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BML_08042016_6_5m_scaffold_2_prodigal-single.1__X__X__00339
Bact-VirBML_08042016_6_5m_scaffold_2_prodigal-single.1__X__X__00339
Identity
- Kingdom:
- phage
Quality
78.4
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 5-51
Domain cluster:
representative
CATH (43)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2g8lB01 | 1.10.8.380 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Uncharacterised protein PF01937, DUF89, domain 1 | 0.84 | 74.0 | 6.59e-01 | 100.0% | 83.6% |
| 3lupA01 | 3.40.50.10170 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.79 | 69.0 | 4.80e-01 | 100.0% | 97.4% |
| 3jr7A01 | 3.40.50.10440 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Dihydroxyacetone kinase; domain 1 | 0.78 | 68.0 | 5.08e-01 | 100.0% | 95.8% |
| 2aplA01 | 1.10.8.330 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › PG0816-like | 0.78 | 66.0 | 5.88e-01 | 97.9% | 94.1% |
| 4ae4A00 | 1.20.120.1920 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › UBAP1 SOUBA domain | 0.78 | 66.0 | 5.00e-01 | 97.9% | 42.1% |
| 2x3mA00 | 1.25.40.670 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.77 | 65.0 | 4.34e-01 | 91.5% | 41.0% |
| 1tfeA02 | 1.10.286.20 | Mainly Alpha › Orthogonal Bundle › GTP Cyclohydrolase I; Chain A, domain 1 › | 0.76 | 52.0 | 5.36e-01 | 74.5% | 77.8% |
| 3c3dA02 | 1.10.8.240 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › CofD-like domain | 0.75 | 63.0 | 5.21e-01 | 97.9% | 98.9% |
| 1q5nA03 | 1.10.40.30 | Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase Protein R1; domain 1 › Fumarase/aspartase (C-terminal domain) | 0.75 | 64.0 | 5.43e-01 | 100.0% | 61.7% |
| 3b4qA00 | 1.10.1200.100 | Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › conserved protein domain from corynebacterium diphtheriae | 0.74 | 60.0 | 4.98e-01 | 100.0% | 50.6% |
| 3tdgA02 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.74 | 65.0 | 4.70e-01 | 100.0% | 66.7% |
| 6xzqA01 | 3.40.91.90 | Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › Influenza RNA-dependent RNA polymerase subunit PA, endonuclease domain | 0.73 | 54.0 | 3.84e-01 | 93.6% | 24.7% |
| 1rr7A01 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.73 | 51.0 | 5.23e-01 | 74.5% | 76.1% |
| 1qdmA03 | 1.10.225.10 | Mainly Alpha › Orthogonal Bundle › NK-Lysin › Saposin-like | 0.72 | 61.0 | 5.21e-01 | 95.7% | 79.2% |
| 3rmiA00 | 1.20.59.10 | Mainly Alpha › Up-down Bundle › Chorismate Mutase Domain, subunit A › Chorismate mutase | 0.71 | 51.0 | 3.99e-01 | 76.6% | 34.3% |
| 4lg3A02 | 6.10.20.130 | Special › Helix non-globular › Arc Repressor Mutant, subunit A › | 0.71 | 47.0 | 4.91e-01 | 70.2% | 86.0% |
| 1pjqA03 | 1.10.8.210 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Sirohaem synthase, dimerisation domain | 0.71 | 59.0 | 5.39e-01 | 97.9% | 86.2% |
| 1mw9X02 | 1.10.460.10 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; domain 2 › Topoisomerase I, domain 2 | 0.70 | 60.0 | 4.15e-01 | 100.0% | 90.8% |
| 1vhxB00 | 3.30.420.140 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › YqgF/RNase H-like domain | 0.69 | 44.0 | 3.19e-01 | 78.7% | 21.7% |
| 3lcnB00 | 1.10.340.40 | Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Nuclear abundant poly(A) RNA-bind protein 2, N-terminal domain | 0.69 | 57.0 | 4.68e-01 | 100.0% | 91.8% |
| 1nh2B00 | 1.10.287.100 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.68 | 46.0 | 4.66e-01 | 72.3% | 100.0% |
| 3kd3A02 | 1.10.150.210 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Phosphoserine phosphatase; domain 2 | 0.67 | 55.0 | 5.18e-01 | 95.7% | 75.0% |
| 1vplA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.67 | 52.0 | 3.45e-01 | 95.7% | 25.6% |
| 1nvpB00 | 1.10.287.100 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.67 | 46.0 | 4.69e-01 | 74.5% | 81.4% |
| 2go7A02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.66 | 52.0 | 4.69e-01 | 100.0% | 62.7% |
| 3pvzB00 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.66 | 56.0 | 3.47e-01 | 100.0% | 53.7% |
| 4a2qA01 | 1.10.533.10 | Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas | 0.66 | 50.0 | 4.11e-01 | 95.7% | 44.1% |
| 4oa3A00 | 3.10.310.50 | Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › | 0.65 | 53.0 | 3.92e-01 | 100.0% | 34.0% |
| 3k1rA01 | 1.20.1160.20 | Mainly Alpha › Up-down Bundle › Paired amphipathic helix 2 (pah2 repeat) › | 0.64 | 55.0 | 4.69e-01 | 100.0% | 58.0% |
| 2da3A01 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.64 | 41.0 | 4.18e-01 | 72.3% | 66.0% |
| 2ld7B00 | 1.20.1160.11 | Mainly Alpha › Up-down Bundle › Paired amphipathic helix 2 (pah2 repeat) › Paired amphipathic helix | 0.64 | 52.0 | 4.57e-01 | 95.7% | 62.7% |
| 1e3oC02 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.64 | 43.0 | 4.35e-01 | 80.9% | 70.8% |
| 3kp1E02 | 1.10.8.1000 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ornithine 4,5 aminomutase S component, alpha subunit-like | 0.63 | 51.0 | 4.64e-01 | 100.0% | 74.3% |
| 1uaaA02 | 1.10.10.160 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.62 | 53.0 | 4.62e-01 | 97.9% | 66.2% |
| 3djbA01 | 1.10.472.50 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › HD-domain/PDEase-like | 0.62 | 51.0 | 4.15e-01 | 95.7% | 59.4% |
| 1ursA02 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.62 | 50.0 | 3.52e-01 | 100.0% | 78.2% |
| 1x2mA01 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.61 | 41.0 | 3.99e-01 | 70.2% | 63.0% |
| 2mgqA00 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.60 | 44.0 | 4.03e-01 | 89.4% | 58.8% |
| 2da7A00 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.58 | 42.0 | 3.66e-01 | 76.6% | 76.1% |
| 1s8nA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.57 | 45.0 | 4.35e-01 | 95.7% | 84.5% |
| 1wh5A00 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.57 | 43.0 | 3.72e-01 | 87.2% | 51.2% |
| 1tuoA03 | 3.40.120.10 | Alpha Beta › 3-Layer(aba) Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 3 › Alpha-D-Glucose-1,6-Bisphosphate, subunit A, domain 3 | 0.53 | 46.0 | 3.48e-01 | 100.0% | 97.4% |
| 6znjB01 | 3.40.50.10950 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.51 | 41.0 | 3.08e-01 | 100.0% | 43.2% |
ECOD (48)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3565003 | 165.1.1.3 ↗ | alpha duplicates or obligate multimers › Dimerisation interlock › SinR repressor dimerisation domain-like › SinR repressor dimerisation domain-like › PF28222 | 0.92 | 63.0 | 7.15e-01 | 72.3% | 97.1% |
| 3994704 | 108.1.1.0 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand | 0.87 | 65.0 | 5.84e-01 | 80.9% | 63.1% |
| 3391605 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.85 | 60.0 | 5.34e-01 | 74.5% | 67.7% |
| 5022284 | 4009.1.1.0 ↗ | alpha bundles › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins | 0.85 | 76.0 | 6.47e-01 | 100.0% | 74.7% |
| 5047035 | 4009.1.1.0 ↗ | alpha bundles › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins | 0.84 | 73.0 | 6.80e-01 | 100.0% | 91.7% |
| 4976851 | 4009.1.1.0 ↗ | alpha bundles › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins | 0.83 | 74.0 | 6.44e-01 | 100.0% | 78.6% |
| 5034808 | 4009.1.1.1 ↗ | alpha bundles › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › ARMT1-like_dom | 0.80 | 69.0 | 6.10e-01 | 100.0% | 80.0% |
| 3708175 | 103.1.1.0 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain | 0.79 | 66.0 | 6.35e-01 | 100.0% | 83.6% |
| 4948274 | 164.1.1.1 ↗ | alpha bundles › Chorismate mutase II › Chorismate mutase II › Chorismate mutase II › CM_2 | 0.77 | 54.0 | 4.67e-01 | 74.5% | 46.7% |
| 3926800 | 3443.1.1.0 ↗ | alpha duplicates or obligate multimers › Get5 carboxyl domain › Get5 carboxyl domain › Get5 carboxyl domain | 0.76 | 61.0 | 5.64e-01 | 89.4% | 70.0% |
| 3685821 | 129.1.1.15 ↗ | alpha arrays › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › P5CR_dimer | 0.76 | 53.0 | 4.00e-01 | 74.5% | 30.4% |
| 5075474 | 164.1.1.1 ↗ | alpha bundles › Chorismate mutase II › Chorismate mutase II › Chorismate mutase II › CM_2 | 0.75 | 53.0 | 4.47e-01 | 74.5% | 43.8% |
| 4928147 | 186.1.1.0 ↗ | alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N | 0.75 | 61.0 | 4.84e-01 | 95.7% | 44.8% |
| 4953325 | 164.1.1.1 ↗ | alpha bundles › Chorismate mutase II › Chorismate mutase II › Chorismate mutase II › CM_2 | 0.74 | 52.0 | 4.15e-01 | 74.5% | 36.8% |
| 5003451 | 186.1.1.4 ↗ | alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_4 | 0.72 | 62.0 | 4.60e-01 | 100.0% | 65.6% |
| 3378995 | 108.1.1.111 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand › DUF7952 | 0.72 | 61.0 | 5.88e-01 | 100.0% | 83.6% |
| 4947240 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.72 | 63.0 | 3.74e-01 | 100.0% | 16.6% |
| 4988048 | 3788.1.1.0 ↗ | alpha bundles › Viral accessory protein x (Vpx) / viral protein r (Vpr) › Viral accessory protein x (Vpx) / viral protein r (Vpr) › Viral accessory protein x (Vpx) / viral protein r (Vpr) | 0.72 | 62.0 | 5.75e-01 | 97.9% | 86.7% |
| 3822871 | 108.1.1.23 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand › RST | 0.71 | 61.0 | 5.66e-01 | 100.0% | 76.7% |
| 4361639 | 103.1.1.6 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › RuvA_C | 0.71 | 61.0 | 5.21e-01 | 100.0% | 60.8% |
| 3438800 | 108.1.1.23 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand › RST | 0.71 | 60.0 | 5.36e-01 | 100.0% | 65.7% |
| 3188842 | 129.1.1.15 ↗ | alpha arrays › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › P5CR_dimer | 0.71 | 49.0 | 3.67e-01 | 74.5% | 28.0% |
| 4990523 | 129.1.1.15 ↗ | alpha arrays › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › P5CR_dimer | 0.70 | 47.0 | 3.89e-01 | 72.3% | 35.8% |
| 3926773 | 186.1.1.0 ↗ | alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N | 0.70 | 46.0 | 3.72e-01 | 70.2% | 33.7% |
| 3536325 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.69 | 50.0 | 4.75e-01 | 76.6% | 67.3% |
| 3922012 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.69 | 57.0 | 4.70e-01 | 100.0% | 52.6% |
| 5021484 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.69 | 56.0 | 4.74e-01 | 100.0% | 55.6% |
| 3239257 | 103.1.1.0 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain | 0.68 | 56.0 | 5.28e-01 | 100.0% | 80.0% |
| 3255785 | 129.1.1.15 ↗ | alpha arrays › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › P5CR_dimer | 0.67 | 46.0 | 3.62e-01 | 74.5% | 31.8% |
| 3778380 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.66 | 49.0 | 4.31e-01 | 80.9% | 54.3% |
| 4991000 | 3651.1.1.0 ↗ | alpha bundles › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain | 0.66 | 56.0 | 4.80e-01 | 95.7% | 70.7% |
| 3737108 | 509.1.1.1 ↗ | alpha bundles › PAH2 domain › PAH2 domain › PAH2 domain › PAH | 0.66 | 55.0 | 5.00e-01 | 97.9% | 73.8% |
| 3587801 | 2004.1.1.554 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › UvrB_inter | 0.65 | 56.0 | 3.33e-01 | 100.0% | 25.6% |
| 3730259 | 509.1.1.1 ↗ | alpha bundles › PAH2 domain › PAH2 domain › PAH2 domain › PAH | 0.65 | 54.0 | 4.92e-01 | 95.7% | 72.3% |
| 3442087 | 108.1.1.23 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand › RST | 0.65 | 54.0 | 4.99e-01 | 100.0% | 71.9% |
| 5079848 | 5041.1.1.0 ↗ | extended segments › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C | 0.65 | 44.0 | 4.05e-01 | 70.2% | 55.0% |
| 3908235 | 108.1.1.148 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand › DMAP_binding | 0.65 | 52.0 | 4.49e-01 | 93.6% | 57.5% |
| 3229130 | 101.1.1.1 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain | 0.65 | 44.0 | 4.33e-01 | 72.3% | 66.0% |
| 5060617 | 3651.1.1.0 ↗ | alpha bundles › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain | 0.64 | 54.0 | 4.10e-01 | 95.7% | 89.6% |
| 5066226 | 632.11.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like | 0.64 | 54.0 | 4.95e-01 | 100.0% | 75.4% |
| 3730715 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.63 | 46.0 | 4.43e-01 | 78.7% | 83.6% |
| 3558099 | 509.1.1.0 ↗ | alpha bundles › PAH2 domain › PAH2 domain › PAH2 domain | 0.63 | 54.0 | 4.57e-01 | 97.9% | 57.5% |
| 3318879 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.62 | 46.0 | 4.17e-01 | 80.9% | 60.0% |
| 3671293 | 509.1.1.12 ↗ | alpha bundles › PAH2 domain › PAH2 domain › PAH2 domain › PF25972 | 0.62 | 53.0 | 4.67e-01 | 97.9% | 67.1% |
| 3937183 | 192.29.1.0 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) | 0.59 | 50.0 | 3.60e-01 | 95.7% | 70.3% |
| 3487860 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.56 | 47.0 | 3.85e-01 | 95.7% | 52.2% |
| 3304111 | 185.1.1.3 ↗ | alpha superhelices › Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin-like › Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin/Protein HNS-dependent expression A HdeA › Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin › Hydrophob_seed | 0.54 | 38.0 | 3.39e-01 | 76.6% | 50.0% |
| 3271267 | 568.1.1.0 ↗ | few secondary structure elements › p8-MTCP1-related › p8-MTCP1-related › p8-MTCP1-related | 0.52 | 44.0 | 4.10e-01 | 100.0% | 91.7% |