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BML_08042016_6_5m_scaffold_3_prodigal-single.1__X__X__00113
Bact-VirBML_08042016_6_5m_scaffold_3_prodigal-single.1__X__X__00113
Identity
- Kingdom:
- phage
Quality
88.2
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 27-77
Domain cluster:
representative
CATH (16)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3viqA00 | 6.10.140.1020 | Special › Helix non-globular › Helix Hairpins › | 0.74 | 30.0 | 2.20e-01 | 94.1% | 17.2% |
| 3clqA04 | 3.90.1700.10 | Alpha Beta › Alpha-Beta Complex › v583 fold › v583 domain like | 0.62 | 46.0 | 3.31e-01 | 84.3% | 95.8% |
| 7vufD01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.57 | 38.0 | 2.55e-01 | 70.6% | 49.3% |
| 2z1dA02 | 3.40.50.11740 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HypD, alpha/beta domain 2 | 0.57 | 41.0 | 2.95e-01 | 78.4% | 46.7% |
| 3wa7A00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.54 | 42.0 | 2.54e-01 | 94.1% | 81.2% |
| 8jx6A02 | 2.30.30.780 | Mainly Beta › Roll › SH3 type barrels. › | 0.54 | 44.0 | 3.61e-01 | 96.1% | 63.1% |
| 3kluA01 | 3.30.2220.30 | Alpha Beta › 2-Layer Sandwich › rbstp2171 › | 0.54 | 39.0 | 3.05e-01 | 78.4% | 85.5% |
| 3pieC05 | 2.170.260.40 | Mainly Beta › Beta Complex › paz domain › | 0.53 | 38.0 | 2.69e-01 | 76.5% | 31.1% |
| 3cnrB00 | 2.40.10.220 | Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains | 0.52 | 42.0 | 3.45e-01 | 88.2% | 57.0% |
| 4esbA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.52 | 36.0 | 3.03e-01 | 82.4% | 37.9% |
| 4dzdA02 | 3.30.70.1210 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Crispr-associated protein; domain 2 | 0.52 | 36.0 | 2.77e-01 | 72.5% | 31.7% |
| 4qmgC01 | 2.40.50.90 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.52 | 37.0 | 2.62e-01 | 76.5% | 83.6% |
| 6ncrB01 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.51 | 38.0 | 2.48e-01 | 80.4% | 36.1% |
| 2i9dA00 | 3.30.559.10 | Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain | 0.50 | 37.0 | 2.47e-01 | 80.4% | 44.6% |
| 1dpgA02 | 3.30.360.10 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 | 0.50 | 41.0 | 2.56e-01 | 92.2% | 81.6% |
| 1af5A00 | 3.10.28.10 | Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases | 0.50 | 35.0 | 2.78e-01 | 88.2% | 31.7% |
ECOD (10)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3478863 | 5001.1.1.1 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 | 0.60 | 43.0 | 2.56e-01 | 78.4% | 10.1% |
| 4595166 | 5076.2.1.0 ↗ | alpha complex topology › Mitochondrial ADP/ATP carrier-like › Putative sulfate permease CysZ › Putative sulfate permease CysZ | 0.56 | 41.0 | 2.70e-01 | 78.4% | 56.0% |
| 4033072 | 101.1.9.32 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › ANT | 0.54 | 38.0 | 3.23e-01 | 76.5% | 69.4% |
| 4027270 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.52 | 43.0 | 2.83e-01 | 96.1% | 39.2% |
| 4154380 | 232.1.1.2 ↗ | a+b duplicates or obligate multimers › Pentein › Pentein › Pentein › ADI | 0.52 | 36.0 | 2.19e-01 | 74.5% | 89.7% |
| 5053229 | 2004.1.1.119 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Gtr1_RagA | 0.52 | 40.0 | 3.01e-01 | 96.1% | 31.3% |
| 3290062 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.52 | 41.0 | 2.60e-01 | 90.2% | 88.4% |
| 1325196 | 304.51.1.3 ↗ | a+b two layers › Alpha-beta plaits › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR_assoc | 0.51 | 37.0 | 2.84e-01 | 80.4% | 69.2% |
| 4936364 | 2007.13.1.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Rossmann-like domains in magnesium chelatase catalytic subunit › Rossmann-like domains in magnesium chelatase catalytic subunit › CobN-Mg_chel | 0.51 | 41.0 | 2.78e-01 | 92.2% | 33.0% |
| 5027341 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.50 | 41.0 | 3.03e-01 | 100.0% | 51.9% |