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BML_08042016_6_5m_scaffold_2_prodigal-single.1__X__X__00160

Bact-Vir

BML_08042016_6_5m_scaffold_2_prodigal-single.1__X__X__00160

Identity

Kingdom:
phage

Quality

76.0 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 5-56
PDB
CATH (79)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1ghhA00 3.30.910.10 Alpha Beta › 2-Layer Sandwich › Protein Binding, DinI Protein; Chain A › DinI-like 0.74 61.0 5.35e-01 96.2% 66.7%
3bypA00 3.30.70.1350 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Cation efflux protein, cytoplasmic domain 0.71 53.0 4.68e-01 84.6% 63.4%
3laxA00 3.30.300.30 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › ANL, C-terminal domain 0.71 60.0 4.87e-01 100.0% 54.7%
3w5xA00 3.30.70.1350 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Cation efflux protein, cytoplasmic domain 0.70 51.0 4.60e-01 82.7% 56.2%
3cb2A02 3.30.1330.20 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Tubulin/FtsZ, C-terminal domain 0.70 59.0 4.86e-01 98.1% 60.6%
6ogmD00 3.30.429.10 Alpha Beta › 2-Layer Sandwich › Macrophage Migration Inhibitory Factor › Macrophage Migration Inhibitory Factor 0.68 52.0 4.98e-01 84.6% 82.0%
2r75102 3.30.1330.20 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Tubulin/FtsZ, C-terminal domain 0.67 57.0 4.58e-01 100.0% 50.0%
3rycB02 3.30.1330.20 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Tubulin/FtsZ, C-terminal domain 0.67 55.0 4.43e-01 98.1% 98.2%
3a43A01 3.30.2320.50 Alpha Beta › 2-Layer Sandwich › hypothetical protein PF0899 fold › 0.67 57.0 5.06e-01 100.0% 68.4%
3c6vA00 3.30.429.10 Alpha Beta › 2-Layer Sandwich › Macrophage Migration Inhibitory Factor › Macrophage Migration Inhibitory Factor 0.66 56.0 4.17e-01 100.0% 79.0%
2xczA00 3.30.429.10 Alpha Beta › 2-Layer Sandwich › Macrophage Migration Inhibitory Factor › Macrophage Migration Inhibitory Factor 0.65 54.0 4.32e-01 98.1% 93.0%
1tvkA02 3.30.1330.20 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Tubulin/FtsZ, C-terminal domain 0.65 54.0 4.29e-01 98.1% 60.9%
1w5fA02 3.30.1330.20 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Tubulin/FtsZ, C-terminal domain 0.65 54.0 4.26e-01 98.1% 46.7%
1t4yA01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.65 53.0 4.57e-01 98.1% 71.9%
3d01E00 3.30.1330.40 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › RutC-like 0.64 53.0 3.95e-01 100.0% 40.0%
5nfmA00 3.30.300.90 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › BolA-like 0.64 48.0 4.29e-01 82.7% 61.3%
1ofuA02 3.30.1330.20 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Tubulin/FtsZ, C-terminal domain 0.63 52.0 4.47e-01 98.1% 59.1%
2c7yA00 3.40.47.10 Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase 0.63 52.0 3.19e-01 100.0% 15.6%
4l4qA03 3.30.300.10 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › 0.63 43.0 3.32e-01 71.2% 78.4%
6lkvA01 3.30.429.10 Alpha Beta › 2-Layer Sandwich › Macrophage Migration Inhibitory Factor › Macrophage Migration Inhibitory Factor 0.63 50.0 3.91e-01 96.2% 78.9%
2otmA00 3.30.1330.40 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › RutC-like 0.63 51.0 3.86e-01 100.0% 41.1%
1hf2A01 3.30.750.50 Alpha Beta › 2-Layer Sandwich › Transcription Regulator spoIIAA › Cell-division inhibitor MinC, N-terminal domain 0.62 48.0 4.12e-01 86.5% 78.9%
1r5pB00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.62 54.0 4.52e-01 100.0% 95.7%
2dyjA00 3.30.300.20 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain 0.62 48.0 4.14e-01 92.3% 59.3%
2mcqA01 3.30.300.90 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › BolA-like 0.61 46.0 4.17e-01 84.6% 61.3%
5z6bA01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.61 53.0 3.69e-01 100.0% 69.9%
4m1aA00 3.30.429.10 Alpha Beta › 2-Layer Sandwich › Macrophage Migration Inhibitory Factor › Macrophage Migration Inhibitory Factor 0.61 49.0 3.99e-01 94.2% 95.3%
3vpaB00 3.40.50.1440 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Tubulin/FtsZ, GTPase domain 0.61 49.0 3.19e-01 98.1% 19.6%
6izhE00 3.30.1330.40 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › RutC-like 0.59 48.0 3.84e-01 98.1% 42.1%
2ig8A00 3.30.1330.40 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › RutC-like 0.58 48.0 3.65e-01 100.0% 39.4%
1s3aA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.58 50.0 4.28e-01 100.0% 60.0%
3i3fB00 3.30.1330.40 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › RutC-like 0.58 45.0 3.62e-01 98.1% 43.0%
3pqvA02 3.30.360.20 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › RNA 3'-terminal phosphate cyclase, insert domain 0.57 47.0 4.02e-01 100.0% 63.5%
2r2jA03 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.57 46.0 3.57e-01 100.0% 47.5%
3k12D00 3.30.1330.40 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › RutC-like 0.57 46.0 3.73e-01 100.0% 45.0%
2rb9A01 3.30.1330.10 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › PurM-like, N-terminal domain 0.57 46.0 3.52e-01 98.1% 37.5%
2fy6A00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.57 49.0 3.62e-01 100.0% 61.5%
4o32C00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.56 48.0 4.07e-01 100.0% 69.2%
2ljaA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.56 48.0 3.52e-01 100.0% 57.2%
4n6kA00 3.40.190.170 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Bacterial extracellular solute-binding protein, family 7 0.56 46.0 2.92e-01 96.2% 19.6%
3apoA06 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.55 49.0 3.80e-01 100.0% 52.2%
2lstA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.55 48.0 3.63e-01 100.0% 52.3%
3gmfA01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.55 48.0 4.01e-01 100.0% 59.1%
3hdcA01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.55 48.0 3.63e-01 100.0% 64.8%
4cw9B00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.55 48.0 3.87e-01 100.0% 55.8%
3uorB01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.55 47.0 3.27e-01 100.0% 67.7%
4o89A02 3.30.360.20 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › RNA 3'-terminal phosphate cyclase, insert domain 0.55 44.0 3.80e-01 98.1% 58.5%
2l57A00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.55 43.0 3.52e-01 100.0% 52.4%
3v4dB00 3.30.1330.40 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › RutC-like 0.55 44.0 3.52e-01 100.0% 42.4%
1x5eA01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.54 45.0 3.67e-01 100.0% 58.7%
4fybA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.54 46.0 3.34e-01 100.0% 53.4%
3erwF00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.54 45.0 3.47e-01 100.0% 67.9%
1pf5A00 3.30.1330.40 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › RutC-like 0.54 42.0 3.39e-01 98.1% 40.0%
2dbsA00 3.40.1350.20 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.54 37.0 3.32e-01 73.1% 93.8%
2diyA01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.54 45.0 3.65e-01 100.0% 55.9%
3outA01 3.40.50.1860 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.54 44.0 3.29e-01 100.0% 63.2%
3q6oA01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.53 45.0 3.47e-01 100.0% 52.3%
3qdnA01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.53 46.0 3.63e-01 100.0% 55.8%
3kcmF00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.53 44.0 3.40e-01 100.0% 64.5%
2l5oA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.53 46.0 3.36e-01 100.0% 58.0%
2dj0A01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.53 44.0 3.47e-01 100.0% 55.6%
3razA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.53 44.0 3.39e-01 100.0% 67.4%
3hz4A00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.53 44.0 3.49e-01 100.0% 52.5%
2ycdA01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.53 44.0 3.86e-01 100.0% 74.4%
1yawB01 3.30.1330.10 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › PurM-like, N-terminal domain 0.53 42.0 3.31e-01 98.1% 40.3%
3bciA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.53 45.0 3.19e-01 98.1% 88.5%
3vfiA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.53 43.0 3.60e-01 100.0% 60.6%
1gh2A00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.52 43.0 3.56e-01 100.0% 57.9%
5j7dC00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.52 45.0 3.61e-01 100.0% 59.4%
4tveA01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.52 43.0 3.43e-01 98.1% 82.9%
3cynB00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.52 44.0 3.15e-01 100.0% 40.5%
1w4vA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.52 42.0 3.48e-01 100.0% 57.3%
4fo5A00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.51 42.0 3.28e-01 100.0% 73.5%
2ewcB00 3.30.1330.40 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › RutC-like 0.51 40.0 3.29e-01 98.1% 47.9%
2dlxA01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.51 43.0 3.44e-01 100.0% 60.2%
5aykA07 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.51 42.0 3.40e-01 100.0% 60.0%
7aooB01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.51 42.0 3.11e-01 100.0% 78.4%
3apqA02 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.51 42.0 3.37e-01 100.0% 52.6%
4euyA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.50 42.0 3.71e-01 100.0% 64.0%
ECOD (94)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5037185 327.7.1.1 a+b two layers › Alpha-lytic protease prodomain-like › Cation efflux protein cytoplasmic domain-like › Cation efflux protein cytoplasmic domain-like › ZT_dimer 0.74 57.0 4.91e-01 86.5% 63.5%
4213821 327.6.1.0 a+b two layers › Alpha-lytic protease prodomain-like › Fe-S cluster assembly (FSCA) domain-like › Fe-S cluster assembly (FSCA) domain-like 0.70 52.0 4.76e-01 84.6% 58.7%
4939241 301.9.1.1 a+b three layers › Bacillus chorismate mutase-like › HypA Ni-binding domain › HypA Ni-binding domain › HypA 0.70 61.0 5.33e-01 100.0% 68.8%
3322800 301.6.1.0 a+b three layers › Bacillus chorismate mutase-like › Tubulin C-terminal domain-like › Tubulin C-terminal domain-like 0.69 59.0 4.58e-01 100.0% 46.7%
4023969 327.6.1.2 a+b two layers › Alpha-lytic protease prodomain-like › Fe-S cluster assembly (FSCA) domain-like › Fe-S cluster assembly (FSCA) domain-like › FeS_assembly_P 0.68 51.0 4.32e-01 82.7% 47.8%
4201475 301.6.1.1 a+b three layers › Bacillus chorismate mutase-like › Tubulin C-terminal domain-like › Tubulin C-terminal domain-like › Tubulin_C 0.67 56.0 3.90e-01 98.1% 62.1%
4930789 301.9.1.1 a+b three layers › Bacillus chorismate mutase-like › HypA Ni-binding domain › HypA Ni-binding domain › HypA 0.67 57.0 4.99e-01 98.1% 68.8%
3419493 207.1.1.95 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_14 0.67 49.0 3.00e-01 82.7% 11.9%
165987 301.6.1.2 a+b three layers › Bacillus chorismate mutase-like › Tubulin C-terminal domain-like › Tubulin C-terminal domain-like › FtsZ_C 0.67 57.0 4.33e-01 100.0% 42.3%
3924160 327.7.1.1 a+b two layers › Alpha-lytic protease prodomain-like › Cation efflux protein cytoplasmic domain-like › Cation efflux protein cytoplasmic domain-like › ZT_dimer 0.66 49.0 4.14e-01 84.6% 46.7%
4950096 301.9.1.1 a+b three layers › Bacillus chorismate mutase-like › HypA Ni-binding domain › HypA Ni-binding domain › HypA 0.66 56.0 4.83e-01 100.0% 69.4%
3839998 301.9.1.1 a+b three layers › Bacillus chorismate mutase-like › HypA Ni-binding domain › HypA Ni-binding domain › HypA 0.66 55.0 4.91e-01 100.0% 68.8%
3064547 2485.1.1.27 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › KaiB 0.66 54.0 4.74e-01 98.1% 74.4%
3634941 2485.1.1.19 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › L51_S25_CI-B8 0.65 58.0 4.68e-01 100.0% 53.7%
2718743 2485.1.1.19 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › L51_S25_CI-B8 0.65 57.0 4.16e-01 100.0% 37.2%
3518732 2485.1.1.19 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › L51_S25_CI-B8 0.64 57.0 4.17e-01 100.0% 37.8%
4027601 2485.1.1.19 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › L51_S25_CI-B8 0.64 57.0 4.35e-01 100.0% 44.3%
3492857 2485.1.1.19 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › L51_S25_CI-B8 0.64 57.0 4.08e-01 100.0% 36.4%
4229964 301.9.1.1 a+b three layers › Bacillus chorismate mutase-like › HypA Ni-binding domain › HypA Ni-binding domain › HypA 0.64 53.0 4.76e-01 100.0% 68.8%
3284185 301.7.1.1 a+b three layers › Bacillus chorismate mutase-like › YjgF-like › YjgF-like › Ribonuc_L-PSP 0.64 52.0 4.03e-01 100.0% 45.2%
4803218 563.1.1.1 alpha bundles › ATPD N-terminal domain-like › N-terminal domain of the delta subunit of the F1F0-ATP synthase › N-terminal domain of the delta subunit of the F1F0-ATP synthase › OSCP 0.63 50.0 3.60e-01 94.2% 33.7%
2644098 2485.1.1.19 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › L51_S25_CI-B8 0.62 55.0 4.62e-01 100.0% 59.3%
3493215 2485.1.1.0 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like 0.62 53.0 3.61e-01 100.0% 49.0%
5001827 2005.1.1.3 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Usp 0.62 50.0 3.72e-01 98.1% 36.7%
5060057 2485.2.1.0 a+b three layers › Thioredoxin-like › RNA 3'-terminal phosphate cyclase, RPTC, insert domain › RNA 3'-terminal phosphate cyclase, RPTC, insert domain 0.61 50.0 4.17e-01 100.0% 61.0%
1106826 327.2.1.1 a+b two layers › Alpha-lytic protease prodomain-like › BolA-like › BolA-like › BolA 0.61 46.0 4.14e-01 84.6% 59.7%
3906157 2485.1.1.19 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › L51_S25_CI-B8 0.61 54.0 4.34e-01 100.0% 51.0%
4021437 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.61 47.0 3.17e-01 100.0% 20.9%
5055670 301.2.1.1 a+b three layers › Bacillus chorismate mutase-like › PurM N-terminal domain-like › PurM N-terminal domain-like › AIRS 0.61 49.0 3.72e-01 100.0% 35.3%
3674397 2485.1.1.82 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › ATP-synt_10 0.60 52.0 4.33e-01 100.0% 62.1%
3261678 2485.1.1.1 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin 0.60 52.0 3.98e-01 100.0% 53.6%
3394261 327.11.1.4 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Prokaryotic type KH domain (KH-domain type II) › MRP-S24 0.60 46.0 3.54e-01 88.5% 40.0%
3176876 2485.1.1.20 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Glrx-like 0.60 53.0 4.24e-01 100.0% 64.4%
4964054 2485.1.1.34 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Rdx 0.60 51.0 4.50e-01 100.0% 65.3%
4013321 2485.1.1.19 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › L51_S25_CI-B8 0.60 52.0 4.31e-01 100.0% 54.3%
4652977 2485.1.1.27 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › KaiB 0.60 49.0 3.98e-01 98.1% 55.7%
5014625 301.2.1.1 a+b three layers › Bacillus chorismate mutase-like › PurM N-terminal domain-like › PurM N-terminal domain-like › AIRS 0.60 49.0 3.75e-01 100.0% 40.0%
4030171 2485.1.1.123 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › PF26962 0.60 54.0 4.30e-01 100.0% 54.0%
4002539 2485.1.1.94 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › DJC16_C 0.60 48.0 3.06e-01 100.0% 27.0%
3935842 2485.1.1.19 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › L51_S25_CI-B8 0.59 52.0 3.95e-01 100.0% 41.6%
3605916 2485.1.1.0 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like 0.59 51.0 3.90e-01 100.0% 41.5%
5044483 2485.1.1.0 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like 0.59 50.0 4.10e-01 98.1% 84.0%
3581286 2485.1.1.0 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like 0.59 52.0 3.80e-01 100.0% 37.4%
4021308 2485.2.1.0 a+b three layers › Thioredoxin-like › RNA 3'-terminal phosphate cyclase, RPTC, insert domain › RNA 3'-terminal phosphate cyclase, RPTC, insert domain 0.59 49.0 3.93e-01 100.0% 59.1%
5041554 2485.2.1.1 a+b three layers › Thioredoxin-like › RNA 3'-terminal phosphate cyclase, RPTC, insert domain › RNA 3'-terminal phosphate cyclase, RPTC, insert domain › RTC_insert 0.59 48.0 4.13e-01 100.0% 60.0%
4981267 304.111.1.4 a+b two layers › Alpha-beta plaits › PurM C-terminal domain-like › PurM C-terminal domain-like › AIRS 0.59 48.0 3.02e-01 100.0% 17.6%
None 0.59 50.0 3.79e-01 100.0% 54.1%
3247200 2485.1.1.0 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like 0.58 45.0 3.71e-01 94.2% 60.0%
3666624 2006.1.1.35 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Pex22_HAD-like 0.58 43.0 3.66e-01 86.5% 83.0%
3285473 2485.1.1.1 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin 0.58 49.0 3.71e-01 100.0% 48.9%
3300991 2485.2.1.1 a+b three layers › Thioredoxin-like › RNA 3'-terminal phosphate cyclase, RPTC, insert domain › RNA 3'-terminal phosphate cyclase, RPTC, insert domain › RTC_insert 0.58 48.0 3.80e-01 100.0% 49.2%
4960976 2485.1.1.0 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like 0.58 49.0 3.85e-01 98.1% 80.9%
3715712 2485.2.1.1 a+b three layers › Thioredoxin-like › RNA 3'-terminal phosphate cyclase, RPTC, insert domain › RNA 3'-terminal phosphate cyclase, RPTC, insert domain › RTC_insert 0.58 47.0 3.92e-01 100.0% 59.0%
4975408 2485.1.1.1 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin 0.57 50.0 3.90e-01 100.0% 79.1%
4961349 2485.1.1.9 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › 2Fe-2S_thioredx 0.57 48.0 4.18e-01 98.1% 67.1%
2775486 2485.1.1.45 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin_8 0.57 48.0 3.63e-01 100.0% 87.8%
4024687 2485.1.1.0 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like 0.57 50.0 3.48e-01 100.0% 38.9%
3475110 3008.1.1.0 a+b three layers › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 0.57 46.0 3.81e-01 98.1% 60.0%
3387251 301.2.1.1 a+b three layers › Bacillus chorismate mutase-like › PurM N-terminal domain-like › PurM N-terminal domain-like › AIRS 0.57 46.0 3.72e-01 100.0% 48.3%
3597281 2485.2.1.0 a+b three layers › Thioredoxin-like › RNA 3'-terminal phosphate cyclase, RPTC, insert domain › RNA 3'-terminal phosphate cyclase, RPTC, insert domain 0.57 47.0 3.87e-01 100.0% 59.0%
4024682 2485.1.1.1 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin 0.57 50.0 3.77e-01 100.0% 49.6%
4486689 2485.1.1.78 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Suc_Fer-like 0.57 48.0 3.81e-01 100.0% 50.4%
3695917 2485.1.1.1 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin 0.56 47.0 3.65e-01 100.0% 47.7%
136276 301.7.1.1 a+b three layers › Bacillus chorismate mutase-like › YjgF-like › YjgF-like › Ribonuc_L-PSP 0.56 45.0 3.53e-01 98.1% 42.0%
4991549 301.2.1.1 a+b three layers › Bacillus chorismate mutase-like › PurM N-terminal domain-like › PurM N-terminal domain-like › AIRS 0.56 45.0 3.43e-01 100.0% 37.4%
3427403 2008.1.1.151 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PF28664 0.56 48.0 3.43e-01 100.0% 33.9%
3594778 2485.1.1.0 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like 0.56 49.0 3.81e-01 100.0% 55.7%
3509786 2485.1.1.87 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › UBX7_N 0.56 47.0 3.87e-01 100.0% 62.9%
1520753 7523.1.1.2 a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Transferrin 0.56 43.0 3.74e-01 92.3% 61.3%
3508878 7502.1.1.0 a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS 0.56 47.0 3.53e-01 100.0% 55.0%
162000 2485.1.1.1 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin 0.56 46.0 3.52e-01 100.0% 47.1%
5068892 2485.1.1.4 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › AhpC-TSA 0.55 49.0 3.51e-01 100.0% 55.3%
2125196 2485.2.1.1 a+b three layers › Thioredoxin-like › RNA 3'-terminal phosphate cyclase, RPTC, insert domain › RNA 3'-terminal phosphate cyclase, RPTC, insert domain › RTC_insert 0.55 44.0 3.75e-01 98.1% 50.5%
3881647 2485.2.1.1 a+b three layers › Thioredoxin-like › RNA 3'-terminal phosphate cyclase, RPTC, insert domain › RNA 3'-terminal phosphate cyclase, RPTC, insert domain › RTC_insert 0.55 44.0 3.65e-01 98.1% 53.6%
2763378 2485.1.1.45 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin_8 0.55 47.0 3.47e-01 100.0% 84.0%
4943512 301.2.1.1 a+b three layers › Bacillus chorismate mutase-like › PurM N-terminal domain-like › PurM N-terminal domain-like › AIRS 0.55 43.0 3.28e-01 98.1% 35.5%
3424280 2485.1.1.1 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin 0.55 47.0 3.87e-01 100.0% 64.0%
4943648 2485.1.1.0 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like 0.54 47.0 3.93e-01 98.1% 70.0%
3839486 2485.1.1.37 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin_2 0.54 46.0 3.26e-01 100.0% 49.1%
3848840 2485.1.1.107 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › PF30536 0.54 46.0 3.91e-01 100.0% 77.8%
4264956 2485.2.1.1 a+b three layers › Thioredoxin-like › RNA 3'-terminal phosphate cyclase, RPTC, insert domain › RNA 3'-terminal phosphate cyclase, RPTC, insert domain › RTC_insert 0.54 42.0 3.72e-01 100.0% 58.9%
3602153 2485.2.1.1 a+b three layers › Thioredoxin-like › RNA 3'-terminal phosphate cyclase, RPTC, insert domain › RNA 3'-terminal phosphate cyclase, RPTC, insert domain › RTC_insert 0.54 42.0 3.69e-01 98.1% 57.9%
5067538 2485.1.1.0 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like 0.54 46.0 3.70e-01 98.1% 94.3%
5070870 2485.1.1.0 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like 0.54 46.0 3.73e-01 98.1% 94.0%
3928408 2485.1.1.0 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like 0.53 46.0 3.51e-01 100.0% 51.2%
4299584 2485.1.1.10 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › DSBA 0.53 45.0 3.19e-01 100.0% 74.7%
4110960 2485.2.1.1 a+b three layers › Thioredoxin-like › RNA 3'-terminal phosphate cyclase, RPTC, insert domain › RNA 3'-terminal phosphate cyclase, RPTC, insert domain › RTC_insert 0.53 42.0 3.66e-01 100.0% 57.9%
4977866 301.2.1.1 a+b three layers › Bacillus chorismate mutase-like › PurM N-terminal domain-like › PurM N-terminal domain-like › AIRS 0.53 41.0 3.20e-01 100.0% 37.3%
5045167 2485.1.1.38 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin_3 0.52 47.0 3.83e-01 100.0% 63.2%
5054359 2485.1.1.0 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like 0.52 44.0 3.08e-01 98.1% 48.9%
5061896 2485.1.1.0 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like 0.52 42.0 3.35e-01 98.1% 86.4%
5082654 2485.1.1.0 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like 0.52 44.0 3.30e-01 100.0% 47.9%
4013078 7512.1.1.54 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Alg14 0.51 45.0 2.87e-01 100.0% 82.4%
4973663 2485.1.1.37 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin_2 0.51 39.0 3.37e-01 98.1% 65.4%
D2 medium residues 65-103
PDB
Domain cluster: representative
CATH (10)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3g36B00 1.20.890.10 Mainly Alpha › Up-down Bundle › cAMP-dependent Protein Kinase, Chain A › cAMP-dependent protein kinase regulatory subunit, dimerization-anchoring domain 0.86 63.0 5.78e-01 79.5% 72.5%
4aw8A00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.78 55.0 3.54e-01 84.6% 16.1%
4ixjA01 3.30.1300.80 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › 0.65 45.0 3.83e-01 76.9% 41.6%
1nrwA02 3.30.1240.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › 0.64 45.0 3.26e-01 76.9% 23.1%
2ic6A00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.62 45.0 3.67e-01 76.9% 46.5%
3p2mA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.60 43.0 2.66e-01 84.6% 66.5%
1s8nA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 48.0 4.36e-01 100.0% 84.5%
2e1qC10 3.30.365.10 Alpha Beta › 2-Layer Sandwich › Aldehyde Oxidoreductase; domain 4 › Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain 0.56 42.0 3.18e-01 97.4% 63.3%
1n5uA01 1.10.246.10 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › 0.54 41.0 3.29e-01 100.0% 82.5%
3tixB03 3.40.50.11490 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.54 38.0 2.85e-01 92.3% 88.6%
ECOD (8)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4876018 541.1.1.2 alpha duplicates or obligate multimers › Dimerization-anchoring domain of cAMP-dependent type II PK regulatory subunit › Dimerization-anchoring domain of cAMP-dependent type II PK regulatory subunit › Dimerization-anchoring domain of cAMP-dependent type II PK regulatory subunit › Dpy-30 0.87 64.0 6.10e-01 79.5% 80.4%
3592813 541.1.1.2 alpha duplicates or obligate multimers › Dimerization-anchoring domain of cAMP-dependent type II PK regulatory subunit › Dimerization-anchoring domain of cAMP-dependent type II PK regulatory subunit › Dimerization-anchoring domain of cAMP-dependent type II PK regulatory subunit › Dpy-30 0.81 61.0 5.82e-01 82.1% 84.4%
4948659 2003.1.5.66 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_11 0.81 57.0 3.63e-01 76.9% 15.8%
3510242 103.1.1.0 alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain 0.77 62.0 5.56e-01 92.3% 65.5%
3509898 541.1.1.0 alpha duplicates or obligate multimers › Dimerization-anchoring domain of cAMP-dependent type II PK regulatory subunit › Dimerization-anchoring domain of cAMP-dependent type II PK regulatory subunit › Dimerization-anchoring domain of cAMP-dependent type II PK regulatory subunit 0.74 54.0 5.22e-01 79.5% 80.0%
4959424 103.6.1.0 alpha arrays › RuvA-C › FGAM synthase PurL, linker domain › FGAM synthase PurL, linker domain 0.69 49.0 4.43e-01 74.4% 56.4%
5048048 4957.1.1.9 a+b complex topology › helical domain in yeast RNA-polymerases › third helical domain in yeast RNA-polymerase II beta-prime subunit › third helical domain in yeast RNA-polymerase II beta-prime subunit › HAAS 0.62 49.0 4.22e-01 100.0% 78.7%
3483536 5059.1.1.0 alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter 0.60 45.0 3.29e-01 84.6% 59.2%