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BML_08042016_6_5m_scaffold_18_prodigal-single.1__X__X__00135
Bact-VirBML_08042016_6_5m_scaffold_18_prodigal-single.1__X__X__00135
Identity
- Kingdom:
- phage
Quality
74.6
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 4-67
Domain cluster:
representative
CATH (25)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2looA02 | 1.10.10.1740 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Transmembrane protein 14-like | 0.66 | 47.0 | 4.52e-01 | 82.8% | 65.3% |
| 5f1cA01 | 1.10.287.940 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › atp-gated p2x4 ion channel | 0.66 | 46.0 | 4.81e-01 | 73.4% | 79.7% |
| 4ffeX00 | 3.30.500.10 | Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like | 0.64 | 44.0 | 3.34e-01 | 71.9% | 60.7% |
| 1epwA01 | 3.90.1240.10 | Alpha Beta › Alpha-Beta Complex › Zincin-like › "Metalloproteases (""zincins""), catalytic domain like" | 0.62 | 53.0 | 3.28e-01 | 100.0% | 80.8% |
| 2fpqA00 | 3.90.1240.10 | Alpha Beta › Alpha-Beta Complex › Zincin-like › "Metalloproteases (""zincins""), catalytic domain like" | 0.62 | 53.0 | 3.31e-01 | 100.0% | 82.6% |
| 5zyrA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.61 | 46.0 | 3.56e-01 | 82.8% | 87.4% |
| 1xtfA00 | 3.90.1240.10 | Alpha Beta › Alpha-Beta Complex › Zincin-like › "Metalloproteases (""zincins""), catalytic domain like" | 0.61 | 52.0 | 3.21e-01 | 100.0% | 81.3% |
| 2lc0A00 | 3.30.2320.60 | Alpha Beta › 2-Layer Sandwich › hypothetical protein PF0899 fold › FhaA, phosphopeptide-binding domain (DUF3662) | 0.60 | 41.0 | 3.25e-01 | 70.3% | 68.9% |
| 2zj2A03 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.60 | 36.0 | 3.37e-01 | 81.2% | 45.2% |
| 4x28A01 | 1.10.540.10 | Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain | 0.58 | 39.0 | 3.28e-01 | 70.3% | 52.2% |
| 3cdhA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.57 | 42.0 | 3.42e-01 | 81.2% | 88.8% |
| 4xr7F02 | 1.10.287.3700 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.55 | 38.0 | 3.47e-01 | 73.4% | 72.2% |
| 1toaA01 | 3.40.50.1980 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain | 0.55 | 47.0 | 3.67e-01 | 98.4% | 75.5% |
| 2b7uA01 | 3.40.420.10 | Alpha Beta › 3-Layer(aba) Sandwich › Ricin (A subunit); domain 1 › Ricin (A subunit), domain 1 | 0.54 | 37.0 | 2.78e-01 | 71.9% | 89.0% |
| 4w4kA00 | 1.10.287.850 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HP0062-like domain | 0.54 | 38.0 | 3.57e-01 | 75.0% | 85.4% |
| 7pbkB02 | 1.10.150.20 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain | 0.54 | 36.0 | 2.96e-01 | 71.9% | 43.0% |
| 4h63H01 | 1.20.58.1710 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.54 | 36.0 | 3.52e-01 | 75.0% | 62.5% |
| 2yyiA03 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.54 | 38.0 | 2.67e-01 | 75.0% | 39.3% |
| 1e1hB01 | 1.20.58.540 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.53 | 41.0 | 3.53e-01 | 84.4% | 83.5% |
| 2fxaA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.52 | 43.0 | 3.34e-01 | 95.3% | 64.7% |
| 5zr4A01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.52 | 40.0 | 3.42e-01 | 82.8% | 90.2% |
| 2isyA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.51 | 44.0 | 3.44e-01 | 95.3% | 73.9% |
| 2jiiA02 | 1.10.510.10 | Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 | 0.51 | 43.0 | 3.17e-01 | 100.0% | 70.0% |
| 3hwcA03 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.51 | 40.0 | 2.82e-01 | 85.9% | 26.2% |
| 1uajA02 | 1.10.1270.20 | Mainly Alpha › Orthogonal Bundle › Trp Operon Repressor; Chain A › tRNA(m1g37)methyltransferase, domain 2 | 0.51 | 37.0 | 3.59e-01 | 89.1% | 68.5% |
ECOD (35)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3717906 | 5050.1.1.9 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 | 0.75 | 51.0 | 3.47e-01 | 70.3% | 20.9% |
| 3712415 | 5050.1.1.0 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter | 0.73 | 51.0 | 3.59e-01 | 73.4% | 24.1% |
| 5070087 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.71 | 50.0 | 4.58e-01 | 75.0% | 56.5% |
| 3406058 | 5076.1.1.1 ↗ | alpha complex topology › Mitochondrial ADP/ATP carrier-like › Mitochondrial ADP/ATP carrier › Mitochondrial ADP/ATP carrier › Mito_carr | 0.70 | 50.0 | 3.24e-01 | 76.6% | 40.0% |
| 2666639 | 2498.1.1.15 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M27 | 0.66 | 54.0 | 3.34e-01 | 93.8% | 78.4% |
| 3903618 | 219.1.1.54 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C98 | 0.65 | 50.0 | 3.29e-01 | 84.4% | 20.0% |
| 4586962 | 101.1.2.309 ↗ | alpha arrays › HTH › HTH › winged helix domain › GPAT_C | 0.65 | 46.0 | 3.75e-01 | 75.0% | 80.0% |
| 4937828 | 148.1.1.4 ↗ | alpha arrays › Histone-like › Histone-related › Histone › CBFD_NFYB_HMF | 0.64 | 41.0 | 3.95e-01 | 70.3% | 56.0% |
| 3483301 | 4964.1.1.0 ↗ | alpha arrays › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I | 0.62 | 43.0 | 3.29e-01 | 71.9% | 38.7% |
| 4644045 | 101.11.1.1 ↗ | alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › PNPase | 0.61 | 47.0 | 4.03e-01 | 82.8% | 56.2% |
| 3201554 | 150.1.1.98 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin › Vwaint | 0.61 | 43.0 | 3.58e-01 | 75.0% | 43.3% |
| 4932665 | 181.1.1.0 ↗ | alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins | 0.60 | 41.0 | 3.68e-01 | 70.3% | 51.1% |
| 3993152 | 109.4.1.499 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › INTS5_C | 0.60 | 48.0 | 3.12e-01 | 90.6% | 47.1% |
| 3183367 | 109.4.1.356 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Fungal_trans | 0.60 | 50.0 | 3.41e-01 | 98.4% | 54.8% |
| 5012947 | 1075.3.1.1 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type I ABC importer transmembrane domain fold › Type I ABC importer transmembrane domain fold › BPD_transp_1 | 0.60 | 45.0 | 3.20e-01 | 84.4% | 83.1% |
| 1511065 | 101.1.2.6 ↗ | alpha arrays › HTH › HTH › winged helix domain › GntR | 0.59 | 42.0 | 3.49e-01 | 81.2% | 44.4% |
| 4022889 | 601.1.2.0 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › I/LWEQ domain (Pfam 01608) | 0.58 | 44.0 | 3.12e-01 | 82.8% | 49.5% |
| 3301914 | 109.27.1.3 ↗ | alpha superhelices › Repetitive alpha hairpins › BACK domain › BACK domain › NPH3 | 0.57 | 42.0 | 3.05e-01 | 82.8% | 36.0% |
| 4277444 | 2484.1.1.97 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Cas9_RuvC | 0.57 | 47.0 | 3.14e-01 | 96.9% | 72.6% |
| 3655694 | 4992.1.1.0 ↗ | extended segments › RelB-like › RelB-like › RelB-like | 0.56 | 38.0 | 3.58e-01 | 73.4% | 54.1% |
| 5050369 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.56 | 38.0 | 3.47e-01 | 71.9% | 84.4% |
| 4346887 | 605.1.1.1 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA | 0.56 | 38.0 | 3.66e-01 | 73.4% | 61.3% |
| 3824428 | 101.1.2.396 ↗ | alpha arrays › HTH › HTH › winged helix domain › WHD_ROQ1 | 0.56 | 42.0 | 3.33e-01 | 81.2% | 56.2% |
| 3954310 | 5046.1.1.0 ↗ | extended segments › F-type ATP synthase subunit b › F-type ATP synthase subunit b › F-type ATP synthase subunit b | 0.55 | 37.0 | 2.55e-01 | 70.3% | 18.7% |
| 3277618 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.55 | 39.0 | 3.73e-01 | 75.0% | 68.0% |
| 3277186 | 4964.1.1.1 ↗ | alpha arrays › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › DNA_pol_A | 0.54 | 36.0 | 3.02e-01 | 70.3% | 42.4% |
| 3943344 | 183.1.1.0 ↗ | alpha duplicates or obligate multimers › Iron-dependent repressor protein, dimerization domain › Iron-dependent repressor protein, dimerization domain › Iron-dependent repressor protein, dimerization domain | 0.54 | 41.0 | 3.16e-01 | 81.2% | 65.0% |
| 4965164 | 101.1.2.392 ↗ | alpha arrays › HTH › HTH › winged helix domain › SNRNP200_wHTH | 0.53 | 39.0 | 3.44e-01 | 78.1% | 84.2% |
| 1385096 | 633.6.1.3 ↗ | alpha bundles › Bromodomain-like › Acyl-CoA dehydrogenase C-terminal domain-like › Acyl-CoA dehydrogenase C-terminal domain-like › HpaB | 0.53 | 38.0 | 2.66e-01 | 75.0% | 39.2% |
| 4029683 | 109.4.1.109 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Sel1 | 0.53 | 37.0 | 2.18e-01 | 81.2% | 7.7% |
| 3862747 | 603.1.1.0 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins | 0.53 | 39.0 | 3.62e-01 | 81.2% | 80.0% |
| 4953298 | 101.1.2.934 ↗ | alpha arrays › HTH › HTH › winged helix domain › HVO_A0261_N | 0.52 | 40.0 | 3.18e-01 | 82.8% | 77.7% |
| 5053927 | 101.1.2.21 ↗ | alpha arrays › HTH › HTH › winged helix domain › Fe_dep_repress | 0.52 | 40.0 | 3.10e-01 | 82.8% | 69.3% |
| 4986171 | 101.1.2.150 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_45 | 0.52 | 39.0 | 3.53e-01 | 82.8% | 62.2% |
| 5075623 | 109.2.1.14 ↗ | alpha superhelices › Repetitive alpha hairpins › alpha/alpha toroid › alpha/alpha toroid › DUF608 | 0.51 | 44.0 | 2.70e-01 | 100.0% | 40.7% |