 | 2.56e-01 | 74.5% | 16.5% |
| 3f61A02 | 1.10.510.10 | Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 | 0.60 | 47.0 | 3.30e-01 | 88.2% | 45.0% |
| 1iv8A02 | 3.30.1590.10 | Alpha Beta › 2-Layer Sandwich › Maltooligosyl trehalose synthase, domain 2 › Maltooligosyl trehalose synthase, domain 2 | 0.60 | 44.0 | 3.42e-01 | 80.4% | 39.8% |
| 1js3A03 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.60 | 53.0 | 4.29e-01 | 100.0% | 90.7% |
| 1nr4C00 | 2.40.50.40 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.60 | 41.0 | 3.93e-01 | 76.5% | 68.2% |
| 1q67A01 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.59 | 43.0 | 3.22e-01 | 80.4% | 30.7% |
| 6liuC02 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.59 | 52.0 | 3.99e-01 | 100.0% | 81.0% |
| 1ujrA01 | 3.30.720.50 | Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › | 0.59 | 39.0 | 3.38e-01 | 70.6% | 75.9% |
| 3l44A01 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.59 | 51.0 | 3.52e-01 | 100.0% | 52.5% |
| 1ywyA00 | 3.40.1170.40 | Alpha Beta › 3-Layer(aba) Sandwich › MutS, DNA mismatch repair protein, domain I › Protein of unknown function DUF3203 | 0.59 | 40.0 | 3.64e-01 | 72.5% | 52.7% |
| 2h21B01 | 3.90.1410.10 | Alpha Beta › Alpha-Beta Complex › set domain protein methyltransferase, domain 1 › set domain protein methyltransferase, domain 1 | 0.59 | 40.0 | 2.61e-01 | 100.0% | 14.5% |
| 1eqtA00 | 2.40.50.40 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.58 | 40.0 | 3.76e-01 | 74.5% | 65.7% |
| 3p1aA02 | 1.10.510.10 | Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 | 0.58 | 46.0 | 3.30e-01 | 90.2% | 50.3% |
| 1w27A01 | 1.10.275.10 | Mainly Alpha › Orthogonal Bundle › Fumarase C; Chain B, domain 1 › Fumarase/aspartase (N-terminal domain) | 0.58 | 45.0 | 3.00e-01 | 90.2% | 28.5% |
| 4uopA01 | 3.30.1120.170 | Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › | 0.58 | 42.0 | 3.55e-01 | 80.4% | 74.2% |
| 4azsA03 | 1.10.510.10 | Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 | 0.58 | 44.0 | 3.27e-01 | 86.3% | 47.9% |
| 7nmqA01 | 1.20.1170.10 | Mainly Alpha › Up-down Bundle › Hemolysin E; Chain: A; › | 0.57 | 47.0 | 2.92e-01 | 100.0% | 75.1% |
| 4w8kA01 | 3.100.10.20 | Alpha Beta › Ribosomal Protein L15; Chain: K; domain 2 › Ribosomal Protein L15; Chain: K; domain 2 › CRISPR-associated endonuclease Cas1, N-terminal domain | 0.57 | 40.0 | 3.28e-01 | 80.4% | 40.7% |
| 2ijd101 | 2.40.10.120 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.57 | 41.0 | 2.93e-01 | 82.4% | 82.2% |
| 6opmD01 | 1.20.120.920 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CRISPR-associated endonuclease Cas1, C-terminal domain | 0.57 | 47.0 | 3.09e-01 | 100.0% | 25.2% |
| 1f44A01 | 1.10.443.10 | Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core | 0.56 | 47.0 | 3.29e-01 | 100.0% | 69.6% |
| 1d8cA02 | 2.170.170.11 | Mainly Beta › Beta Complex › Malate synthase G - maily-beta sub-domain › Malate synthase G - maily-beta sub-domain | 0.56 | 41.0 | 3.11e-01 | 94.1% | 31.2% |
| 1usgA02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.56 | 39.0 | 2.88e-01 | 74.5% | 92.4% |
| 4abyD00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.56 | 47.0 | 2.96e-01 | 100.0% | 47.6% |
| 4b3xA02 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.56 | 48.0 | 3.41e-01 | 100.0% | 84.9% |
| 4d6wA03 | 2.30.29.130 | Mainly Beta › Roll › PH-domain like › | 0.56 | 40.0 | 3.42e-01 | 80.4% | 70.5% |
| 1ckeA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.56 | 46.0 | 3.15e-01 | 100.0% | 40.6% |
| 1y13A00 | 3.30.479.10 | Alpha Beta › 2-Layer Sandwich › Tetrahydropterin Synthase; Chain A › 6-pyruvoyl tetrahydropterin synthase/QueD | 0.55 | 47.0 | 3.36e-01 | 98.0% | 52.1% |
| 7aooB01 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.55 | 43.0 | 3.21e-01 | 96.1% | 53.7% |
| 6qkgA02 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.55 | 38.0 | 3.10e-01 | 76.5% | 90.1% |
| 1orvA01 | 2.140.10.30 | Mainly Beta › 8 Propeller › Methanol Dehydrogenase; Chain A › Dipeptidylpeptidase IV, N-terminal domain | 0.54 | 41.0 | 2.42e-01 | 84.3% | 24.5% |
| 1ve3A00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.54 | 35.0 | 2.40e-01 | 70.6% | 15.6% |
| 6g0nA01 | 1.50.10.10 | Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › | 0.54 | 39.0 | 2.37e-01 | 78.4% | 13.2% |
| 1x4rA01 | 3.30.720.50 | Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › | 0.54 | 36.0 | 3.14e-01 | 90.2% | 44.3% |
| 3nm6B00 | 3.40.50.1580 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleoside phosphorylase domain | 0.54 | 47.0 | 3.08e-01 | 100.0% | 96.1% |
| 1vx7200 | 3.30.390.110 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › | 0.54 | 40.0 | 3.28e-01 | 84.3% | 49.0% |
| 4e1oA03 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.54 | 44.0 | 3.61e-01 | 94.1% | 86.7% |
| 3nwnA00 | 3.40.850.10 | Alpha Beta › 3-Layer(aba) Sandwich › Kinesin › Kinesin motor domain | 0.53 | 46.0 | 2.90e-01 | 100.0% | 44.8% |
| 2phcB01 | 3.30.1360.40 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › | 0.53 | 46.0 | 3.99e-01 | 100.0% | 86.7% |
| 7d27A02 | 3.40.1190.10 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain | 0.53 | 47.0 | 3.06e-01 | 100.0% | 35.2% |
| 6i18A04 | 2.80.10.50 | Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › | 0.53 | 39.0 | 3.25e-01 | 84.3% | 85.0% |
| 3n6rA03 | 3.30.700.30 | Alpha Beta › 2-Layer Sandwich › Glycoprotein, Type 4 Pilin › | 0.53 | 45.0 | 3.39e-01 | 98.0% | 77.4% |
| 4k22B01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.53 | 44.0 | 2.92e-01 | 100.0% | 41.2% |
| 4by6D02 | 1.25.40.800 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.52 | 40.0 | 2.63e-01 | 82.4% | 25.8% |
| 5i92F01 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.52 | 43.0 | 3.05e-01 | 96.1% | 54.5% |
| 2lqoA00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.52 | 41.0 | 3.59e-01 | 96.1% | 71.6% |
| 3l60A01 | 3.30.559.10 | Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain | 0.52 | 46.0 | 3.02e-01 | 100.0% | 42.7% |
| 4py5A01 | 3.30.310.10 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein | 0.52 | 43.0 | 3.93e-01 | 98.0% | 100.0% |
| 7x0fA01 | 3.30.559.10 | Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain | 0.52 | 47.0 | 3.32e-01 | 100.0% | 85.8% |
| 3o0hB02 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.52 | 42.0 | 3.24e-01 | 90.2% | 93.2% |
| 4ritA01 | 3.90.1150.170 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › | 0.52 | 44.0 | 2.90e-01 | 96.1% | 41.8% |
| 2jwyA01 | 2.60.40.1620 | Mainly Beta › Sandwich › Immunoglobulin-like › Lipoprotein YajI-like | 0.52 | 36.0 | 2.85e-01 | 80.4% | 91.1% |
| 3nkdA01 | 3.100.10.20 | Alpha Beta › Ribosomal Protein L15; Chain: K; domain 2 › Ribosomal Protein L15; Chain: K; domain 2 › CRISPR-associated endonuclease Cas1, N-terminal domain | 0.51 | 41.0 | 3.54e-01 | 90.2% | 77.4% |
| 5gaeG01 | 3.90.930.12 | Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › Ribosomal protein L6 | 0.51 | 40.0 | 3.57e-01 | 94.1% | 92.6% |
| 4iv9A01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.51 | 40.0 | 2.71e-01 | 100.0% | 77.4% |
| 2ra1A05 | 2.60.40.2120 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.51 | 35.0 | 3.04e-01 | 70.6% | 72.1% |
| 1miwA01 | 3.30.460.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 | 0.51 | 36.0 | 2.80e-01 | 80.4% | 56.7% |
| 2dx0B01 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.50 | 38.0 | 3.48e-01 | 88.2% | 70.7% |
| 3pnnA00 | 3.90.550.10 | Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 0.50 | 41.0 | 2.62e-01 | 100.0% | 34.9% |
ECOD (80)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4969869 | 298.1.1.24 ↗ | a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › GFO_IDH_MocA_C3 | 0.75 | 50.0 | 3.44e-01 | 70.6% | 82.3% |
| 2417924 | 1021.1.1.0 ↗ | a+b two layers › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases | 0.72 | 52.0 | 4.45e-01 | 78.4% | 49.4% |
| 3184127 | 2485.1.1.0 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like | 0.72 | 59.0 | 5.23e-01 | 94.1% | 80.0% |
| 4218376 | 241.2.1.1 ↗ | a+b two layers › Type III secretory system chaperone-like › Frataxin-like › Frataxin-like › Frataxin_Cyay | 0.71 | 58.0 | 4.67e-01 | 92.2% | 86.0% |
| 223484 | 241.2.1.1 ↗ | a+b two layers › Type III secretory system chaperone-like › Frataxin-like › Frataxin-like › Frataxin_Cyay | 0.70 | 57.0 | 4.54e-01 | 92.2% | 83.8% |
| 3965099 | 241.2.1.1 ↗ | a+b two layers › Type III secretory system chaperone-like › Frataxin-like › Frataxin-like › Frataxin_Cyay | 0.70 | 58.0 | 4.57e-01 | 92.2% | 84.8% |
| 4313104 | 241.2.1.1 ↗ | a+b two layers › Type III secretory system chaperone-like › Frataxin-like › Frataxin-like › Frataxin_Cyay | 0.68 | 58.0 | 4.66e-01 | 98.0% | 84.6% |
| 4515677 | 241.2.1.1 ↗ | a+b two layers › Type III secretory system chaperone-like › Frataxin-like › Frataxin-like › Frataxin_Cyay | 0.67 | 54.0 | 4.23e-01 | 92.2% | 78.1% |
| 3331838 | 386.1.1.4 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-BED | 0.67 | 46.0 | 4.68e-01 | 72.5% | 78.0% |
| 4143716 | 241.2.1.1 ↗ | a+b two layers › Type III secretory system chaperone-like › Frataxin-like › Frataxin-like › Frataxin_Cyay | 0.67 | 54.0 | 4.29e-01 | 92.2% | 84.5% |
| 3391564 | 64.1.1.0 ↗ | beta meanders › WW domain-like › WW domain › WW domain | 0.67 | 52.0 | 5.24e-01 | 86.3% | 86.0% |
| 3970136 | 241.2.1.0 ↗ | a+b two layers › Type III secretory system chaperone-like › Frataxin-like › Frataxin-like | 0.66 | 53.0 | 4.28e-01 | 92.2% | 85.7% |
| 3271778 | 2485.1.1.0 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like | 0.66 | 57.0 | 4.25e-01 | 100.0% | 45.9% |
| 4975877 | 2487.1.1.0 ↗ | a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" | 0.66 | 56.0 | 4.06e-01 | 98.0% | 65.2% |
| 5059435 | 2485.1.1.61 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › DCC1-like | 0.66 | 56.0 | 4.75e-01 | 100.0% | 78.9% |
| 5059099 | 241.2.1.0 ↗ | a+b two layers › Type III secretory system chaperone-like › Frataxin-like › Frataxin-like | 0.66 | 54.0 | 4.70e-01 | 100.0% | 89.8% |
| 2442362 | 1021.1.1.2 ↗ | a+b two layers › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases › RNA_hel_CTD | 0.66 | 47.0 | 4.45e-01 | 78.4% | 66.7% |
| 4984442 | 221.4.1.1 ↗ | a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX | 0.65 | 48.0 | 3.40e-01 | 82.4% | 23.9% |
| 3593362 | 1021.1.1.0 ↗ | a+b two layers › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases | 0.65 | 48.0 | 4.13e-01 | 82.4% | 50.6% |
| 4269649 | 241.2.1.1 ↗ | a+b two layers › Type III secretory system chaperone-like › Frataxin-like › Frataxin-like › Frataxin_Cyay | 0.64 | 51.0 | 4.11e-01 | 92.2% | 81.8% |
| 3290774 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.64 | 44.0 | 3.43e-01 | 72.5% | 55.5% |
| 3936226 | 221.4.1.1 ↗ | a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX | 0.64 | 47.0 | 3.14e-01 | 80.4% | 19.5% |
| 5012906 | 2498.2.1.6 ↗ | mixed a+b and a/b › Zincin-like › beta-N-acetylhexosaminidase-like domain › beta-N-acetylhexosaminidase-like domain › S_layer_C | 0.64 | 55.0 | 3.66e-01 | 100.0% | 73.1% |
| 3535695 | 1021.1.1.2 ↗ | a+b two layers › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases › RNA_hel_CTD | 0.64 | 44.0 | 3.73e-01 | 76.5% | 40.0% |
| 3735414 | 101.1.17.0 ↗ | alpha arrays › HTH › HTH › FF domain | 0.63 | 45.0 | 2.94e-01 | 82.4% | 18.5% |
| 3244769 | 4099.1.1.28 ↗ | a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › PF29108 | 0.63 | 51.0 | 4.45e-01 | 100.0% | 90.0% |
| 5001324 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.63 | 47.0 | 3.79e-01 | 82.4% | 44.8% |
| 3733997 | 241.2.1.1 ↗ | a+b two layers › Type III secretory system chaperone-like › Frataxin-like › Frataxin-like › Frataxin_Cyay | 0.61 | 48.0 | 3.76e-01 | 92.2% | 85.6% |
| 5078989 | 2.1.1.15 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon | 0.61 | 47.0 | 3.45e-01 | 84.3% | 85.2% |
| 3578377 | 206.1.1.0 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase | 0.61 | 46.0 | 3.16e-01 | 86.3% | 45.4% |
| 4650292 | 4.8.1.23 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › RemA-like | 0.60 | 44.0 | 3.85e-01 | 78.4% | 81.2% |
| 3515993 | 220.1.1.13 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › DCP1 | 0.60 | 45.0 | 3.50e-01 | 82.4% | 40.0% |
| 4929483 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.60 | 44.0 | 3.46e-01 | 82.4% | 38.3% |
| 3389678 | 3006.1.1.3 ↗ | a+b two layers › Sm-Like archaeal protein Smap3, C-terminal domain › Sm-Like archaeal protein Smap3, C-terminal domain › Sm-Like archaeal protein Smap3, C-terminal domain › AD | 0.60 | 46.0 | 3.91e-01 | 94.1% | 67.0% |
| 4112414 | 2004.1.1.301 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_27 | 0.59 | 49.0 | 3.08e-01 | 100.0% | 52.2% |
| 4942967 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.59 | 45.0 | 3.32e-01 | 82.4% | 55.4% |
| 3365178 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.59 | 46.0 | 4.38e-01 | 94.1% | 76.9% |
| 3438045 | 386.1.1.20 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-met | 0.59 | 46.0 | 4.37e-01 | 94.1% | 76.9% |
| 5021437 | 2.9.1.1 ↗ | beta barrels › OB-fold › RNB domain-like › RNB domain-like › RNB | 0.59 | 48.0 | 3.02e-01 | 98.0% | 17.2% |
| 4279367 | 3016.1.1.0 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases | 0.58 | 49.0 | 4.22e-01 | 94.1% | 91.3% |
| 3943640 | 4.8.1.0 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like | 0.58 | 40.0 | 4.12e-01 | 72.5% | 82.0% |
| 3476114 | 2484.1.1.1 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › HSP70 | 0.58 | 48.0 | 2.88e-01 | 100.0% | 50.4% |
| 4070661 | 3016.1.1.0 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases | 0.58 | 47.0 | 4.37e-01 | 90.2% | 100.0% |
| 5045815 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.58 | 44.0 | 4.05e-01 | 84.3% | 81.4% |
| 4032017 | 2004.1.1.301 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_27 | 0.58 | 48.0 | 2.78e-01 | 100.0% | 68.9% |
| 3952778 | 101.1.2.574 ↗ | alpha arrays › HTH › HTH › winged helix domain › PF26520 | 0.57 | 42.0 | 3.71e-01 | 84.3% | 92.9% |
| 2392631 | 3016.1.1.4 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › Pyridoxal_deC | 0.57 | 49.0 | 3.69e-01 | 100.0% | 78.4% |
| 3385884 | 2003.1.15.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Glycosyltransferase Maf N-terminal domain › Maf_flag10_N | 0.57 | 50.0 | 3.40e-01 | 100.0% | 69.5% |
| 3949260 | 4120.1.1.0 ↗ | few secondary structure elements › Tim10/DDP › Tim10/DDP › Tim10/DDP | 0.57 | 49.0 | 3.86e-01 | 100.0% | 45.5% |
| 3981360 | 4.1.1.188 ↗ | beta barrels › SH3 › SH3 › SH3 › Imm26 | 0.57 | 39.0 | 2.83e-01 | 70.6% | 62.1% |
| 3667031 | 3016.1.1.0 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases | 0.57 | 47.0 | 4.18e-01 | 94.1% | 98.7% |
| 3853992 | 252.1.1.0 ↗ | a+b two layers › DNA-binding domain › Methyl-CpG-binding domain, MBD › Methyl-CpG-binding domain, MBD | 0.56 | 49.0 | 4.50e-01 | 100.0% | 77.9% |
| 5057701 | 2.1.1.15 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon | 0.56 | 48.0 | 3.57e-01 | 96.1% | 94.1% |
| 4486492 | 3239.1.1.1 ↗ | alpha complex topology › Cas1 › Cas1 › Cas1 › Cas_Cas1 | 0.56 | 47.0 | 2.93e-01 | 100.0% | 33.6% |
| 4930899 | 243.6.1.9 ↗ | a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › TGT_C2 | 0.56 | 45.0 | 4.06e-01 | 98.0% | 81.2% |
| 4351915 | 325.1.2.1 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Molybdopterin synthase subunit MoaE › MoaE | 0.56 | 41.0 | 2.94e-01 | 78.4% | 74.2% |
| None | — | 0.56 | 48.0 | 3.21e-01 | 100.0% | 90.6% | |
| 5034033 | 2003.1.2.15 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 | 0.56 | 47.0 | 2.93e-01 | 98.0% | 64.8% |
| 4990102 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.56 | 40.0 | 4.14e-01 | 82.4% | 100.0% |
| 3967106 | 2003.1.5.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases | 0.56 | 39.0 | 2.64e-01 | 78.4% | 27.7% |
| 4997639 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.56 | 47.0 | 3.82e-01 | 100.0% | 64.8% |
| 3973165 | 818.1.1.0 ↗ | a+b two layers › DNA topoisomerase I domain › DNA topoisomerase I domain › DNA topoisomerase I domain | 0.55 | 40.0 | 3.58e-01 | 82.4% | 71.2% |
| 4995927 | 3715.1.1.0 ↗ | a+b two layers › Ribosomal protein L22e › Ribosomal protein L22e › Ribosomal protein L22e | 0.55 | 40.0 | 3.44e-01 | 84.3% | 46.7% |
| 3991594 | 601.42.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › Helical bundle in ROQ domain › Helical bundle in ROQ domain | 0.55 | 48.0 | 3.36e-01 | 100.0% | 38.8% |
| 3974816 | 2487.1.1.0 ↗ | a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" | 0.55 | 37.0 | 2.50e-01 | 70.6% | 81.5% |
| 3933566 | 601.42.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › Helical bundle in ROQ domain › Helical bundle in ROQ domain | 0.54 | 48.0 | 3.32e-01 | 100.0% | 37.7% |
| 4932873 | 2498.1.1.0 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" | 0.54 | 48.0 | 3.24e-01 | 100.0% | 35.6% |
| 5752 | 230.1.1.3 ↗ | a+b two layers › T-fold › Tetrahydrobiopterin biosynthesis enzymes-like › Tetrahydrobiopterin biosynthesis enzymes-like › PTPS | 0.54 | 46.0 | 3.27e-01 | 98.0% | 50.9% |
| 3416069 | 331.1.1.0 ↗ | a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like | 0.53 | 43.0 | 4.02e-01 | 100.0% | 81.4% |
| 2126729 | 2003.1.2.11 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain | 0.53 | 47.0 | 3.61e-01 | 100.0% | 54.3% |
| 4997494 | 3435.1.1.0 ↗ | a+b two layers › Recombination-associated protein rdgC › Recombination-associated protein rdgC › Recombination-associated protein rdgC | 0.53 | 47.0 | 3.06e-01 | 100.0% | 81.4% |
| 4265511 | 4.8.1.23 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › RemA-like | 0.52 | 36.0 | 3.19e-01 | 78.4% | 72.2% |
| 3714105 | 304.48.1.11 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RNA_pol | 0.52 | 43.0 | 2.94e-01 | 98.0% | 74.2% |
| 3499542 | 389.1.1.0 ↗ | few secondary structure elements › EGF-like › EGF-related › EGF/Laminin | 0.52 | 36.0 | 3.79e-01 | 88.2% | 84.4% |
| 4022896 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.51 | 36.0 | 2.56e-01 | 76.5% | 64.6% |
| 3707513 | 2004.1.1.250 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinesin,Microtub_bd | 0.51 | 42.0 | 2.65e-01 | 98.0% | 63.6% |
| 4979236 | 2003.1.10.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › PreATP-grasp domain | 0.50 | 37.0 | 3.06e-01 | 82.4% | 58.0% |
| 4864430 | 3740.1.1.1 ↗ | alpha arrays › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › FrhB_FdhB_N,FrhB_FdhB_C | 0.50 | 44.0 | 2.80e-01 | 100.0% | 93.7% |
| 3802019 | 7516.1.1.0 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases | 0.50 | 40.0 | 2.80e-01 | 100.0% | 32.1% |
| 2753367 | 219.1.1.43 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › CoV_peptidase | 0.50 | 41.0 | 2.85e-01 | 100.0% | 31.2% |