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BML_08042016_6_5m_scaffold_3_prodigal-single.1__X__X__00142

Bact-Vir

BML_08042016_6_5m_scaffold_3_prodigal-single.1__X__X__00142

Identity

Kingdom:
phage

Quality

67.6 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 10-58
PDB
CATH (42)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4e1pA00 3.30.60.230 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › Lsr2, dimerisation domain 0.76 61.0 5.99e-01 100.0% 83.6%
1nrkA01 3.30.70.1630 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.74 50.0 4.02e-01 71.4% 72.2%
2c9oB02 2.40.50.360 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RuvBL1 DNA/RNA binding domain 0.69 47.0 3.67e-01 73.5% 46.0%
2uvaG01 1.20.1050.120 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.66 45.0 3.35e-01 77.6% 26.5%
4uy8X00 2.30.170.40 Mainly Beta › Roll › Ribosomal Protein L24e; Chain: T; › Ribosomal protein L28/L24 0.64 50.0 4.38e-01 87.8% 76.6%
2d9wA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.63 51.0 3.98e-01 91.8% 96.4%
4hqeA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 42.0 3.34e-01 71.4% 61.0%
3goxA02 3.30.60.130 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › 0.61 49.0 4.81e-01 91.8% 81.5%
2aw4Z00 4.10.830.30 Few Secondary Structures › Irregular › 30s Ribosomal Protein S14; Chain N › Ribosomal protein L31 0.60 46.0 4.21e-01 87.8% 85.7%
2cveA02 3.30.70.240 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.58 41.0 3.86e-01 79.6% 93.9%
4m7xA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.58 40.0 3.41e-01 75.5% 41.8%
2yxdA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.57 43.0 2.95e-01 93.9% 22.9%
1z1bA01 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.57 39.0 3.83e-01 75.5% 64.9%
1vq8Q00 2.30.30.70 Mainly Beta › Roll › SH3 type barrels. › Ribosomal protein L21 0.57 42.0 3.48e-01 83.7% 55.8%
1k8kA04 3.90.640.10 Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › ATPase, substrate binding domain, subdomain 4 0.57 39.0 3.25e-01 73.5% 77.2%
4hvmD02 3.30.559.30 Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Nonribosomal peptide synthetase, condensation domain 0.56 41.0 2.81e-01 81.6% 96.4%
3ezjA02 3.30.1370.120 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › 0.56 41.0 3.80e-01 83.7% 94.1%
2zihC00 1.10.3630.10 Mainly Alpha › Orthogonal Bundle › yeast vps74-n-term truncation variant fold › yeast vps74-n-term truncation variant domain like 0.56 38.0 2.40e-01 71.4% 53.0%
1ub9A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 38.0 3.07e-01 71.4% 60.0%
3mpxA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 44.0 3.60e-01 89.8% 83.5%
1h0hB01 3.30.70.20 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.55 39.0 2.86e-01 79.6% 78.0%
3l7wA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 37.0 3.01e-01 71.4% 64.8%
4bqhA00 3.90.550.10 Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.54 40.0 2.31e-01 81.6% 63.7%
2cs4A00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.54 41.0 3.46e-01 87.8% 60.0%
7sk7A01 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.54 37.0 2.45e-01 75.5% 95.7%
5i2cB01 3.30.2130.10 Alpha Beta › 2-Layer Sandwich › VC0802-like › VC0802-like 0.54 44.0 3.28e-01 100.0% 87.0%
5hn3A00 3.40.718.10 Alpha Beta › 3-Layer(aba) Sandwich › Isopropylmalate Dehydrogenase › Isopropylmalate Dehydrogenase 0.53 44.0 2.70e-01 100.0% 27.1%
1mhyD00 1.10.620.20 Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase, subunit A › Ribonucleotide Reductase, subunit A 0.52 40.0 2.37e-01 95.9% 9.4%
4ctaA02 3.30.70.2860 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.52 43.0 3.85e-01 98.0% 90.7%
5ucoA02 3.40.47.10 Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase 0.52 37.0 2.65e-01 77.6% 56.9%
2lezA00 3.30.2450.10 Alpha Beta › 2-Layer Sandwich › Secreted effector protein pipB2 fold › Secreted effector protein pipB2 0.52 36.0 2.78e-01 73.5% 75.8%
3elkA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 35.0 2.85e-01 71.4% 62.9%
4mbsA00 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.52 43.0 2.64e-01 100.0% 31.8%
2czrA02 3.90.79.30 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › TBP-interacting protein, C-terminal domain 0.51 41.0 3.26e-01 98.0% 90.8%
5wjpA01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.51 44.0 3.25e-01 100.0% 43.0%
4rpoA01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.51 38.0 3.12e-01 93.9% 52.5%
4wxaA00 3.30.310.50 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Alpha-D-phosphohexomutase, C-terminal domain 0.51 42.0 3.65e-01 100.0% 89.3%
2v4jB03 3.30.70.20 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.50 32.0 2.97e-01 77.6% 47.7%
5a4aA00 3.40.50.1110 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase 0.50 35.0 2.40e-01 75.5% 85.1%
4oo1I01 2.40.50.880 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.50 34.0 3.03e-01 71.4% 85.3%
1b24A01 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.50 35.0 2.91e-01 75.5% 74.7%
1dkqA02 3.40.50.1240 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphoglycerate mutase-like 0.50 36.0 2.82e-01 81.6% 60.5%
ECOD (62)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5053880 377.1.1.0 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.85 68.0 7.04e-01 91.8% 95.6%
5034882 4203.1.1.0 few secondary structure elements › HSP33 redox switch-like › HSP33 redox switch-like › HSP33 redox switch-like 0.84 69.0 7.15e-01 93.9% 97.8%
4120496 377.1.1.8 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › Ribosomal_S26e 0.79 60.0 5.28e-01 85.7% 60.0%
3307915 376.1.3.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.78 57.0 5.24e-01 79.6% 69.2%
2035461 3380.1.1.1 a+b duplicates or obligate multimers › Dimerization domain of Lsr2 › Dimerization domain of Lsr2 › Dimerization domain of Lsr2 › Lsr2 0.78 63.0 6.12e-01 100.0% 82.1%
3466575 376.1.3.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.76 61.0 5.55e-01 87.8% 67.7%
3969312 2.4.1.1 beta barrels › OB-fold › MOP-like › MOP-like › TOBE 0.75 50.0 4.40e-01 73.5% 48.6%
3237892 376.1.3.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.73 59.0 5.57e-01 93.9% 75.0%
3466706 3380.1.1.0 a+b duplicates or obligate multimers › Dimerization domain of Lsr2 › Dimerization domain of Lsr2 › Dimerization domain of Lsr2 0.72 44.0 5.09e-01 83.7% 100.0%
3265494 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.71 50.0 5.20e-01 75.5% 88.9%
3308238 376.1.2.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain 0.70 52.0 5.69e-01 81.6% 100.0%
2623930 4001.1.1.4 a+b duplicates or obligate multimers › a+b domain in cullin-like proteins › a+b domain in cullin-like proteins › a+b domain in cullin-like proteins › Cullin_AB 0.69 47.0 3.65e-01 77.6% 31.5%
3585355 376.1.1.72 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › EHMT1-2_CRR 0.69 56.0 4.49e-01 91.8% 88.0%
4946657 376.1.3.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.68 61.0 5.58e-01 100.0% 100.0%
147620 4232.1.1.1 few secondary structure elements › Ribosomal protein bL28-related › Ribosomal protein bL28-related › Ribosomal protein L28 › Ribosomal_L28 0.67 58.0 4.59e-01 95.9% 76.3%
3949921 191.1.1.0 alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain 0.66 46.0 3.49e-01 75.5% 56.2%
4992769 101.1.2.30 alpha arrays › HTH › HTH › winged helix domain › TrmB 0.66 45.0 3.42e-01 71.4% 55.5%
4293536 4232.1.1.0 few secondary structure elements › Ribosomal protein bL28-related › Ribosomal protein bL28-related › Ribosomal protein L28 0.65 49.0 4.89e-01 89.8% 82.0%
5079768 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.65 44.0 3.69e-01 71.4% 73.8%
5000498 896.1.1.1 a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Ribosomal_L38e 0.65 53.0 4.97e-01 91.8% 98.3%
3173979 2003.1.5.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases 0.64 45.0 2.64e-01 75.5% 8.5%
3902875 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.64 43.0 3.98e-01 77.6% 53.8%
4946781 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.63 46.0 4.74e-01 79.6% 84.4%
3727444 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.62 52.0 4.08e-01 98.0% 82.7%
5043001 101.1.2.135 alpha arrays › HTH › HTH › winged helix domain › MarR_2 0.62 42.0 3.31e-01 71.4% 57.1%
3269923 101.1.21.1 alpha arrays › HTH › HTH › HTH in T7 RNA polymerase › RPOL_N 0.60 42.0 2.73e-01 73.5% 57.8%
3813831 226.1.1.16 a+b two layers › POZ domain › POZ domain › POZ domain › Auxin_inducible 0.60 51.0 4.30e-01 95.9% 62.4%
5072315 2.4.1.1 beta barrels › OB-fold › MOP-like › MOP-like › TOBE 0.59 50.0 3.74e-01 93.9% 49.6%
4955182 101.1.2.143 alpha arrays › HTH › HTH › winged helix domain › HTH_34 0.59 40.0 3.26e-01 71.4% 66.0%
3482807 277.1.1.0 a+b two layers › PX domain › PX domain › PX domain 0.59 42.0 3.34e-01 77.6% 76.9%
4340770 4.1.1.248 beta barrels › SH3 › SH3 › SH3 › CABIT 0.59 46.0 3.80e-01 89.8% 67.4%
5010964 101.1.2.143 alpha arrays › HTH › HTH › winged helix domain › HTH_34 0.59 40.0 3.25e-01 71.4% 61.0%
5011597 101.1.2.143 alpha arrays › HTH › HTH › winged helix domain › HTH_34 0.59 40.0 3.24e-01 71.4% 61.6%
4996670 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.58 39.0 3.31e-01 71.4% 76.7%
4934807 1.1.3.2 beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin 0.58 36.0 3.12e-01 71.4% 37.3%
5030555 3433.1.1.0 a+b duplicates or obligate multimers › ParB dimerization domain › ParB dimerization domain › Plasmid-encoded ParB dimerization domain 0.58 39.0 4.23e-01 87.8% 87.5%
3633420 316.1.1.0 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase 0.58 45.0 3.01e-01 89.8% 64.5%
4329890 101.1.2.31 alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha 0.57 39.0 2.88e-01 73.5% 45.3%
3550551 101.1.21.1 alpha arrays › HTH › HTH › HTH in T7 RNA polymerase › RPOL_N 0.57 39.0 2.53e-01 73.5% 56.5%
3900298 101.1.21.1 alpha arrays › HTH › HTH › HTH in T7 RNA polymerase › RPOL_N 0.57 39.0 2.53e-01 73.5% 58.4%
5071269 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.57 39.0 2.58e-01 71.4% 34.3%
5040376 101.1.2.136 alpha arrays › HTH › HTH › winged helix domain › HTH_20 0.57 39.0 3.03e-01 71.4% 63.5%
4940950 101.1.2.143 alpha arrays › HTH › HTH › winged helix domain › HTH_34 0.56 38.0 3.33e-01 71.4% 86.3%
3250105 2004.1.1.19 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Ras 0.56 39.0 2.62e-01 75.5% 85.0%
3868175 101.1.21.1 alpha arrays › HTH › HTH › HTH in T7 RNA polymerase › RPOL_N 0.56 39.0 2.26e-01 73.5% 29.2%
4970612 2003.1.5.82 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_31 0.56 43.0 2.79e-01 93.9% 18.3%
4946524 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.55 38.0 3.00e-01 71.4% 55.5%
3474254 316.1.1.0 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase 0.55 41.0 3.15e-01 85.7% 31.9%
3281159 4107.1.1.1 alpha arrays › Jann2411-like › Jann2411-like › Jann2411-like › ABATE,zf-CGNR 0.54 41.0 2.92e-01 100.0% 25.5%
4959073 101.1.2.271 alpha arrays › HTH › HTH › winged helix domain › B-block_TFIIIC 0.54 37.0 2.88e-01 71.4% 52.5%
5076094 376.1.3.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.54 46.0 4.36e-01 100.0% 98.3%
4929009 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.53 43.0 3.23e-01 91.8% 56.2%
5039582 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.53 36.0 2.97e-01 73.5% 70.5%
4019993 101.1.21.1 alpha arrays › HTH › HTH › HTH in T7 RNA polymerase › RPOL_N 0.52 36.0 2.38e-01 77.6% 60.4%
3973207 7523.1.1.15 a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › LysR_substrate 0.51 40.0 3.26e-01 95.9% 56.4%
3712842 304.48.1.0 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like 0.51 34.0 2.48e-01 73.5% 63.9%
5052305 2004.1.1.119 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Gtr1_RagA 0.51 42.0 2.90e-01 93.9% 78.1%
5052491 101.1.2.31 alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha 0.50 37.0 2.60e-01 100.0% 22.1%
5078945 1.1.3.0 beta barrels › cradle loop barrel › RIFT-related › AbrB 0.50 32.0 3.02e-01 71.4% 47.7%
3714275 868.1.1.0 a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related 0.50 34.0 2.20e-01 73.5% 83.3%
3271747 3008.1.1.0 a+b three layers › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 0.50 36.0 2.82e-01 79.6% 68.0%
4134039 304.162.1.1 a+b two layers › Alpha-beta plaits › Competence or damage-inducible protein CinA middle domain › Competence or damage-inducible protein CinA middle domain › CinA_KH 0.50 42.0 3.74e-01 98.0% 92.0%