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BML_08042016_6_5m_scaffold_18_prodigal-single.1__X__X__00186
Bact-VirBML_08042016_6_5m_scaffold_18_prodigal-single.1__X__X__00186
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 5-154
Domain cluster:
rep: pre3_saliva_scaffold_7_prodigal-single.1__X__X__00179__D7-149
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF18143.7 best | HAD_SAK_2 | 40.1 | 6.30e-10 | 80.0% | 81.3% |
CATH (43)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3cnhA01 | 3.40.50.1000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like | 0.73 | 59.0 | 6.28e-01 | 98.0% | 95.5% |
| 3slrA02 | 3.40.50.1000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like | 0.69 | 63.0 | 6.25e-01 | 100.0% | 96.9% |
| 3k1zA01 | 3.40.50.1000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like | 0.68 | 63.0 | 6.22e-01 | 98.7% | 99.4% |
| 1u7pD00 | 3.40.50.1000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like | 0.68 | 62.0 | 6.12e-01 | 99.3% | 96.3% |
| 1duvG01 | 3.40.50.1370 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Aspartate/ornithine carbamoyltransferase | 0.67 | 46.0 | 4.66e-01 | 98.7% | 69.3% |
| 2iyeA01 | 3.40.50.1000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like | 0.67 | 54.0 | 5.37e-01 | 97.3% | 82.2% |
| 3mc1A01 | 3.40.50.1000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like | 0.66 | 59.0 | 5.97e-01 | 96.7% | 97.3% |
| 2p9jB00 | 3.40.50.1000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like | 0.65 | 59.0 | 5.77e-01 | 98.0% | 93.2% |
| 3u7eB01 | 3.40.50.1000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like | 0.65 | 55.0 | 5.06e-01 | 92.0% | 84.2% |
| 4ex6A01 | 3.40.50.1000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like | 0.65 | 58.0 | 5.79e-01 | 96.7% | 97.4% |
| 3h05B00 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.64 | 49.0 | 4.81e-01 | 90.0% | 74.2% |
| 4uw9A01 | 3.40.50.1000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like | 0.63 | 56.0 | 5.70e-01 | 99.3% | 99.3% |
| 1te2A01 | 3.40.50.1000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like | 0.63 | 55.0 | 5.65e-01 | 96.7% | 97.3% |
| 6f2xA01 | 3.40.50.1000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like | 0.63 | 56.0 | 5.66e-01 | 97.3% | 96.7% |
| 3kbbA01 | 3.40.50.1000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like | 0.62 | 55.0 | 5.62e-01 | 97.3% | 99.3% |
| 3loqA02 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.62 | 48.0 | 5.15e-01 | 88.7% | 94.6% |
| 4hgnB00 | 3.40.50.1000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like | 0.62 | 55.0 | 5.42e-01 | 98.0% | 92.1% |
| 2n3zA00 | 3.40.50.11230 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.62 | 36.0 | 4.28e-01 | 97.3% | 84.8% |
| 1j09A01 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.62 | 47.0 | 5.13e-01 | 88.0% | 98.3% |
| 3l49A01 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.60 | 44.0 | 4.75e-01 | 98.7% | 90.7% |
| 1r6uA01 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.59 | 49.0 | 4.09e-01 | 88.0% | 70.9% |
| 4ry8A01 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.59 | 44.0 | 4.52e-01 | 99.3% | 80.4% |
| 3aiiA01 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.58 | 50.0 | 3.96e-01 | 92.0% | 89.1% |
| 2l82A00 | 3.40.50.11230 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.58 | 52.0 | 5.15e-01 | 99.3% | 92.6% |
| 1efaA02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.58 | 42.0 | 4.55e-01 | 98.7% | 91.3% |
| 2nx2A00 | 3.40.50.450 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.58 | 48.0 | 4.61e-01 | 90.7% | 96.6% |
| 1pswA01 | 3.40.50.2000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; | 0.57 | 47.0 | 4.84e-01 | 96.7% | 93.0% |
| 4ncbA05 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.57 | 42.0 | 4.29e-01 | 100.0% | 78.2% |
| 6xehA01 | 3.40.50.11230 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.57 | 41.0 | 4.57e-01 | 98.7% | 99.1% |
| 3mt0A00 | 3.40.50.12370 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.57 | 51.0 | 4.19e-01 | 99.3% | 91.5% |
| 5izdA01 | 3.40.605.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 | 0.56 | 50.0 | 4.07e-01 | 98.7% | 82.0% |
| 3bilA02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.56 | 47.0 | 4.92e-01 | 91.3% | 100.0% |
| 3olqA00 | 3.40.50.12370 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.55 | 50.0 | 3.98e-01 | 99.3% | 94.4% |
| 3tixB03 | 3.40.50.11490 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.55 | 49.0 | 4.92e-01 | 97.3% | 96.6% |
| 3pqaB01 | 3.40.605.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 | 0.55 | 49.0 | 4.03e-01 | 98.7% | 85.3% |
| 3iteB01 | 3.40.50.12780 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ANL, N-terminal domain | 0.54 | 44.0 | 3.25e-01 | 87.3% | 38.9% |
| 4chgA00 | 3.40.50.1010 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 5'-nuclease | 0.53 | 43.0 | 4.50e-01 | 85.3% | 98.5% |
| 4i3vA02 | 3.40.309.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 2 › Aldehyde Dehydrogenase; Chain A, domain 2 | 0.52 | 47.0 | 4.31e-01 | 99.3% | 100.0% |
| 2mr5A00 | 3.40.50.11230 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.52 | 41.0 | 4.33e-01 | 99.3% | 92.6% |
| 4gbmA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.52 | 46.0 | 3.80e-01 | 98.7% | 73.1% |
| 1mzhA00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.52 | 42.0 | 3.76e-01 | 88.7% | 91.1% |
| 1f2dA01 | 3.40.50.1100 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.51 | 37.0 | 3.30e-01 | 74.7% | 78.5% |
| 3ctzA02 | 3.40.350.10 | Alpha Beta › 3-Layer(aba) Sandwich › Creatine Amidinohydrolase; Chain A, domain 1 › Creatinase/prolidase N-terminal domain | 0.51 | 39.0 | 3.86e-01 | 92.0% | 75.6% |
ECOD (44)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3584528 | 2006.1.1.33 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › HAD_SAK_2 | 0.79 | 75.0 | 7.17e-01 | 100.0% | 91.2% |
| 5053451 | 2006.1.1.1 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase | 0.69 | 61.0 | 5.37e-01 | 98.7% | 66.2% |
| 135830 | 2006.1.1.13 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Acid_PPase | 0.69 | 64.0 | 6.13e-01 | 100.0% | 91.2% |
| 3426575 | 2006.1.1.1 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase | 0.68 | 59.0 | 5.43e-01 | 98.7% | 72.3% |
| 3947532 | 2005.1.1.0 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains | 0.68 | 51.0 | 5.57e-01 | 87.3% | 96.7% |
| 3971352 | 2006.1.1.18 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › HAD_2 | 0.68 | 60.0 | 5.33e-01 | 96.0% | 98.1% |
| 3369114 | 2006.1.1.1 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase | 0.68 | 60.0 | 5.20e-01 | 98.7% | 64.1% |
| 3187897 | 2006.1.1.0 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like | 0.68 | 60.0 | 4.62e-01 | 97.3% | 99.7% |
| 3819806 | 2006.1.1.1 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase | 0.68 | 58.0 | 5.12e-01 | 98.7% | 64.8% |
| 3604272 | 2006.1.1.1 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase | 0.67 | 59.0 | 5.93e-01 | 100.0% | 94.0% |
| 4951614 | 2006.1.1.1 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase | 0.67 | 58.0 | 5.91e-01 | 100.0% | 95.9% |
| 5009664 | 2006.1.1.0 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like | 0.67 | 59.0 | 5.78e-01 | 96.0% | 99.4% |
| 4974742 | 2006.1.1.1 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase | 0.66 | 59.0 | 5.30e-01 | 95.3% | 96.6% |
| 5026712 | 2006.1.1.18 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › HAD_2 | 0.66 | 60.0 | 5.27e-01 | 98.0% | 100.0% |
| 167625 | 2006.1.1.44 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase, Hydrolase_like | 0.66 | 61.0 | 5.52e-01 | 99.3% | 97.5% |
| 4995838 | 2006.1.1.18 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › HAD_2 | 0.66 | 60.0 | 5.20e-01 | 98.0% | 96.9% |
| 5038806 | 2006.1.1.1 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase | 0.66 | 58.0 | 5.13e-01 | 95.3% | 96.7% |
| 3400516 | 2006.1.1.12 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › PNK3P | 0.63 | 55.0 | 5.00e-01 | 94.0% | 84.0% |
| None | — | 0.63 | 56.0 | 5.34e-01 | 98.0% | 84.4% | |
| 5062673 | 2005.1.1.3 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Usp | 0.62 | 46.0 | 5.11e-01 | 92.0% | 99.1% |
| 5059592 | 2005.1.1.0 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains | 0.62 | 48.0 | 5.17e-01 | 90.7% | 95.4% |
| 4931052 | 2005.1.1.0 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains | 0.62 | 50.0 | 5.26e-01 | 85.3% | 98.5% |
| 4260563 | 2005.1.1.5 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1c | 0.61 | 52.0 | 4.07e-01 | 92.0% | 89.2% |
| 4165889 | 2005.1.1.0 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains | 0.60 | 52.0 | 3.69e-01 | 94.0% | 66.2% |
| None | — | 0.59 | 52.0 | 3.66e-01 | 94.0% | 66.2% | |
| 3552020 | 2005.1.1.5 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1c | 0.59 | 48.0 | 4.09e-01 | 86.7% | 90.8% |
| 4088260 | 2005.1.1.5 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1c | 0.59 | 51.0 | 3.93e-01 | 94.0% | 82.6% |
| 4318327 | 2007.1.4.2 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Phosphofructokinase N-terminal domain › DAGK_cat | 0.59 | 44.0 | 4.86e-01 | 99.3% | 98.3% |
| 5035273 | 2007.12.1.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Beta-D-glucan exohydrolase, C-terminal domain › Beta-D-glucan exohydrolase, C-terminal domain | 0.59 | 43.0 | 4.50e-01 | 98.0% | 81.4% |
| 4946736 | 2005.1.1.5 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1c | 0.59 | 48.0 | 4.09e-01 | 87.3% | 90.4% |
| 4536750 | 101.8.1.5 ↗ | alpha arrays › HTH › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › tRNA-synt_1c | 0.59 | 51.0 | 3.70e-01 | 94.7% | 64.9% |
| 3233812 | 2006.1.4.9 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › RNase_Zc3h12a | 0.59 | 53.0 | 4.62e-01 | 100.0% | 71.7% |
| 4199049 | 101.8.1.5 ↗ | alpha arrays › HTH › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › tRNA-synt_1c | 0.58 | 51.0 | 3.68e-01 | 94.7% | 66.7% |
| 3924381 | 2006.1.4.9 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › RNase_Zc3h12a | 0.58 | 52.0 | 4.62e-01 | 100.0% | 74.5% |
| 3953883 | 2005.1.1.3 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Usp | 0.58 | 45.0 | 4.77e-01 | 88.7% | 92.6% |
| 3949507 | 7512.1.1.30 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_4 | 0.57 | 51.0 | 4.36e-01 | 100.0% | 86.4% |
| 5004763 | 7563.1.1.4 ↗ | a/b three-layered sandwiches › MCP/YpsA-related › MCP/YpsA-related › MCP/YpsA-related › YpsA | 0.57 | 46.0 | 4.61e-01 | 86.0% | 100.0% |
| 5010015 | 2006.1.4.0 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like | 0.56 | 45.0 | 4.29e-01 | 90.0% | 72.0% |
| 3407204 | 2007.1.16.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Iron-sulphur enzyme Dph2 | 0.56 | 41.0 | 4.54e-01 | 94.7% | 100.0% |
| 4998552 | 7512.1.1.30 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_4 | 0.55 | 50.0 | 4.48e-01 | 100.0% | 96.7% |
| 3363299 | 2484.3.1.4 ↗ | mixed a+b and a/b › Ribonuclease H-like › Creatinase/prolidase N-terminal domain › Creatinase/prolidase N-terminal domain › Creatinase_N_2 | 0.53 | 39.0 | 3.97e-01 | 92.7% | 79.3% |
| 3404547 | 2004.1.1.19 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Ras | 0.52 | 47.0 | 4.14e-01 | 100.0% | 74.2% |
| 3552854 | 2484.3.1.4 ↗ | mixed a+b and a/b › Ribonuclease H-like › Creatinase/prolidase N-terminal domain › Creatinase/prolidase N-terminal domain › Creatinase_N_2 | 0.50 | 39.0 | 3.90e-01 | 92.0% | 78.1% |
| 4110813 | 7541.1.1.1 ↗ | a/b three-layered sandwiches › Molybdenum cofactor biosynthesis proteins › Molybdenum cofactor biosynthesis proteins › Molybdenum cofactor biosynthesis proteins › MoCF_biosynth | 0.50 | 46.0 | 4.31e-01 | 100.0% | 95.6% |