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BML_08042016_6_5m_scaffold_1_prodigal-single.1__X__X__00001
Bact-VirBML_08042016_6_5m_scaffold_1_prodigal-single.1__X__X__00001
Identity
- Kingdom:
- phage
Quality
90.7
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-41
Domain cluster:
representative
CATH (30)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2x8xX02 | 3.10.20.310 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac | 0.84 | 63.0 | 5.02e-01 | 100.0% | 42.1% |
| 1nv8B01 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.83 | 74.0 | 6.02e-01 | 100.0% | 56.3% |
| 3i4uA01 | 1.20.120.1080 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.78 | 64.0 | 4.69e-01 | 100.0% | 36.1% |
| 5uayA02 | 3.10.20.310 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac | 0.72 | 55.0 | 4.40e-01 | 100.0% | 41.0% |
| 4qkyA02 | 3.10.20.310 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac | 0.72 | 52.0 | 4.28e-01 | 100.0% | 41.9% |
| 4hteA03 | 1.10.167.30 | Mainly Alpha › Orthogonal Bundle › Regulator of G-protein Signalling 4; domain 2 › | 0.70 | 54.0 | 4.24e-01 | 97.4% | 41.2% |
| 3lcnB00 | 1.10.340.40 | Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Nuclear abundant poly(A) RNA-bind protein 2, N-terminal domain | 0.68 | 58.0 | 4.39e-01 | 100.0% | 68.0% |
| 3icxA01 | 1.10.287.660 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.66 | 49.0 | 4.07e-01 | 100.0% | 44.0% |
| 2bskB00 | 1.10.287.810 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Mitochondrial import inner membrane translocase subunit tim13 like domains | 0.65 | 54.0 | 4.66e-01 | 100.0% | 58.5% |
| 3gzfD00 | 1.10.150.420 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Coronavirus nonstructural protein 4 C-terminus | 0.65 | 44.0 | 3.42e-01 | 92.3% | 30.8% |
| 4h33A00 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.64 | 47.0 | 3.57e-01 | 100.0% | 34.1% |
| 2kwhA00 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.64 | 52.0 | 4.66e-01 | 97.4% | 64.3% |
| 1mdyA00 | 4.10.280.10 | Few Secondary Structures › Irregular › MYOD Basic-Helix-Loop-Helix Domain, subunit B › Helix-loop-helix DNA-binding domain | 0.64 | 41.0 | 3.45e-01 | 87.2% | 38.2% |
| 2qg3A00 | 3.30.1960.10 | Alpha Beta › 2-Layer Sandwich › SSo0622-like fold › tRNA wybutosine-synthesizing-like | 0.64 | 48.0 | 3.02e-01 | 100.0% | 16.5% |
| 2wt9A00 | 3.40.50.850 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Isochorismatase-like | 0.63 | 41.0 | 2.56e-01 | 87.2% | 12.1% |
| 4xrpA01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.62 | 52.0 | 3.62e-01 | 100.0% | 35.3% |
| 7febA03 | 3.40.50.12790 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › FHIPEP family, domain 4 | 0.62 | 54.0 | 4.12e-01 | 100.0% | 46.7% |
| 2xheA04 | 1.25.40.60 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.62 | 48.0 | 3.35e-01 | 84.6% | 44.9% |
| 1uajA02 | 1.10.1270.20 | Mainly Alpha › Orthogonal Bundle › Trp Operon Repressor; Chain A › tRNA(m1g37)methyltransferase, domain 2 | 0.61 | 49.0 | 3.99e-01 | 89.7% | 97.3% |
| 5c9eB01 | 1.20.1280.80 | Mainly Alpha › Up-down Bundle › Monooxygenase › | 0.60 | 46.0 | 3.66e-01 | 97.4% | 39.1% |
| 3lyuA01 | 3.40.50.80 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleotide-binding domain of ferredoxin-NADP reductase (FNR) module | 0.60 | 53.0 | 3.80e-01 | 100.0% | 74.1% |
| 2wvlB00 | 3.90.550.10 | Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 0.58 | 46.0 | 2.72e-01 | 97.4% | 10.5% |
| 2blfB01 | 1.10.760.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome Bc1 Complex; Chain D, domain 2 › Cytochrome c-like domain | 0.57 | 47.0 | 4.09e-01 | 94.9% | 58.7% |
| 4qjfB01 | 6.10.140.10 | Special › Helix non-globular › Helix Hairpins › | 0.57 | 47.0 | 4.26e-01 | 94.9% | 70.4% |
| 3f1iS00 | 1.20.5.1940 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.57 | 44.0 | 3.58e-01 | 87.2% | 46.8% |
| 4f7nB01 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.57 | 48.0 | 3.27e-01 | 97.4% | 27.2% |
| 1v5eA02 | 3.40.50.1220 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › TPP-binding domain | 0.55 | 48.0 | 3.13e-01 | 97.4% | 64.2% |
| 7prrB01 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.54 | 43.0 | 2.87e-01 | 100.0% | 21.9% |
| 3mgdB00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.53 | 40.0 | 2.73e-01 | 97.4% | 21.1% |
| 1u5tB02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.52 | 44.0 | 3.63e-01 | 92.3% | 76.8% |
ECOD (20)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| None | — | 0.76 | 50.0 | 3.16e-01 | 82.1% | 13.8% | |
| 3734455 | 140.1.1.5 ↗ | alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon_1 | 0.75 | 47.0 | 2.98e-01 | 84.6% | 13.2% |
| 4027085 | 101.1.9.0 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain | 0.70 | 61.0 | 5.24e-01 | 100.0% | 61.9% |
| 4564509 | 101.1.9.8 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › IF2_N | 0.70 | 60.0 | 5.23e-01 | 100.0% | 65.0% |
| 3572526 | 386.1.1.377 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › DUF4662 | 0.69 | 53.0 | 4.86e-01 | 100.0% | 63.6% |
| 3246475 | 7579.1.1.89 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › COesterase, BD-FAE | 0.69 | 54.0 | 2.99e-01 | 100.0% | 6.3% |
| 3204295 | 103.1.1.11 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › UBA_3 | 0.68 | 55.0 | 4.51e-01 | 94.9% | 49.3% |
| 2923620 | 601.55.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › anti-complement domain of BBK32 › anti-complement domain of BBK32 | 0.67 | 53.0 | 3.71e-01 | 97.4% | 27.3% |
| 3226769 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.67 | 55.0 | 4.67e-01 | 100.0% | 54.3% |
| 4069267 | 140.1.1.5 ↗ | alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon_1 | 0.66 | 48.0 | 3.17e-01 | 97.4% | 19.4% |
| 4218568 | 101.1.1.463 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › PF31175 | 0.65 | 53.0 | 4.54e-01 | 97.4% | 56.9% |
| 5022700 | 140.1.1.5 ↗ | alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon_1 | 0.64 | 51.0 | 3.31e-01 | 94.9% | 19.4% |
| 4953831 | 140.1.1.5 ↗ | alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon_1 | 0.64 | 51.0 | 3.32e-01 | 94.9% | 19.4% |
| 4103475 | 140.1.1.0 ↗ | alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases | 0.63 | 49.0 | 3.21e-01 | 100.0% | 18.4% |
| 3581305 | 604.12.1.92 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › Meckelin | 0.61 | 50.0 | 3.22e-01 | 100.0% | 42.4% |
| 3285567 | 5069.1.1.17 ↗ | alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes › DUF6529 | 0.61 | 50.0 | 3.30e-01 | 97.4% | 78.2% |
| 4944942 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.61 | 47.0 | 3.89e-01 | 89.7% | 46.7% |
| None | — | 0.58 | 51.0 | 3.31e-01 | 100.0% | 51.8% | |
| None | — | 0.55 | 42.0 | 2.85e-01 | 94.9% | 20.6% | |
| 4945529 | 144.1.1.0 ↗ | alpha arrays › PGBD-like › PGBD-like › PGBD-like | 0.54 | 44.0 | 3.74e-01 | 92.3% | 61.5% |