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BML_08042016_6_5m_scaffold_3_prodigal-single.1__X__X__00112

Bact-Vir

BML_08042016_6_5m_scaffold_3_prodigal-single.1__X__X__00112

Identity

Kingdom:
phage

Quality

91.9 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-67
PDB
Domain cluster: representative
CATH (17)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2qrdB01 2.20.25.290 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.58 32.0 3.90e-01 80.0% 91.9%
1o9aA01 2.10.70.10 Mainly Beta › Ribbon › Complement Module; domain 1 › Complement Module, domain 1 0.58 34.0 3.93e-01 87.7% 86.4%
5aa5E00 1.10.645.10 Mainly Alpha › Orthogonal Bundle › Cytochrome-c3 Hydrogenase; chain B › Cytochrome-c3 Hydrogenase, chain B 0.58 48.0 2.89e-01 98.5% 80.0%
4d10F01 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.57 45.0 3.34e-01 100.0% 31.8%
3c30A02 2.20.20.100 Mainly Beta › Single Sheet › Anthopleurin-A › LuxQ periplasmic domain, C-terminal subdomain 0.57 36.0 3.62e-01 100.0% 64.1%
1wv4B00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.57 47.0 3.66e-01 95.4% 96.8%
1o97D01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.56 39.0 2.85e-01 73.8% 68.8%
1t9mA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.55 45.0 3.26e-01 95.4% 95.1%
1ms9A01 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.54 45.0 2.88e-01 96.9% 98.4%
6qcbA00 2.40.70.10 Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases 0.54 30.0 2.72e-01 72.3% 33.0%
1n7vA01 2.105.10.10 Mainly Beta › 3 Propeller › Pseudo beta propeller › Pseudo beta propeller 0.51 42.0 3.22e-01 98.5% 85.9%
3jvvA01 3.30.450.90 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.51 44.0 3.81e-01 96.9% 97.0%
1v7pB00 3.10.100.10 Alpha Beta › Roll › Mannose-Binding Protein A; Chain A › Mannose-Binding Protein A, subunit A 0.51 36.0 2.97e-01 76.9% 80.3%
4kqdB00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.50 44.0 3.66e-01 98.5% 76.7%
3c8cB01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.50 42.0 3.51e-01 100.0% 82.7%
4hh2B03 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.50 44.0 3.83e-01 100.0% 72.0%
2va0A00 3.30.450.160 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.50 43.0 3.75e-01 100.0% 63.6%
ECOD (36)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3838661 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.82 53.0 4.68e-01 100.0% 47.8%
3387865 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.72 46.0 4.07e-01 100.0% 45.3%
3267300 223.2.1.7 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › SRP-alpha_N 0.69 45.0 3.59e-01 100.0% 33.1%
3238497 295.1.1.3 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › PurA 0.68 34.0 3.57e-01 78.5% 50.0%
5001058 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.65 46.0 3.60e-01 100.0% 35.0%
3993494 5.1.5.42 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › RMC1_N 0.64 44.0 2.88e-01 72.3% 41.4%
3237078 11.1.1.973 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Self-incomp_S1 0.64 30.0 2.87e-01 75.4% 35.4%
5076486 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.63 45.0 3.22e-01 100.0% 25.9%
3322492 5.1.4.550 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Kelch_FKB95 0.62 45.0 2.91e-01 76.9% 53.3%
5073989 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.62 47.0 3.65e-01 100.0% 37.9%
3707085 5.1.2.33 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › BNR_3 0.61 46.0 3.22e-01 81.5% 83.2%
4633844 223.1.1.72 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › GAPES2 0.61 41.0 2.87e-01 100.0% 20.0%
4942549 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.60 52.0 3.42e-01 98.5% 98.3%
5052577 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.59 45.0 3.62e-01 100.0% 41.5%
3435911 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.59 33.0 2.74e-01 96.9% 31.8%
5050683 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.58 44.0 3.59e-01 100.0% 43.2%
3181098 223.1.1.94 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS-like 0.57 45.0 3.97e-01 100.0% 57.9%
4957034 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.57 47.0 3.06e-01 98.5% 92.9%
3228051 295.1.1.3 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › PurA 0.56 42.0 4.26e-01 89.2% 80.0%
3719842 5.1.3.28 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › BNR_3 0.56 44.0 2.94e-01 89.2% 89.5%
3509056 221.13.1.0 ↗ a+b two layers › beta-Grasp › Mitochondrial calcium uniporter N-terminal domain › Mitochondrial calcium uniporter N-terminal domain 0.56 35.0 2.84e-01 90.8% 32.8%
3386548 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.55 42.0 3.70e-01 98.5% 54.0%
3338958 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.55 44.0 3.01e-01 93.8% 74.5%
3625576 3850.1.1.0 ↗ few secondary structure elements › Protein-only RNase P Zn-binding domain › Protein-only RNase P Zn-binding domain › Protein-only RNase P Zn-binding domain 0.54 38.0 4.01e-01 100.0% 81.7%
3967835 244.3.1.2 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › SufE/NifU › SufE/NifU › SufE 0.54 36.0 3.02e-01 70.8% 76.2%
4977349 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.54 48.0 3.63e-01 100.0% 56.8%
3601580 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.54 46.0 2.90e-01 100.0% 18.5%
5020997 2003.1.2.24 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.53 39.0 2.92e-01 80.0% 65.1%
3392243 223.2.1.19 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Intu_longin_1 0.53 48.0 3.68e-01 100.0% 57.9%
4951376 11.1.1.15 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PKD 0.53 32.0 3.07e-01 81.5% 50.0%
4188473 814.1.1.2 ↗ a+b two layers › Chorismate lyase › Chorismate lyase › Chorismate lyase › Chor_lyase 0.52 42.0 3.15e-01 89.2% 95.9%
3851316 223.2.1.19 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Intu_longin_1 0.52 46.0 3.41e-01 100.0% 51.2%
3492855 319.1.1.1 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.51 40.0 2.97e-01 95.4% 87.1%
3559155 1020.1.1.63 ↗ extended segments › Ezh2 N-terminal domain › Ezh2 N-terminal domain › Ezh2 N-terminal domain › CATSPERG_beta-prop 0.50 42.0 2.63e-01 100.0% 92.5%
3304346 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.50 28.0 2.80e-01 80.0% 47.1%
3927668 2007.1.2.4 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › ANF_receptor 0.50 39.0 2.81e-01 89.2% 47.9%