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BML_08042016_6_5m_scaffold_18_prodigal-single.1__X__X__00178
Bact-VirBML_08042016_6_5m_scaffold_18_prodigal-single.1__X__X__00178
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 36-92
Domain cluster:
representative
CATH (35)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 7mh2A01 | 3.30.2320.10 | Alpha Beta › 2-Layer Sandwich › hypothetical protein PF0899 fold › hypothetical protein PF0899 domain | 0.72 | 58.0 | 4.98e-01 | 89.5% | 67.7% |
| 3bjqA00 | 3.90.1690.10 | Alpha Beta › Alpha-Beta Complex › phage-related protein like fold › phage-related protein like domain | 0.70 | 61.0 | 3.89e-01 | 100.0% | 45.6% |
| 7awtE02 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.69 | 54.0 | 5.00e-01 | 87.7% | 89.3% |
| 2e0zC03 | 3.30.2320.10 | Alpha Beta › 2-Layer Sandwich › hypothetical protein PF0899 fold › hypothetical protein PF0899 domain | 0.69 | 55.0 | 4.69e-01 | 89.5% | 65.6% |
| 4bxoA01 | 3.40.50.10130 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.69 | 57.0 | 4.33e-01 | 94.7% | 39.3% |
| 1szqA02 | 3.30.1330.120 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › 2-methylcitrate dehydratase PrpD | 0.68 | 56.0 | 4.23e-01 | 93.0% | 76.8% |
| 3dktA02 | 3.30.2320.10 | Alpha Beta › 2-Layer Sandwich › hypothetical protein PF0899 fold › hypothetical protein PF0899 domain | 0.67 | 54.0 | 4.57e-01 | 89.5% | 65.3% |
| 4euyA00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.66 | 55.0 | 4.88e-01 | 94.7% | 76.7% |
| 2bgwB01 | 3.40.50.10130 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.65 | 56.0 | 4.27e-01 | 96.5% | 42.0% |
| 1wjkA01 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.64 | 52.0 | 4.81e-01 | 94.7% | 84.6% |
| 4v1ag00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.64 | 53.0 | 4.05e-01 | 98.2% | 47.3% |
| 5a1nB00 | 1.20.1050.130 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.62 | 52.0 | 3.65e-01 | 100.0% | 58.8% |
| 5jpoD01 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.62 | 51.0 | 4.53e-01 | 93.0% | 90.2% |
| 3m1gA01 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.61 | 50.0 | 4.04e-01 | 94.7% | 52.5% |
| 7nz1G01 | 2.40.40.20 | Mainly Beta › Beta Barrel › Barwin-like endoglucanases › | 0.61 | 48.0 | 4.04e-01 | 86.0% | 65.6% |
| 1ti2A04 | 2.40.40.20 | Mainly Beta › Beta Barrel › Barwin-like endoglucanases › | 0.61 | 50.0 | 3.67e-01 | 91.2% | 73.5% |
| 2r0cA03 | 3.40.30.120 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › | 0.60 | 48.0 | 3.96e-01 | 93.0% | 53.4% |
| 2iv2X04 | 2.40.40.20 | Mainly Beta › Beta Barrel › Barwin-like endoglucanases › | 0.60 | 49.0 | 4.09e-01 | 89.5% | 62.6% |
| 2fnoA01 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.60 | 48.0 | 4.17e-01 | 93.0% | 81.9% |
| 1h0hA04 | 2.40.40.20 | Mainly Beta › Beta Barrel › Barwin-like endoglucanases › | 0.60 | 48.0 | 3.44e-01 | 89.5% | 61.4% |
| 2fa8B00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.58 | 47.0 | 4.19e-01 | 94.7% | 73.6% |
| 2ewcB00 | 3.30.1330.40 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › RutC-like | 0.58 | 43.0 | 3.43e-01 | 80.7% | 77.7% |
| 7febA01 | 3.40.30.60 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › FHIPEP family, domain 1 | 0.58 | 46.0 | 3.64e-01 | 91.2% | 50.8% |
| 3gtzA00 | 3.30.1330.40 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › RutC-like | 0.58 | 43.0 | 3.50e-01 | 82.5% | 80.0% |
| 3q18A01 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.58 | 46.0 | 3.75e-01 | 94.7% | 55.8% |
| 3k12D00 | 3.30.1330.40 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › RutC-like | 0.57 | 42.0 | 3.38e-01 | 80.7% | 76.7% |
| 2pe3D01 | 3.40.630.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases | 0.57 | 46.0 | 3.18e-01 | 100.0% | 68.1% |
| 3v4dB00 | 3.30.1330.40 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › RutC-like | 0.57 | 42.0 | 3.33e-01 | 80.7% | 77.6% |
| 3l4eA00 | 3.40.50.880 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Class I glutamine amidotransferase (GATase) domain | 0.56 | 46.0 | 3.30e-01 | 100.0% | 100.0% |
| 2br6A01 | 3.60.15.10 | Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like | 0.54 | 46.0 | 3.14e-01 | 100.0% | 50.2% |
| 3pl5A03 | 3.30.1180.10 | Alpha Beta › 2-Layer Sandwich › Hypothetical Protein Tm841; Chain: A;domain 3 › | 0.53 | 39.0 | 3.18e-01 | 82.5% | 44.6% |
| 5ysqB00 | 3.40.1190.20 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase | 0.53 | 43.0 | 2.83e-01 | 94.7% | 53.6% |
| 7kgcA01 | 3.30.1330.40 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › RutC-like | 0.53 | 37.0 | 3.11e-01 | 80.7% | 78.5% |
| 3ljsA00 | 3.40.1190.20 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase | 0.53 | 39.0 | 2.56e-01 | 86.0% | 42.8% |
| 3d1cA02 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.52 | 41.0 | 3.41e-01 | 93.0% | 81.6% |
ECOD (53)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3088027 | 2485.3.1.3 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid | 0.77 | 64.0 | 4.12e-01 | 93.0% | 39.9% |
| 4125320 | 298.4.1.2 ↗ | a+b two layers › FwdE/GAPDH domain-like › V-type ATPase subunit E › V-type ATPase subunit E › FliH | 0.73 | 59.0 | 5.19e-01 | 89.5% | 64.7% |
| 3176422 | 2008.1.1.7 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › ERCC4 | 0.72 | 63.0 | 4.21e-01 | 100.0% | 35.7% |
| 3952465 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.71 | 61.0 | 3.91e-01 | 96.5% | 50.7% |
| 4097188 | 298.4.1.2 ↗ | a+b two layers › FwdE/GAPDH domain-like › V-type ATPase subunit E › V-type ATPase subunit E › FliH | 0.70 | 57.0 | 4.59e-01 | 89.5% | 50.0% |
| 1807471 | 298.4.1.2 ↗ | a+b two layers › FwdE/GAPDH domain-like › V-type ATPase subunit E › V-type ATPase subunit E › FliH | 0.70 | 57.0 | 4.56e-01 | 91.2% | 47.4% |
| 3277785 | 2485.3.1.0 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 | 0.70 | 56.0 | 3.66e-01 | 89.5% | 38.5% |
| 3961851 | 2485.1.1.9 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › 2Fe-2S_thioredx | 0.69 | 56.0 | 4.18e-01 | 94.7% | 45.0% |
| 3629955 | 298.3.1.0 ↗ | a+b two layers › FwdE/GAPDH domain-like › Serine dehydratase beta chain-like › Serine dehydratase beta chain-like | 0.69 | 56.0 | 4.49e-01 | 93.0% | 63.3% |
| 2784294 | 2485.1.1.0 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like | 0.68 | 58.0 | 5.36e-01 | 93.0% | 93.0% |
| 3895050 | 2008.1.1.7 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › ERCC4 | 0.68 | 60.0 | 4.27e-01 | 100.0% | 36.5% |
| 3479851 | 2485.1.1.0 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like | 0.68 | 58.0 | 4.41e-01 | 98.2% | 50.0% |
| 5011070 | 2485.1.1.0 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like | 0.68 | 53.0 | 5.15e-01 | 89.5% | 76.9% |
| 4505098 | 2008.1.1.149 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PF30140 | 0.67 | 57.0 | 4.35e-01 | 98.2% | 47.9% |
| 3172913 | 2008.1.1.149 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PF30140 | 0.67 | 58.0 | 4.32e-01 | 100.0% | 46.0% |
| 3690560 | 2008.1.1.150 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › DUF7102 | 0.67 | 59.0 | 4.10e-01 | 100.0% | 35.8% |
| 4281432 | 2008.1.1.149 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PF30140 | 0.67 | 56.0 | 4.32e-01 | 96.5% | 48.9% |
| 3812221 | 2485.1.1.0 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like | 0.67 | 56.0 | 5.30e-01 | 94.7% | 77.1% |
| 3736568 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.67 | 56.0 | 4.13e-01 | 96.5% | 43.9% |
| 3785710 | 2485.1.1.34 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Rdx | 0.66 | 55.0 | 4.38e-01 | 94.7% | 80.8% |
| 4529871 | 2485.1.1.0 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like | 0.66 | 57.0 | 4.83e-01 | 96.5% | 73.7% |
| 3605916 | 2485.1.1.0 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like | 0.66 | 56.0 | 4.46e-01 | 98.2% | 56.9% |
| 4989444 | 2485.1.1.0 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like | 0.66 | 57.0 | 4.89e-01 | 96.5% | 62.2% |
| 4009572 | 298.4.1.0 ↗ | a+b two layers › FwdE/GAPDH domain-like › V-type ATPase subunit E › V-type ATPase subunit E | 0.66 | 54.0 | 4.69e-01 | 93.0% | 61.1% |
| 4202847 | 298.4.1.0 ↗ | a+b two layers › FwdE/GAPDH domain-like › V-type ATPase subunit E › V-type ATPase subunit E | 0.65 | 52.0 | 3.87e-01 | 89.5% | 38.0% |
| 4288654 | 2008.1.1.7 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › ERCC4 | 0.65 | 57.0 | 4.29e-01 | 100.0% | 42.1% |
| 4028887 | 109.1.1.11 ↗ | alpha superhelices › Repetitive alpha hairpins › Glutathione S-transferase (GST)-C › Glutathione S-transferase (GST)-C › Arc1p_N_like | 0.65 | 52.0 | 3.79e-01 | 93.0% | 55.4% |
| 3408740 | 2485.1.1.34 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Rdx | 0.64 | 54.0 | 4.62e-01 | 96.5% | 93.7% |
| 3981522 | 298.4.1.0 ↗ | a+b two layers › FwdE/GAPDH domain-like › V-type ATPase subunit E › V-type ATPase subunit E | 0.64 | 53.0 | 4.29e-01 | 93.0% | 50.0% |
| 5049320 | 298.4.1.0 ↗ | a+b two layers › FwdE/GAPDH domain-like › V-type ATPase subunit E › V-type ATPase subunit E | 0.64 | 51.0 | 3.60e-01 | 89.5% | 31.9% |
| 4052619 | 298.4.1.0 ↗ | a+b two layers › FwdE/GAPDH domain-like › V-type ATPase subunit E › V-type ATPase subunit E | 0.64 | 51.0 | 3.62e-01 | 91.2% | 29.5% |
| 3982265 | 298.4.1.0 ↗ | a+b two layers › FwdE/GAPDH domain-like › V-type ATPase subunit E › V-type ATPase subunit E | 0.64 | 52.0 | 4.46e-01 | 93.0% | 58.9% |
| 5069284 | 314.1.1.2 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_2b | 0.63 | 52.0 | 3.32e-01 | 94.7% | 29.0% |
| 5011716 | 2485.1.1.34 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Rdx | 0.62 | 50.0 | 4.71e-01 | 96.5% | 85.3% |
| 5049458 | 314.1.1.2 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_2b | 0.62 | 50.0 | 3.32e-01 | 93.0% | 38.5% |
| 3236789 | 2485.1.1.3 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Glutaredoxin | 0.62 | 49.0 | 4.13e-01 | 89.5% | 72.0% |
| 4960290 | 1.1.2.16 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › MacB_PCD | 0.62 | 46.0 | 3.82e-01 | 82.5% | 52.4% |
| 5011378 | 2485.1.1.0 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like | 0.61 | 49.0 | 4.67e-01 | 93.0% | 78.6% |
| 4933257 | 314.1.1.2 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_2b | 0.60 | 48.0 | 3.05e-01 | 93.0% | 26.7% |
| 3970034 | 2485.1.1.0 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like | 0.60 | 48.0 | 3.55e-01 | 91.2% | 61.9% |
| 5046839 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.59 | 45.0 | 3.61e-01 | 84.2% | 56.7% |
| 4932622 | 3008.1.1.0 ↗ | a+b three layers › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases | 0.59 | 43.0 | 3.94e-01 | 82.5% | 58.7% |
| 5006157 | 109.2.1.22 ↗ | alpha superhelices › Repetitive alpha hairpins › alpha/alpha toroid › alpha/alpha toroid › GlcNAc_2-epim | 0.59 | 47.0 | 2.92e-01 | 96.5% | 24.3% |
| 3788651 | 314.1.1.12 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › LplA-B_cat | 0.57 | 44.0 | 3.02e-01 | 91.2% | 59.6% |
| 4803218 | 563.1.1.1 ↗ | alpha bundles › ATPD N-terminal domain-like › N-terminal domain of the delta subunit of the F1F0-ATP synthase › N-terminal domain of the delta subunit of the F1F0-ATP synthase › OSCP | 0.55 | 45.0 | 3.36e-01 | 94.7% | 41.6% |
| 4933752 | 2487.2.1.1 ↗ | a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › FumA C-terminal domain-like › FumA C-terminal domain-like › Fumerase_C | 0.55 | 40.0 | 2.86e-01 | 82.5% | 77.4% |
| 4888118 | 1.1.2.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb2_6 | 0.53 | 41.0 | 3.06e-01 | 87.7% | 81.2% |
| 5077957 | 2.1.1.42 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Rep_fac-A_C | 0.53 | 36.0 | 2.75e-01 | 91.2% | 30.8% |
| 3589480 | 2006.1.6.0 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like | 0.52 | 41.0 | 3.13e-01 | 87.7% | 82.8% |
| 4675977 | 7502.1.1.0 ↗ | a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS | 0.52 | 42.0 | 3.95e-01 | 94.7% | 92.0% |
| 3481699 | 7587.1.1.1 ↗ | a/b three-layered sandwiches › Rossmann-like domain in carbohydrate phosphatases › Rossmann-like domain in carbohydrate phosphatases › Rossmann-like domain in carbohydrate phosphatases › Inositol_P | 0.52 | 42.0 | 3.11e-01 | 94.7% | 34.9% |
| 3365967 | 301.7.1.0 ↗ | a+b three layers › Bacillus chorismate mutase-like › YjgF-like › YjgF-like | 0.52 | 37.0 | 3.19e-01 | 82.5% | 94.5% |
| 4382195 | 247.1.1.31 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B_4, Anti-Pycsar_Apyc1 | 0.50 | 39.0 | 2.52e-01 | 89.5% | 49.7% |