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BML_08042016_6_5m_scaffold_2_prodigal-single.1__X__X__00095

Bact-Vir

BML_08042016_6_5m_scaffold_2_prodigal-single.1__X__X__00095

Identity

Kingdom:
phage

Quality

54.3 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-68
PDB
D2 high residues 263-353
PDB
Domain cluster: representative
CATH (45)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5jrcA00 1.20.58.2140 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.89 59.0 4.55e-01 72.5% 33.3%
1iq0A03 1.10.730.10 Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1 0.83 72.0 6.57e-01 91.2% 93.1%
1j5wA02 1.20.58.180 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Class II aaRS and biotin synthetases; domain 2 0.82 51.0 5.57e-01 71.4% 75.3%
3fnrA01 1.10.730.10 Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1 0.81 76.0 6.33e-01 100.0% 76.6%
1ileA03 1.10.730.10 Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1 0.78 71.0 5.51e-01 100.0% 59.2%
1qu3A04 1.10.730.10 Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1 0.77 70.0 5.89e-01 100.0% 77.3%
2csxA03 1.10.730.10 Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1 0.77 70.0 5.72e-01 100.0% 66.9%
3kflA03 1.10.730.10 Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1 0.76 69.0 5.54e-01 100.0% 62.3%
5j1gA00 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.76 53.0 3.90e-01 72.5% 39.5%
2d5bA03 1.10.730.10 Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1 0.76 69.0 5.61e-01 100.0% 64.0%
2yfaA02 1.20.1440.210 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 0.75 56.0 5.15e-01 78.0% 94.8%
1wkbA03 1.10.730.10 Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1 0.75 68.0 6.19e-01 100.0% 84.3%
2ra1A03 1.20.58.770 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.74 44.0 5.10e-01 72.5% 84.1%
1rqgA04 1.10.730.10 Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1 0.74 67.0 5.63e-01 100.0% 70.2%
1br0A00 1.20.58.70 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.73 50.0 4.61e-01 71.4% 79.2%
1owaA02 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.73 51.0 4.87e-01 72.5% 79.2%
3edvB01 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.72 50.0 4.39e-01 72.5% 62.5%
1yxrA01 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.72 48.0 5.16e-01 71.4% 83.8%
1nigA00 1.20.1200.10 Mainly Alpha › Up-down Bundle › Hypothetical Protein Ta1238; Chain: A; › Cobalamin adenosyltransferase-like 0.71 48.0 4.11e-01 70.3% 78.8%
3gw4A00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.71 40.0 3.15e-01 71.4% 26.0%
1xg2B00 1.20.140.40 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Invertase/pectin methylesterase inhibitor family protein 0.70 57.0 4.78e-01 86.8% 88.7%
6xssA01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.69 37.0 4.10e-01 72.5% 65.2%
1wn0A00 1.20.120.160 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HPT domain 0.67 49.0 4.38e-01 76.9% 97.7%
3gnlB02 1.10.287.1890 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.67 46.0 5.16e-01 75.8% 95.6%
6k9pB02 1.20.1300.20 Mainly Alpha › Up-down Bundle › 3 helical TM bundles of succinate and fumarate reductases › Peptidase C65 Otubain, subdomain 2 0.66 43.0 3.66e-01 71.4% 39.5%
1oe8A02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.66 46.0 4.15e-01 72.5% 58.9%
3sqiA01 1.10.150.540 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 0.65 38.0 3.77e-01 72.5% 54.5%
3mzkB03 1.20.58.940 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.64 32.0 3.63e-01 82.4% 60.0%
1rj1A00 1.20.140.40 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Invertase/pectin methylesterase inhibitor family protein 0.64 52.0 4.45e-01 90.1% 89.9%
2oocB00 1.20.120.160 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HPT domain 0.63 45.0 4.28e-01 73.6% 95.2%
4ip8A00 1.10.132.110 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Serum amyloid A protein 0.62 39.0 3.79e-01 73.6% 54.3%
5nl6A02 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.62 43.0 4.14e-01 72.5% 72.2%
5gj7A03 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.62 44.0 3.76e-01 74.7% 84.8%
3craA02 1.10.287.1080 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like 0.61 44.0 3.94e-01 80.2% 53.9%
3h3mA00 1.20.58.380 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Flagellar protein flit. 0.61 42.0 4.32e-01 72.5% 74.2%
3vprA02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.60 41.0 3.60e-01 71.4% 46.9%
1s70B02 1.25.40.20 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain 0.59 31.0 2.76e-01 73.6% 34.9%
3t6gB00 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.55 50.0 4.38e-01 98.9% 82.1%
2jaqA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.54 43.0 3.38e-01 84.6% 44.4%
3psfA02 1.10.10.650 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › RuvA domain 2-like 0.54 40.0 3.51e-01 80.2% 85.4%
1w36C06 1.10.10.990 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.54 33.0 3.60e-01 82.4% 76.4%
2hfiA00 1.20.120.440 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › YppE-like 0.53 47.0 4.30e-01 100.0% 91.9%
3ejbH02 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.52 44.0 3.25e-01 95.6% 63.0%
1z23A00 1.20.120.830 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Serine-rich domain 0.51 45.0 3.71e-01 97.8% 78.5%
4fwvA02 1.20.120.1680 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.50 35.0 3.12e-01 72.5% 91.8%
ECOD (47)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
None 0.83 74.0 5.70e-01 100.0% 45.8%
3706056 604.22.1.0 alpha bundles › Spectrin repeat-like › tubulin binding cofactor C N-terminal domain › tubulin binding cofactor C N-terminal domain 0.81 52.0 5.38e-01 71.4% 69.4%
5023839 109.10.1.1 alpha superhelices › Repetitive alpha hairpins › Translin › Translin › Translin 0.81 56.0 4.21e-01 72.5% 32.5%
3649945 604.12.1.70 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › FIGL1_N 0.80 53.0 5.25e-01 72.5% 65.3%
3730130 140.1.1.11 alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › DALR_1 0.79 74.0 5.54e-01 100.0% 56.1%
3481122 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.79 55.0 5.39e-01 72.5% 84.0%
3483993 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.77 53.0 5.11e-01 70.3% 83.0%
3496310 603.1.1.0 alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.77 54.0 4.88e-01 72.5% 72.5%
4400399 140.1.1.11 alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › DALR_1 0.75 67.0 6.10e-01 98.9% 95.8%
3371182 604.12.1.0 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.75 55.0 5.23e-01 76.9% 91.4%
3829016 604.12.1.0 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.74 55.0 4.90e-01 76.9% 78.4%
3497641 604.1.1.1 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin 0.74 52.0 5.06e-01 72.5% 85.0%
4381803 140.1.1.8 alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › tRNA-synt_1g,Anticodon_3 0.74 67.0 4.88e-01 100.0% 47.1%
3918080 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.73 51.0 4.97e-01 72.5% 78.0%
3412004 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.72 50.0 4.91e-01 72.5% 79.0%
3750020 604.1.1.1 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin 0.71 50.0 4.76e-01 72.5% 80.0%
3489764 604.1.1.1 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin 0.71 49.0 4.74e-01 72.5% 81.0%
3252622 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.70 50.0 4.94e-01 73.6% 77.9%
3940790 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.70 49.0 4.82e-01 73.6% 86.0%
3503329 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.70 49.0 4.84e-01 72.5% 83.2%
3769212 604.1.1.142 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin_SYNE1_2 0.69 49.0 4.48e-01 72.5% 72.2%
3464273 622.4.1.0 alpha bundles › YvfG-like › Mite allergen Der p 5-related › Mite allergen Der p 5-related 0.69 49.0 4.46e-01 73.6% 75.0%
3992691 604.1.1.1 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin 0.69 48.0 4.63e-01 72.5% 80.0%
3245538 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.68 48.0 4.57e-01 72.5% 78.1%
3822258 633.4.1.1 alpha bundles › Bromodomain-like › Plant invertase/pectin methylesterase inhibitor › Plant invertase/pectin methylesterase inhibitor › PMEI 0.68 51.0 4.47e-01 80.2% 90.0%
3504301 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.68 47.0 4.47e-01 72.5% 79.1%
3812310 633.4.1.1 alpha bundles › Bromodomain-like › Plant invertase/pectin methylesterase inhibitor › Plant invertase/pectin methylesterase inhibitor › PMEI 0.67 57.0 4.83e-01 94.5% 88.4%
3786069 604.12.1.56 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › ASTER 0.67 43.0 4.79e-01 71.4% 84.3%
4155154 140.1.1.11 alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › DALR_1 0.67 59.0 5.17e-01 100.0% 75.0%
4399203 140.1.1.11 alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › DALR_1 0.67 60.0 5.02e-01 100.0% 68.4%
4204169 140.1.1.11 alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › DALR_1 0.67 59.0 4.86e-01 100.0% 62.5%
3577216 5050.1.1.23 alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › CLN3 0.67 60.0 5.16e-01 100.0% 85.4%
4043184 140.1.1.11 alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › DALR_1 0.66 57.0 5.42e-01 96.7% 98.2%
4302386 140.1.1.11 alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › DALR_1 0.66 59.0 4.98e-01 100.0% 67.5%
4379268 140.1.1.11 alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › DALR_1 0.66 58.0 5.00e-01 100.0% 70.0%
4382712 5050.1.1.9 alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 0.66 59.0 4.57e-01 100.0% 50.7%
3803172 633.4.1.1 alpha bundles › Bromodomain-like › Plant invertase/pectin methylesterase inhibitor › Plant invertase/pectin methylesterase inhibitor › PMEI 0.65 53.0 4.46e-01 91.2% 84.4%
3462100 604.1.1.102 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › DUF8324 0.65 46.0 4.19e-01 73.6% 77.5%
3899176 109.27.1.1 alpha superhelices › Repetitive alpha hairpins › BACK domain › BACK domain › BACK 0.58 33.0 3.79e-01 70.3% 81.7%
3994884 5001.1.1.0 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like 0.56 44.0 3.01e-01 83.5% 84.5%
3449605 632.22.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats 0.55 48.0 4.46e-01 92.3% 81.8%
3911435 109.27.1.0 alpha superhelices › Repetitive alpha hairpins › BACK domain › BACK domain 0.55 32.0 3.39e-01 71.4% 63.7%
3976906 601.7.1.0 alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain 0.55 39.0 3.52e-01 75.8% 96.2%
3767 601.26.1.1 alpha bundles › Four-helical up-and-down bundle › YppE-like › YppE-like › DUF1798 0.53 46.0 4.24e-01 100.0% 91.9%
3839810 5086.1.1.0 alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.52 43.0 3.71e-01 90.1% 68.6%
3798533 4177.1.1.0 alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like 0.51 43.0 3.16e-01 91.2% 79.6%
3484245 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.51 36.0 3.65e-01 72.5% 90.0%
D3 medium residues 94-228_244-254
PDB