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BML_08042016_6_5m_scaffold_3_prodigal-single.1__X__X__00155
Bact-VirBML_08042016_6_5m_scaffold_3_prodigal-single.1__X__X__00155
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 39-78
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF11246.15 best | Phage_gp53 | 32.6 | 9.40e-08 | 100.0% | 19.0% |
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3tmpA01 | 3.90.70.80 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › | 0.78 | 58.0 | 3.86e-01 | 80.0% | 38.0% |
| 6oinA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.55 | 40.0 | 3.75e-01 | 100.0% | 74.6% |
| 6uglB02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.55 | 39.0 | 3.82e-01 | 100.0% | 81.0% |
| 4bx9C00 | 1.10.150.780 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Vps16, C-terminal region | 0.52 | 40.0 | 3.27e-01 | 97.5% | 57.9% |
ECOD (15)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5004560 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.90 | 82.0 | 7.28e-01 | 100.0% | 72.7% |
| 3979943 | 101.15.1.3 ↗ | alpha arrays › HTH › LysM domain › LysM domain › Phage_tail_X | 0.88 | 73.0 | 6.71e-01 | 90.0% | 72.0% |
| 4995817 | 101.15.1.4 ↗ | alpha arrays › HTH › LysM domain › LysM domain › Phage_gp53 | 0.87 | 75.0 | 6.27e-01 | 100.0% | 60.0% |
| 3955076 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.86 | 72.0 | 6.93e-01 | 92.5% | 82.2% |
| 3585157 | 101.15.1.0 ↗ | alpha arrays › HTH › LysM domain › LysM domain | 0.81 | 62.0 | 5.31e-01 | 85.0% | 52.3% |
| 2809236 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.80 | 69.0 | 6.04e-01 | 100.0% | 67.7% |
| 3340381 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.78 | 62.0 | 6.46e-01 | 87.5% | 100.0% |
| 3963519 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.72 | 61.0 | 5.30e-01 | 100.0% | 64.6% |
| 4318089 | 101.1.2.92 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_11 | 0.65 | 55.0 | 4.90e-01 | 100.0% | 75.0% |
| 4449179 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.64 | 55.0 | 4.91e-01 | 100.0% | 75.0% |
| 4040211 | 101.1.2.89 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_DeoR | 0.64 | 55.0 | 4.90e-01 | 100.0% | 76.7% |
| 3509611 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.64 | 54.0 | 4.90e-01 | 100.0% | 70.9% |
| 3937075 | 101.1.1.62 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_24 | 0.56 | 40.0 | 3.90e-01 | 92.5% | 70.9% |
| 3084 | 103.1.1.27 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › UBA_7 | 0.55 | 39.0 | 3.71e-01 | 72.5% | 80.4% |
| 4666406 | 101.1.9.8 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › IF2_N | 0.53 | 40.0 | 3.63e-01 | 90.0% | 58.5% |