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BML_08042016_6_5m_scaffold_2_prodigal-single.1__X__X__00050
Bact-VirBML_08042016_6_5m_scaffold_2_prodigal-single.1__X__X__00050
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 141-336
Domain cluster:
rep: hypothetical_protein_OtV5_111c__YP_001648198__Ostreococcus_tauri_virus_OtV5__1785753__DFULL
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01467.33 best | CTP_transf_like | 56.0 | 6.80e-15 | 84.7% | 99.2% |
CATH (70)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3h05B00 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.92 | 71.0 | 7.77e-01 | 100.0% | 93.9% |
| 4ymiB00 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.91 | 86.0 | 8.64e-01 | 100.0% | 97.0% |
| 2h29A00 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.90 | 82.0 | 8.37e-01 | 100.0% | 97.9% |
| 1kamA00 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.89 | 77.0 | 8.11e-01 | 100.0% | 97.2% |
| 1gzuA00 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.88 | 85.0 | 8.01e-01 | 100.0% | 91.2% |
| 4wsoA00 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.88 | 85.0 | 7.98e-01 | 100.0% | 96.0% |
| 1yumA00 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.86 | 83.0 | 8.08e-01 | 100.0% | 97.2% |
| 5lltA00 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.84 | 81.0 | 7.95e-01 | 100.0% | 96.1% |
| 1k4kB00 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.82 | 79.0 | 7.84e-01 | 100.0% | 97.5% |
| 3glvA00 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.78 | 49.0 | 6.07e-01 | 82.1% | 100.0% |
| 3elbA02 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.77 | 54.0 | 5.86e-01 | 89.8% | 84.8% |
| 2qjoA01 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.75 | 63.0 | 6.33e-01 | 100.0% | 86.2% |
| 1mrzA01 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.70 | 54.0 | 5.97e-01 | 95.4% | 100.0% |
| 1xmxA01 | 3.40.50.10770 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Hypothetical protein VC1899 like domain (Restriction endonuclease-like) | 0.68 | 48.0 | 5.55e-01 | 93.9% | 99.3% |
| 5tqjA00 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.68 | 38.0 | 4.68e-01 | 80.6% | 86.3% |
| 4gywA05 | 3.40.50.2000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; | 0.67 | 46.0 | 5.04e-01 | 80.6% | 83.9% |
| 1pswA01 | 3.40.50.2000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; | 0.67 | 43.0 | 4.89e-01 | 81.6% | 86.7% |
| 4qysA02 | 3.40.50.1100 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.66 | 33.0 | 4.33e-01 | 78.6% | 86.5% |
| 1jhdA01 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.66 | 62.0 | 6.15e-01 | 99.0% | 97.0% |
| 7ec2A01 | 3.40.50.2000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; | 0.63 | 39.0 | 4.41e-01 | 81.1% | 80.1% |
| 2l69A00 | 3.40.50.11230 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.62 | 37.0 | 4.32e-01 | 80.6% | 82.8% |
| 3oqiA00 | 3.40.50.11710 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Cyclodipeptide synthase | 0.62 | 48.0 | 4.62e-01 | 80.1% | 93.2% |
| 4zemA02 | 3.40.50.10470 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Translation initiation factor eif-2b; domain 2 | 0.61 | 44.0 | 4.78e-01 | 81.1% | 86.9% |
| 2xciA02 | 3.40.50.2000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; | 0.61 | 43.0 | 4.46e-01 | 81.6% | 75.9% |
| 4r27B00 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.60 | 49.0 | 3.92e-01 | 87.2% | 94.6% |
| 1rzuA02 | 3.40.50.2000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; | 0.60 | 42.0 | 4.17e-01 | 82.1% | 67.5% |
| 5jnmA01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.59 | 47.0 | 4.68e-01 | 98.5% | 80.3% |
| 4j1qA00 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.57 | 50.0 | 3.92e-01 | 93.9% | 51.1% |
| 4rxtA02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.57 | 41.0 | 4.47e-01 | 79.1% | 89.9% |
| 3brsA02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.57 | 38.0 | 4.40e-01 | 76.5% | 96.3% |
| 2x9qB00 | 3.40.50.11710 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Cyclodipeptide synthase | 0.57 | 44.0 | 4.24e-01 | 80.6% | 86.0% |
| 5k9xA00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.57 | 49.0 | 4.52e-01 | 94.4% | 95.0% |
| 1zemA00 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.56 | 50.0 | 4.53e-01 | 94.9% | 88.5% |
| 5izdA01 | 3.40.605.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 | 0.56 | 44.0 | 3.91e-01 | 81.6% | 77.8% |
| 4pysA02 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.56 | 45.0 | 3.62e-01 | 82.7% | 95.4% |
| 3b4yA00 | 3.20.20.30 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Luciferase-like domain | 0.56 | 43.0 | 3.64e-01 | 80.1% | 96.4% |
| 5bmoC00 | 3.40.50.10320 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › LmbE-like | 0.56 | 49.0 | 4.61e-01 | 94.9% | 85.1% |
| 3oidC00 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.56 | 49.0 | 4.56e-01 | 94.4% | 86.7% |
| 3tmaA02 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.56 | 42.0 | 4.43e-01 | 78.1% | 89.8% |
| 1uanA00 | 3.40.50.10320 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › LmbE-like | 0.56 | 47.0 | 4.57e-01 | 99.0% | 80.9% |
| 3we7A00 | 3.40.50.10320 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › LmbE-like | 0.56 | 48.0 | 4.38e-01 | 93.9% | 76.4% |
| 1xr4B01 | 3.40.1080.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaconate Coenzyme A-transferase › Glutaconate Coenzyme A-transferase | 0.55 | 45.0 | 4.29e-01 | 86.7% | 76.3% |
| 6acsA00 | 3.40.1180.10 | Alpha Beta › 3-Layer(aba) Sandwich › Undecaprenyl pyrophosphate synthetase › Decaprenyl diphosphate synthase-like | 0.55 | 42.0 | 4.08e-01 | 79.6% | 89.3% |
| 1j24A00 | 3.40.50.10130 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.55 | 33.0 | 3.96e-01 | 82.1% | 86.5% |
| 5g4kA00 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.55 | 49.0 | 4.40e-01 | 94.4% | 82.2% |
| 3kksB00 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.54 | 32.0 | 3.60e-01 | 99.5% | 73.0% |
| 6hxqA01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.54 | 36.0 | 4.21e-01 | 82.1% | 100.0% |
| 4y9dA00 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.54 | 47.0 | 4.47e-01 | 94.4% | 82.1% |
| 1iz0A02 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.54 | 41.0 | 4.49e-01 | 95.4% | 100.0% |
| 1fuyB01 | 3.40.50.1100 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.54 | 37.0 | 4.06e-01 | 70.4% | 93.3% |
| 4i3vA01 | 3.40.605.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 | 0.54 | 42.0 | 3.75e-01 | 81.1% | 77.7% |
| 3ibtA01 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.53 | 42.0 | 4.26e-01 | 93.9% | 83.4% |
| 2j0wA01 | 3.40.1160.10 | Alpha Beta › 3-Layer(aba) Sandwich › Carbamate kinase › Acetylglutamate kinase-like | 0.53 | 40.0 | 4.00e-01 | 77.0% | 98.5% |
| 3f2vA00 | 3.40.50.360 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Flavodoxin domain | 0.53 | 41.0 | 4.34e-01 | 93.4% | 90.2% |
| 6fnuA00 | 3.20.20.220 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › | 0.53 | 47.0 | 4.07e-01 | 95.4% | 94.9% |
| 4mp8A02 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.52 | 40.0 | 4.28e-01 | 80.1% | 98.8% |
| 3aptA00 | 3.20.20.220 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › | 0.52 | 46.0 | 4.02e-01 | 94.9% | 94.9% |
| 1yh0A02 | 3.40.50.1370 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Aspartate/ornithine carbamoyltransferase | 0.52 | 39.0 | 4.17e-01 | 81.1% | 89.5% |
| 2aznA00 | 3.40.430.10 | Alpha Beta › 3-Layer(aba) Sandwich › Dihydrofolate Reductase, subunit A › Dihydrofolate Reductase, subunit A | 0.52 | 40.0 | 3.92e-01 | 81.1% | 77.2% |
| 2zj3A02 | 3.40.50.10490 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glucose-6-phosphate isomerase like protein; domain 1 | 0.52 | 36.0 | 4.02e-01 | 87.2% | 93.2% |
| 3thaB00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.52 | 44.0 | 4.16e-01 | 93.9% | 98.0% |
| 3ckjA00 | 3.90.550.10 | Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 0.51 | 41.0 | 3.59e-01 | 84.7% | 68.3% |
| 2yxoB00 | 3.20.20.140 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases | 0.51 | 40.0 | 3.64e-01 | 81.1% | 86.8% |
| 5kinC00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.51 | 44.0 | 4.09e-01 | 94.4% | 96.8% |
| 3e05B00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.51 | 42.0 | 4.24e-01 | 88.8% | 88.0% |
| 4yheA00 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.51 | 41.0 | 3.39e-01 | 87.8% | 86.1% |
| 2hk0A00 | 3.20.20.150 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Divalent-metal-dependent TIM barrel enzymes | 0.51 | 39.0 | 3.47e-01 | 80.6% | 85.4% |
| 2ekcB00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.51 | 44.0 | 4.02e-01 | 93.4% | 96.9% |
| 7oufB01 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.50 | 31.0 | 3.47e-01 | 98.5% | 77.9% |
| 3d3aA01 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.50 | 44.0 | 3.93e-01 | 94.9% | 93.5% |
ECOD (89)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4155711 | 2005.1.1.13 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › CTP_transf_like | 0.95 | 87.0 | 8.68e-01 | 100.0% | 92.0% |
| 4095449 | 2005.1.1.13 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › CTP_transf_like | 0.94 | 86.0 | 8.80e-01 | 100.0% | 96.8% |
| 4067381 | 2005.1.1.13 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › CTP_transf_like | 0.94 | 82.0 | 8.63e-01 | 99.0% | 97.8% |
| 4160184 | 2005.1.1.13 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › CTP_transf_like | 0.93 | 85.0 | 8.67e-01 | 99.5% | 96.3% |
| 4067713 | 2005.1.1.13 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › CTP_transf_like | 0.93 | 87.0 | 8.90e-01 | 99.5% | 98.9% |
| 4235307 | 2005.1.1.13 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › CTP_transf_like | 0.92 | 82.0 | 8.34e-01 | 98.0% | 93.7% |
| 361566 | 2005.1.1.13 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › CTP_transf_like | 0.92 | 71.0 | 7.77e-01 | 100.0% | 93.9% |
| 4351028 | 2005.1.1.13 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › CTP_transf_like | 0.92 | 90.0 | 8.85e-01 | 100.0% | 98.0% |
| 4683526 | 2005.1.1.13 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › CTP_transf_like | 0.92 | 84.0 | 8.54e-01 | 100.0% | 96.8% |
| 4530472 | 2005.1.1.13 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › CTP_transf_like | 0.92 | 83.0 | 8.60e-01 | 99.5% | 98.9% |
| 4640339 | 2005.1.1.13 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › CTP_transf_like | 0.92 | 89.0 | 8.90e-01 | 100.0% | 98.0% |
| 4666973 | 2005.1.1.0 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains | 0.92 | 84.0 | 8.62e-01 | 100.0% | 97.9% |
| 4421283 | 2005.1.1.13 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › CTP_transf_like | 0.92 | 89.0 | 8.55e-01 | 99.5% | 96.3% |
| 4043476 | 2005.1.1.13 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › CTP_transf_like | 0.91 | 86.0 | 8.72e-01 | 99.5% | 98.4% |
| 1492191 | 2005.1.1.13 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › CTP_transf_like | 0.91 | 84.0 | 8.59e-01 | 96.9% | 97.9% |
| 4224992 | 2005.1.1.13 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › CTP_transf_like | 0.91 | 87.0 | 8.75e-01 | 100.0% | 98.5% |
| 4406262 | 2005.1.1.13 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › CTP_transf_like | 0.91 | 82.0 | 8.40e-01 | 100.0% | 96.8% |
| 4134257 | 2005.1.1.13 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › CTP_transf_like | 0.91 | 88.0 | 8.71e-01 | 100.0% | 96.1% |
| 4670342 | 2005.1.1.13 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › CTP_transf_like | 0.91 | 85.0 | 8.59e-01 | 100.0% | 97.4% |
| 4111371 | 2005.1.1.13 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › CTP_transf_like | 0.91 | 88.0 | 8.70e-01 | 100.0% | 97.6% |
| 3285824 | 2005.1.1.13 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › CTP_transf_like | 0.91 | 88.0 | 8.66e-01 | 100.0% | 95.1% |
| 4211214 | 2005.1.1.13 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › CTP_transf_like | 0.91 | 81.0 | 8.36e-01 | 99.0% | 97.3% |
| 4570447 | 2005.1.1.13 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › CTP_transf_like | 0.90 | 84.0 | 8.49e-01 | 100.0% | 97.9% |
| 4320565 | 2005.1.1.13 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › CTP_transf_like | 0.90 | 84.0 | 8.43e-01 | 99.5% | 96.4% |
| 4114555 | 2005.1.1.13 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › CTP_transf_like | 0.90 | 84.0 | 8.53e-01 | 99.5% | 98.9% |
| 4247510 | 2005.1.1.13 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › CTP_transf_like | 0.90 | 85.0 | 8.48e-01 | 100.0% | 96.0% |
| 4077790 | 2005.1.1.13 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › CTP_transf_like | 0.89 | 86.0 | 8.33e-01 | 99.5% | 97.2% |
| 4196458 | 2005.1.1.13 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › CTP_transf_like | 0.89 | 86.0 | 8.32e-01 | 99.5% | 97.2% |
| 3964859 | 2005.1.1.13 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › CTP_transf_like | 0.89 | 86.0 | 8.62e-01 | 100.0% | 98.0% |
| 4558910 | 2005.1.1.13 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › CTP_transf_like | 0.89 | 86.0 | 8.37e-01 | 100.0% | 100.0% |
| 4242301 | 2005.1.1.13 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › CTP_transf_like | 0.89 | 86.0 | 8.46e-01 | 99.5% | 97.5% |
| 4035943 | 2005.1.1.13 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › CTP_transf_like | 0.89 | 83.0 | 8.39e-01 | 100.0% | 97.4% |
| 4013604 | 2005.1.1.0 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains | 0.89 | 86.0 | 7.63e-01 | 100.0% | 85.4% |
| 3386991 | 2005.1.1.13 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › CTP_transf_like | 0.88 | 76.0 | 7.93e-01 | 99.5% | 96.7% |
| 3707514 | 2005.1.1.13 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › CTP_transf_like | 0.88 | 85.0 | 7.58e-01 | 100.0% | 90.0% |
| 4237400 | 2005.1.1.13 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › CTP_transf_like | 0.88 | 74.0 | 7.94e-01 | 87.2% | 99.4% |
| 4253527 | 2005.1.1.13 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › CTP_transf_like | 0.88 | 85.0 | 8.43e-01 | 99.5% | 98.0% |
| 3966385 | 2005.1.1.0 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains | 0.88 | 85.0 | 8.30e-01 | 100.0% | 98.1% |
| 4191597 | 2005.1.1.13 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › CTP_transf_like | 0.88 | 85.0 | 8.23e-01 | 100.0% | 96.3% |
| 4484330 | 2005.1.1.13 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › CTP_transf_like | 0.88 | 85.0 | 8.20e-01 | 100.0% | 97.2% |
| 4407653 | 2005.1.1.13 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › CTP_transf_like | 0.88 | 85.0 | 8.19e-01 | 100.0% | 97.7% |
| 1407134 | 2005.1.1.13 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › CTP_transf_like | 0.88 | 85.0 | 7.98e-01 | 100.0% | 96.0% |
| 3398792 | 2005.1.1.13 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › CTP_transf_like | 0.88 | 85.0 | 7.74e-01 | 100.0% | 96.3% |
| 3599462 | 2005.1.1.13 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › CTP_transf_like | 0.88 | 84.0 | 7.16e-01 | 100.0% | 87.8% |
| 4158059 | 2005.1.1.13 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › CTP_transf_like | 0.88 | 84.0 | 8.14e-01 | 99.5% | 98.1% |
| 4363066 | 2005.1.1.13 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › CTP_transf_like | 0.88 | 85.0 | 8.44e-01 | 100.0% | 99.0% |
| 4277545 | 2005.1.1.13 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › CTP_transf_like | 0.87 | 84.0 | 8.22e-01 | 100.0% | 98.6% |
| 4539105 | 2005.1.1.13 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › CTP_transf_like | 0.87 | 84.0 | 8.18e-01 | 99.5% | 97.6% |
| 4517155 | 2005.1.1.13 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › CTP_transf_like | 0.87 | 84.0 | 8.24e-01 | 100.0% | 98.6% |
| 3609205 | 2005.1.1.13 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › CTP_transf_like | 0.87 | 84.0 | 7.36e-01 | 100.0% | 91.1% |
| 4260290 | 2005.1.1.13 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › CTP_transf_like | 0.87 | 84.0 | 8.17e-01 | 100.0% | 98.1% |
| 4272043 | 2005.1.1.13 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › CTP_transf_like | 0.86 | 83.0 | 7.95e-01 | 100.0% | 96.8% |
| 3928483 | 2005.1.1.13 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › CTP_transf_like | 0.86 | 83.0 | 7.93e-01 | 100.0% | 96.8% |
| 4669379 | 2005.1.1.13 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › CTP_transf_like | 0.86 | 83.0 | 7.81e-01 | 99.5% | 91.1% |
| 4615884 | 2005.1.1.13 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › CTP_transf_like | 0.86 | 83.0 | 7.98e-01 | 100.0% | 95.8% |
| 4613788 | 2005.1.1.13 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › CTP_transf_like | 0.85 | 82.0 | 8.21e-01 | 100.0% | 100.0% |
| 4575016 | 2005.1.1.13 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › CTP_transf_like | 0.84 | 81.0 | 8.03e-01 | 100.0% | 97.5% |
| 4023752 | 2005.1.1.13 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › CTP_transf_like | 0.84 | 80.0 | 7.93e-01 | 100.0% | 96.6% |
| 4157808 | 2005.1.1.13 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › CTP_transf_like | 0.83 | 79.0 | 7.88e-01 | 100.0% | 97.5% |
| 4417579 | 2005.1.1.13 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › CTP_transf_like | 0.82 | 74.0 | 7.54e-01 | 93.4% | 100.0% |
| 4503157 | 2005.1.1.13 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › CTP_transf_like | 0.81 | 78.0 | 7.58e-01 | 100.0% | 92.9% |
| 4944570 | 2005.1.1.0 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains | 0.80 | 64.0 | 6.88e-01 | 99.5% | 94.1% |
| 3610013 | 2005.1.1.0 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains | 0.80 | 61.0 | 6.86e-01 | 83.7% | 100.0% |
| 3804609 | 2005.1.1.13 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › CTP_transf_like | 0.75 | 65.0 | 6.39e-01 | 88.8% | 84.9% |
| 3497045 | 2005.1.1.0 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains | 0.75 | 53.0 | 5.46e-01 | 90.3% | 74.7% |
| 3406067 | 2005.1.1.13 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › CTP_transf_like | 0.75 | 53.0 | 5.33e-01 | 90.3% | 71.0% |
| 4991997 | 2005.1.1.13 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › CTP_transf_like | 0.72 | 51.0 | 5.94e-01 | 85.7% | 100.0% |
| 4040887 | 2005.1.1.25 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › HIGH_NTase1 | 0.69 | 65.0 | 5.54e-01 | 99.5% | 86.0% |
| 4369422 | 2005.1.1.25 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › HIGH_NTase1 | 0.69 | 64.0 | 4.97e-01 | 99.5% | 57.8% |
| None | — | 0.68 | 64.0 | 5.02e-01 | 99.5% | 60.0% | |
| None | — | 0.68 | 64.0 | 6.07e-01 | 100.0% | 98.3% | |
| 4208975 | 2005.1.1.25 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › HIGH_NTase1 | 0.68 | 64.0 | 4.99e-01 | 99.5% | 59.0% |
| None | — | 0.68 | 64.0 | 4.94e-01 | 99.5% | 58.0% | |
| 4290022 | 2005.1.1.25 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › HIGH_NTase1 | 0.67 | 63.0 | 5.82e-01 | 99.5% | 92.9% |
| 4952928 | 2005.1.1.13 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › CTP_transf_like | 0.67 | 62.0 | 6.13e-01 | 100.0% | 97.1% |
| 3740411 | 2005.1.1.0 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains | 0.66 | 47.0 | 4.66e-01 | 90.8% | 69.8% |
| 4646065 | 102.8.1.0 ↗ | alpha arrays › HhH/H2TH › UPF0348 protein MJ0951 C-terminal domain › UPF0348 protein MJ0951 C-terminal domain | 0.65 | 61.0 | 5.50e-01 | 100.0% | 83.1% |
| 4388317 | 2005.1.1.25 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › HIGH_NTase1 | 0.65 | 61.0 | 5.19e-01 | 99.5% | 75.7% |
| 4953587 | 2005.1.1.126 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › HIGH_NTase1_ass | 0.65 | 61.0 | 5.41e-01 | 100.0% | 77.8% |
| 3948435 | 7512.1.1.3 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glycos_transf_1 | 0.62 | 43.0 | 4.38e-01 | 81.6% | 70.8% |
| 5079075 | 7592.1.1.0 ↗ | a/b three-layered sandwiches › CARF (CRISPR-associated Rossmann fold) domains › CARF (CRISPR-associated Rossmann fold) domains › CARF (CRISPR-associated Rossmann fold) domains | 0.61 | 47.0 | 4.97e-01 | 79.6% | 99.4% |
| 3602729 | 2002.1.1.15 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Trp_syntA | 0.58 | 50.0 | 4.44e-01 | 93.4% | 92.5% |
| 5058237 | 2488.1.1.4 ↗ | a/b three-layered sandwiches › alpha/beta knot › alpha/beta knot › alpha/beta knot › Trm56 | 0.57 | 40.0 | 4.25e-01 | 80.1% | 80.6% |
| 3964553 | 2484.1.1.66 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_3 | 0.55 | 34.0 | 3.95e-01 | 100.0% | 84.3% |
| 3331622 | 2002.1.1.63 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_35 | 0.54 | 41.0 | 3.48e-01 | 78.1% | 88.5% |
| 4426006 | 7516.1.1.0 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases | 0.53 | 47.0 | 3.94e-01 | 96.4% | 88.1% |
| None | — | 0.52 | 47.0 | 3.94e-01 | 100.0% | 93.5% | |
| 3447244 | 2488.1.1.12 ↗ | a/b three-layered sandwiches › alpha/beta knot › alpha/beta knot › alpha/beta knot › Methyltrans_RNA | 0.52 | 40.0 | 4.20e-01 | 80.6% | 89.7% |
| 3939161 | 2002.1.1.0 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels | 0.51 | 45.0 | 3.56e-01 | 99.0% | 93.9% |
D2
medium
residues 1-140
Domain cluster:
rep: RTP_09252017_15_scaffold_29_prodigal-single.1__X__X__00355__D10-131
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF08299.18 best | Bac_DnaA_C | 41.0 | 2.20e-10 | 48.6% | 97.1% |
CATH (9)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1l8qA03 | 1.10.1750.10 | Mainly Alpha › Orthogonal Bundle › Chromosomal Replication Initiator Protein Dnaa; Chain: A; › DnaA protein, C-terminal DNA-binding domain | 0.85 | 58.0 | 6.65e-01 | 72.9% | 91.6% |
| 8ek4A01 | 1.20.120.20 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Apolipoprotein | 0.75 | 39.0 | 4.03e-01 | 90.7% | 53.4% |
| 3agtA00 | 1.20.120.50 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Hemerythrin-like | 0.67 | 28.0 | 2.91e-01 | 80.0% | 42.1% |
| 3edvB01 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.60 | 44.0 | 4.53e-01 | 76.4% | 95.6% |
| 3qa8A04 | 1.20.1270.250 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.53 | 40.0 | 3.38e-01 | 78.6% | 91.8% |
| 4l7aA00 | 3.40.390.70 | Alpha Beta › 3-Layer(aba) Sandwich › Collagenase (Catalytic Domain) › | 0.53 | 40.0 | 3.34e-01 | 80.0% | 52.9% |
| 1ngkB00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.53 | 38.0 | 3.95e-01 | 75.7% | 81.1% |
| 4o6yB00 | 1.20.120.1770 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.52 | 38.0 | 3.36e-01 | 75.7% | 93.4% |
| 1n83A00 | 1.10.565.10 | Mainly Alpha › Orthogonal Bundle › Retinoid X Receptor › Retinoid X Receptor | 0.51 | 40.0 | 3.27e-01 | 81.4% | 67.7% |
ECOD (21)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4051624 | 101.1.6.4 ↗ | alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C | 0.93 | 63.0 | 7.31e-01 | 70.0% | 92.4% |
| 4559046 | 101.1.6.4 ↗ | alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C | 0.90 | 64.0 | 7.41e-01 | 72.9% | 96.2% |
| 4604979 | 101.1.6.4 ↗ | alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C | 0.90 | 61.0 | 7.03e-01 | 70.0% | 92.3% |
| 4174198 | 101.1.6.4 ↗ | alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C | 0.89 | 61.0 | 7.25e-01 | 70.7% | 98.0% |
| 3385990 | 101.1.6.4 ↗ | alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C | 0.89 | 63.0 | 7.25e-01 | 72.9% | 96.2% |
| 4281674 | 101.1.6.4 ↗ | alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C | 0.88 | 63.0 | 7.29e-01 | 75.0% | 97.1% |
| 4606821 | 101.1.6.4 ↗ | alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C | 0.88 | 60.0 | 7.14e-01 | 71.4% | 98.0% |
| 4102935 | 101.1.6.4 ↗ | alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C | 0.88 | 60.0 | 6.90e-01 | 70.0% | 92.4% |
| 4197050 | 101.1.6.4 ↗ | alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C | 0.87 | 63.0 | 7.21e-01 | 74.3% | 98.1% |
| 4437729 | 101.1.6.4 ↗ | alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C | 0.86 | 58.0 | 6.78e-01 | 70.7% | 95.0% |
| 144712 | 101.1.6.4 ↗ | alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C | 0.85 | 57.0 | 6.53e-01 | 72.9% | 89.7% |
| 4346134 | 101.1.6.4 ↗ | alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C | 0.84 | 59.0 | 6.77e-01 | 72.1% | 96.2% |
| 4379676 | 101.1.6.4 ↗ | alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C | 0.84 | 61.0 | 7.07e-01 | 75.0% | 100.0% |
| 3552989 | 604.8.1.1 ↗ | alpha bundles › Spectrin repeat-like › Smac/diablo › Smac/diablo › Smac_DIABLO | 0.65 | 48.0 | 4.32e-01 | 75.0% | 83.2% |
| 5019699 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.54 | 46.0 | 4.10e-01 | 95.7% | 65.1% |
| 3914455 | 109.4.1.195 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_11 | 0.54 | 40.0 | 2.91e-01 | 75.7% | 39.2% |
| 3336125 | 603.1.1.99 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins › PF27021 | 0.52 | 41.0 | 3.82e-01 | 89.3% | 67.1% |
| 3452813 | 606.1.1.0 ↗ | alpha complex topology › Nop N-terminal domain › Nop N-terminal domain › Nop N-terminal domain | 0.51 | 40.0 | 4.20e-01 | 90.0% | 90.0% |
| 3516162 | 603.1.1.23 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins › Sec20 | 0.51 | 45.0 | 4.20e-01 | 94.3% | 91.8% |
| 4145667 | 3922.1.1.0 ↗ | alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 | 0.51 | 46.0 | 4.08e-01 | 100.0% | 68.7% |
| 3216493 | 101.1.10.1 ↗ | alpha arrays › HTH › HTH › Cyclin-like › Cyclin_N | 0.50 | 39.0 | 3.37e-01 | 82.1% | 85.2% |