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BML_08042016_6_5m_scaffold_2_prodigal-single.1__X__X__00179
Bact-VirBML_08042016_6_5m_scaffold_2_prodigal-single.1__X__X__00179
Identity
- Kingdom:
- phage
Quality
55.6
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 5-88
Domain cluster:
representative
CATH (11)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3k7dA01 | 1.20.120.1510 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.63 | 48.0 | 4.47e-01 | 85.7% | 98.2% |
| 1zv1A00 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.61 | 38.0 | 4.25e-01 | 89.3% | 88.1% |
| 4bbrM00 | 1.10.472.170 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › | 0.60 | 44.0 | 3.46e-01 | 79.8% | 68.4% |
| 1nvmA02 | 1.10.8.60 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.60 | 40.0 | 4.39e-01 | 70.2% | 100.0% |
| 2uuqA00 | 1.10.630.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 | 0.59 | 41.0 | 2.65e-01 | 72.6% | 15.7% |
| 3qybA03 | 1.10.472.80 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Ypt/Rab-GAP domain of gyp1p, domain 3 | 0.59 | 44.0 | 3.82e-01 | 79.8% | 74.2% |
| 1n1bB02 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.56 | 43.0 | 3.05e-01 | 86.9% | 62.1% |
| 1bedA00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.54 | 39.0 | 3.15e-01 | 78.6% | 50.8% |
| 4nxtA01 | 1.10.1410.40 | Mainly Alpha › Orthogonal Bundle › Poly(a)-polymerase, middle domain › | 0.53 | 46.0 | 3.93e-01 | 100.0% | 78.6% |
| 2kr6A01 | 1.10.472.100 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Presenilin | 0.52 | 42.0 | 3.97e-01 | 91.7% | 82.1% |
| 3fdqA01 | 1.20.120.1030 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Motility repressor MogR, DNA-binding domain | 0.50 | 37.0 | 3.26e-01 | 77.4% | 60.7% |
ECOD (17)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5078735 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.68 | 46.0 | 4.44e-01 | 70.2% | 100.0% |
| 3256076 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.65 | 50.0 | 5.07e-01 | 84.5% | 92.9% |
| 3412253 | 524.1.1.1 ↗ | alpha arrays › Ypt/Rab-GAP domain of gyp1p-like › Ypt/Rab-GAP domain of gyp1p › Ypt/Rab-GAP domain of gyp1p › RabGAP-TBC | 0.62 | 49.0 | 4.15e-01 | 88.1% | 68.7% |
| 4629851 | 103.5.1.2 ↗ | alpha arrays › RuvA-C › post-HMGL domain-like › post-HMGL domain-like › DmpG_comm | 0.62 | 43.0 | 4.54e-01 | 73.8% | 89.3% |
| 3813679 | 130.1.1.60 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › zf-RVT | 0.62 | 44.0 | 3.65e-01 | 76.2% | 94.2% |
| 55471 | 611.5.1.0 ↗ | alpha bundles › N-cbl like › Superantigen MAM N-terminal domain › Superantigen MAM N-terminal domain | 0.61 | 41.0 | 3.66e-01 | 70.2% | 71.0% |
| 4999517 | 2004.1.1.156 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_5 | 0.61 | 45.0 | 3.24e-01 | 81.0% | 34.8% |
| 4634678 | 507.1.1.0 ↗ | alpha arrays › DnaB helicase N-terminal domain-related › DnaB helicase N-terminal domain-related › DnaB helicase N-terminal domain-related | 0.60 | 36.0 | 2.94e-01 | 94.0% | 31.6% |
| 3606616 | 304.115.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in DAHP synthase › Ferredoxin-like domain in DAHP synthase | 0.59 | 48.0 | 3.98e-01 | 88.1% | 96.7% |
| 3691996 | 632.1.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase middle domain › Families 57/38 glycoside transferase middle domain | 0.59 | 40.0 | 3.96e-01 | 70.2% | 85.6% |
| 3787521 | 101.1.10.1 ↗ | alpha arrays › HTH › HTH › Cyclin-like › Cyclin_N | 0.58 | 43.0 | 3.54e-01 | 81.0% | 80.6% |
| 4255110 | 2485.1.1.42 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin_5 | 0.57 | 41.0 | 3.12e-01 | 76.2% | 56.1% |
| 3651135 | 3788.1.1.20 ↗ | alpha bundles › Viral accessory protein x (Vpx) / viral protein r (Vpr) › Viral accessory protein x (Vpx) / viral protein r (Vpr) › Viral accessory protein x (Vpx) / viral protein r (Vpr) › VIN3_C | 0.57 | 39.0 | 4.06e-01 | 71.4% | 86.7% |
| 4971724 | 3239.1.1.1 ↗ | alpha complex topology › Cas1 › Cas1 › Cas1 › Cas_Cas1 | 0.54 | 46.0 | 3.14e-01 | 98.8% | 87.0% |
| 5073852 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.54 | 46.0 | 4.11e-01 | 98.8% | 96.0% |
| 3603720 | 2006.1.3.0 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain | 0.53 | 38.0 | 3.01e-01 | 76.2% | 97.9% |
| 4940134 | 2485.1.1.0 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like | 0.53 | 39.0 | 3.06e-01 | 78.6% | 50.3% |
D2
medium
residues 95-214_297-331