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BML_08042016_6_5m_scaffold_3_prodigal-single.1__X__X__00167
Bact-VirBML_08042016_6_5m_scaffold_3_prodigal-single.1__X__X__00167
Identity
- Kingdom:
- phage
Quality
86.7
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 194-296_386-471
Domain cluster:
rep: NC_006883.2__YP_214524.1__PSSM2_293__00293__D60-268
CATH (54)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1ee6A00 | 2.160.20.10 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like | 0.82 | 68.0 | 6.74e-01 | 99.5% | 81.7% |
| 1idjA00 | 2.160.20.10 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like | 0.80 | 70.0 | 5.49e-01 | 100.0% | 47.6% |
| 1o88A00 | 2.160.20.10 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like | 0.77 | 67.0 | 5.33e-01 | 100.0% | 48.6% |
| 3gq8A01 | 2.160.20.10 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like | 0.77 | 74.0 | 5.36e-01 | 100.0% | 42.9% |
| 5jlvC00 | 2.160.20.80 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › E3 ubiquitin-protein ligase SopA | 0.76 | 40.0 | 5.59e-01 | 92.1% | 100.0% |
| 3eqnA02 | 2.160.20.10 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like | 0.76 | 72.0 | 5.65e-01 | 100.0% | 66.0% |
| 4nk6A00 | 2.160.20.10 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like | 0.75 | 67.0 | 4.99e-01 | 100.0% | 41.0% |
| 3vmvA00 | 2.160.20.10 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like | 0.75 | 70.0 | 5.65e-01 | 100.0% | 56.2% |
| 4oj6C03 | 2.160.20.10 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like | 0.75 | 71.0 | 5.44e-01 | 100.0% | 57.8% |
| 7dmkA02 | 2.160.20.10 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like | 0.74 | 70.0 | 5.91e-01 | 100.0% | 65.9% |
| 1rmgA00 | 2.160.20.10 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like | 0.73 | 65.0 | 4.85e-01 | 100.0% | 41.2% |
| 4hwvB00 | 2.160.20.10 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like | 0.73 | 70.0 | 5.01e-01 | 100.0% | 59.3% |
| 3b4nA02 | 2.160.20.10 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like | 0.73 | 65.0 | 6.10e-01 | 100.0% | 77.9% |
| 1jtaA00 | 2.160.20.10 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like | 0.73 | 70.0 | 5.47e-01 | 100.0% | 59.8% |
| 1h80B00 | 2.160.20.10 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like | 0.73 | 69.0 | 5.17e-01 | 100.0% | 44.4% |
| 7chuA01 | 2.160.20.10 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like | 0.73 | 70.0 | 5.45e-01 | 100.0% | 53.3% |
| 2vbkA00 | 2.160.20.10 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like | 0.72 | 69.0 | 4.86e-01 | 100.0% | 36.8% |
| 1bheA00 | 2.160.20.10 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like | 0.72 | 69.0 | 5.34e-01 | 100.0% | 56.1% |
| 2bm5B00 | 2.160.20.80 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › E3 ubiquitin-protein ligase SopA | 0.72 | 50.0 | 5.19e-01 | 100.0% | 74.4% |
| 1pxzA00 | 2.160.20.10 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like | 0.72 | 68.0 | 5.39e-01 | 100.0% | 53.8% |
| 3grhA00 | 2.160.20.10 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like | 0.72 | 69.0 | 5.23e-01 | 100.0% | 65.2% |
| 7b7aA01 | 2.160.20.10 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like | 0.72 | 69.0 | 5.31e-01 | 100.0% | 49.9% |
| 3jurA00 | 2.160.20.10 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like | 0.72 | 69.0 | 5.05e-01 | 100.0% | 42.6% |
| 2uvfB02 | 2.160.20.10 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like | 0.72 | 68.0 | 5.01e-01 | 100.0% | 51.7% |
| 2b0rB00 | 2.160.20.70 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › | 0.71 | 48.0 | 5.23e-01 | 100.0% | 81.0% |
| 2inuA00 | 2.160.20.10 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like | 0.71 | 68.0 | 5.17e-01 | 100.0% | 55.1% |
| 3zscA00 | 2.160.20.10 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like | 0.71 | 68.0 | 5.51e-01 | 100.0% | 57.8% |
| 1ru4A00 | 2.160.20.10 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like | 0.71 | 68.0 | 5.16e-01 | 100.0% | 52.5% |
| 1vblA00 | 2.160.20.10 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like | 0.71 | 68.0 | 5.08e-01 | 100.0% | 49.0% |
| 7o7aA01 | 2.160.20.10 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like | 0.71 | 67.0 | 5.13e-01 | 100.0% | 51.6% |
| 8tmsA01 | 2.160.20.10 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like | 0.71 | 67.0 | 5.79e-01 | 100.0% | 84.3% |
| 1hg8A00 | 2.160.20.10 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like | 0.70 | 67.0 | 5.33e-01 | 100.0% | 56.4% |
| 1dbgA00 | 2.160.20.10 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like | 0.70 | 67.0 | 4.82e-01 | 100.0% | 41.8% |
| 3n6zA01 | 2.160.20.110 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › | 0.70 | 66.0 | 5.80e-01 | 100.0% | 80.4% |
| 2f3lA00 | 2.160.20.80 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › E3 ubiquitin-protein ligase SopA | 0.70 | 48.0 | 5.63e-01 | 95.2% | 99.2% |
| 2xt2B00 | 2.160.20.80 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › E3 ubiquitin-protein ligase SopA | 0.69 | 50.0 | 4.95e-01 | 100.0% | 71.1% |
| 3riqA00 | 2.160.20.20 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › | 0.69 | 65.0 | 4.57e-01 | 100.0% | 36.6% |
| 3bh7B01 | 2.160.20.70 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › | 0.69 | 50.0 | 5.01e-01 | 97.9% | 73.1% |
| 1ogoX02 | 2.160.20.10 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like | 0.68 | 64.0 | 5.08e-01 | 100.0% | 54.8% |
| 1x0cA02 | 2.160.20.10 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like | 0.68 | 64.0 | 5.04e-01 | 100.0% | 56.4% |
| 5gkdA02 | 2.160.20.10 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like | 0.68 | 64.0 | 5.48e-01 | 100.0% | 67.4% |
| 1gq8A00 | 2.160.20.10 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like | 0.68 | 65.0 | 5.31e-01 | 100.0% | 59.4% |
| 1dabA00 | 2.160.20.20 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › | 0.68 | 64.0 | 4.49e-01 | 100.0% | 38.8% |
| 1qjvA00 | 2.160.20.10 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like | 0.67 | 63.0 | 5.10e-01 | 100.0% | 59.4% |
| 2yuhA01 | 2.160.20.70 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › | 0.67 | 49.0 | 5.13e-01 | 97.9% | 82.0% |
| 1k4zA00 | 2.160.20.70 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › | 0.66 | 47.0 | 5.06e-01 | 97.9% | 86.0% |
| 4i84A00 | 2.160.20.10 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like | 0.63 | 59.0 | 5.00e-01 | 100.0% | 73.3% |
| 1rwrA00 | 2.160.20.10 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like | 0.63 | 58.0 | 4.97e-01 | 100.0% | 85.2% |
| 1k8fA00 | 2.160.20.70 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › | 0.62 | 47.0 | 5.11e-01 | 97.9% | 94.3% |
| 2odlA00 | 2.160.20.10 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like | 0.62 | 58.0 | 4.57e-01 | 100.0% | 59.1% |
| 3ak5D02 | 2.160.20.20 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › | 0.62 | 56.0 | 3.71e-01 | 100.0% | 26.2% |
| 4w8qA00 | 2.160.20.10 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like | 0.61 | 57.0 | 5.29e-01 | 100.0% | 88.0% |
| 3szeA02 | 2.160.20.20 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › | 0.61 | 57.0 | 3.88e-01 | 100.0% | 30.9% |
| 1igrA01 | 3.80.20.20 | Alpha Beta › Alpha-Beta Horseshoe › 24 nucleotide stem-loop, u2 snrnp hairpin iv. U2 a'; Chain A › Receptor L-domain | 0.57 | 48.0 | 4.87e-01 | 98.4% | 91.3% |
ECOD (80)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5006606 | 207.2.1.13 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › NosD | 0.89 | 66.0 | 6.25e-01 | 100.0% | 65.5% |
| 5080165 | 207.2.1.22 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Beta_helix | 0.88 | 69.0 | 5.72e-01 | 100.0% | 50.0% |
| 5021650 | 207.2.1.13 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › NosD | 0.88 | 69.0 | 5.73e-01 | 100.0% | 51.2% |
| 4982197 | 207.2.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like | 0.88 | 66.0 | 5.03e-01 | 100.0% | 37.7% |
| 5035218 | 207.2.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like | 0.87 | 70.0 | 6.48e-01 | 100.0% | 67.7% |
| 4987751 | 207.2.1.13 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › NosD | 0.87 | 67.0 | 5.53e-01 | 100.0% | 48.1% |
| 5032606 | 207.2.1.13 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › NosD | 0.87 | 71.0 | 5.59e-01 | 100.0% | 45.0% |
| 4981313 | 207.2.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like | 0.87 | 68.0 | 6.15e-01 | 100.0% | 62.9% |
| 4970433 | 207.2.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like | 0.86 | 66.0 | 5.51e-01 | 100.0% | 49.3% |
| 5062061 | 207.2.1.13 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › NosD | 0.86 | 75.0 | 6.80e-01 | 100.0% | 70.4% |
| 4982095 | 207.2.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like | 0.86 | 69.0 | 4.60e-01 | 100.0% | 24.6% |
| 3775495 | 207.2.1.22 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Beta_helix | 0.86 | 71.0 | 6.27e-01 | 100.0% | 62.3% |
| 3716497 | 207.2.1.70 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › NosD, Beta_helix | 0.85 | 67.0 | 4.64e-01 | 100.0% | 28.6% |
| 5055582 | 207.2.1.13 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › NosD | 0.84 | 68.0 | 5.93e-01 | 100.0% | 58.9% |
| 3923083 | 207.2.1.22 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Beta_helix | 0.84 | 67.0 | 6.27e-01 | 100.0% | 69.5% |
| 3873508 | 207.2.1.70 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › NosD, Beta_helix | 0.84 | 66.0 | 4.71e-01 | 100.0% | 30.6% |
| 3245719 | 207.2.1.22 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Beta_helix | 0.84 | 66.0 | 4.94e-01 | 100.0% | 36.2% |
| 5050079 | 207.2.1.22 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Beta_helix | 0.83 | 65.0 | 5.97e-01 | 100.0% | 64.3% |
| 4994782 | 207.2.1.22 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Beta_helix | 0.83 | 63.0 | 4.49e-01 | 100.0% | 29.4% |
| 4944589 | 207.2.1.22 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Beta_helix | 0.83 | 64.0 | 5.97e-01 | 100.0% | 65.7% |
| 3572033 | 207.2.1.70 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › NosD, Beta_helix | 0.82 | 72.0 | 5.51e-01 | 100.0% | 44.4% |
| 4554798 | 207.2.1.9 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Pectate_lyase | 0.82 | 68.0 | 6.53e-01 | 100.0% | 76.7% |
| 4982073 | 207.2.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like | 0.81 | 66.0 | 5.34e-01 | 100.0% | 47.5% |
| 3708824 | 207.2.1.22 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Beta_helix | 0.81 | 71.0 | 5.90e-01 | 100.0% | 56.9% |
| 5065587 | 207.2.1.13 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › NosD | 0.81 | 66.0 | 5.10e-01 | 100.0% | 42.1% |
| 3905958 | 208.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes | 0.81 | 44.0 | 5.23e-01 | 98.9% | 75.6% |
| 5022167 | 207.2.1.13 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › NosD | 0.80 | 66.0 | 5.16e-01 | 100.0% | 43.8% |
| 4942767 | 207.2.1.22 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Beta_helix | 0.80 | 66.0 | 5.23e-01 | 100.0% | 45.4% |
| 5052329 | 207.2.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like | 0.80 | 57.0 | 6.22e-01 | 97.4% | 85.6% |
| 2082632 | 207.2.1.5 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Adeno_E1B_55K | 0.80 | 69.0 | 5.50e-01 | 100.0% | 49.3% |
| 4955691 | 207.2.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like | 0.80 | 70.0 | 6.07e-01 | 100.0% | 63.3% |
| 5061985 | 207.2.1.22 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Beta_helix | 0.79 | 66.0 | 5.29e-01 | 100.0% | 47.5% |
| 5026984 | 207.2.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like | 0.79 | 64.0 | 4.73e-01 | 100.0% | 35.7% |
| 3718364 | 207.2.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like | 0.79 | 69.0 | 5.24e-01 | 100.0% | 42.7% |
| 3717417 | 207.2.1.22 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Beta_helix | 0.79 | 66.0 | 6.01e-01 | 100.0% | 68.3% |
| 4014880 | 207.2.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like | 0.77 | 71.0 | 5.48e-01 | 100.0% | 48.0% |
| 3252135 | 207.2.1.70 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › NosD, Beta_helix | 0.77 | 67.0 | 4.85e-01 | 100.0% | 36.8% |
| 3256107 | 207.2.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like | 0.77 | 65.0 | 5.29e-01 | 100.0% | 50.6% |
| 3502757 | 207.2.1.22 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Beta_helix | 0.76 | 73.0 | 5.42e-01 | 100.0% | 44.4% |
| 5016480 | 207.2.1.22 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Beta_helix | 0.76 | 65.0 | 4.24e-01 | 100.0% | 24.0% |
| 5039434 | 207.2.1.22 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Beta_helix | 0.75 | 72.0 | 5.36e-01 | 100.0% | 45.4% |
| 4014339 | 207.2.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like | 0.74 | 67.0 | 5.68e-01 | 100.0% | 61.0% |
| 4982332 | 207.2.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like | 0.74 | 64.0 | 5.54e-01 | 100.0% | 61.5% |
| 3607948 | 207.2.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like | 0.74 | 68.0 | 5.40e-01 | 100.0% | 52.8% |
| 3338830 | 207.2.1.4 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Pectinesterase | 0.73 | 67.0 | 6.05e-01 | 100.0% | 73.1% |
| 3264625 | 207.2.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like | 0.73 | 47.0 | 4.72e-01 | 100.0% | 63.7% |
| 1109309 | 207.2.1.3 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Pectate_lyase_4 | 0.73 | 70.0 | 5.03e-01 | 100.0% | 60.3% |
| 3834510 | 207.2.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Glyco_hydro_28 | 0.73 | 67.0 | 5.51e-01 | 100.0% | 56.9% |
| 3646146 | 207.2.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Glyco_hydro_28 | 0.73 | 68.0 | 5.09e-01 | 100.0% | 43.9% |
| 5031536 | 207.2.1.13 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › NosD | 0.73 | 69.0 | 5.23e-01 | 100.0% | 47.4% |
| 4383909 | 207.2.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Glyco_hydro_28 | 0.73 | 70.0 | 5.40e-01 | 100.0% | 51.5% |
| 3903674 | 207.2.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like | 0.73 | 47.0 | 4.35e-01 | 100.0% | 53.0% |
| 5042805 | 207.2.1.13 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › NosD | 0.72 | 69.0 | 4.61e-01 | 100.0% | 34.1% |
| 3648137 | 207.2.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Glyco_hydro_28 | 0.72 | 67.0 | 5.23e-01 | 100.0% | 49.7% |
| 4952565 | 207.2.1.22 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Beta_helix | 0.72 | 69.0 | 5.69e-01 | 100.0% | 61.9% |
| 3455716 | 207.2.1.2 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Glyco_hydro_28,Pectate_lyase_3 | 0.72 | 69.0 | 5.44e-01 | 100.0% | 55.1% |
| 4167706 | 207.2.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Glyco_hydro_28 | 0.71 | 67.0 | 5.03e-01 | 100.0% | 45.4% |
| 4968915 | 207.2.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like | 0.71 | 66.0 | 4.92e-01 | 100.0% | 43.3% |
| 3260502 | 207.2.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like | 0.71 | 60.0 | 5.08e-01 | 100.0% | 56.6% |
| 5026671 | 207.2.1.22 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Beta_helix | 0.70 | 67.0 | 5.82e-01 | 100.0% | 75.2% |
| 3718873 | 207.2.1.52 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like | 0.70 | 66.0 | 4.93e-01 | 100.0% | 44.8% |
| 3330906 | 207.2.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Glyco_hydro_28 | 0.70 | 65.0 | 5.79e-01 | 97.9% | 86.9% |
| 4104747 | 207.2.1.20 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Pectate_lyase_3 | 0.70 | 67.0 | 5.02e-01 | 100.0% | 62.2% |
| 4211588 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.70 | 67.0 | 4.84e-01 | 100.0% | 66.0% |
| 3689334 | 207.2.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Glyco_hydro_28 | 0.69 | 65.0 | 4.92e-01 | 100.0% | 49.5% |
| 3546698 | 207.6.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Serralysin-like metalloprotease-C › Serralysin-like metalloprotease-C | 0.69 | 51.0 | 5.53e-01 | 100.0% | 90.0% |
| 4952564 | 207.2.1.22 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Beta_helix | 0.69 | 66.0 | 5.30e-01 | 100.0% | 61.5% |
| 4944592 | 207.2.1.13 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › NosD | 0.69 | 66.0 | 5.32e-01 | 100.0% | 57.3% |
| 5062670 | 207.2.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like | 0.68 | 65.0 | 5.53e-01 | 100.0% | 69.0% |
| 3428314 | 207.2.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Glyco_hydro_28 | 0.67 | 64.0 | 5.48e-01 | 100.0% | 69.5% |
| 3921234 | 207.2.1.70 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › NosD, Beta_helix | 0.67 | 64.0 | 5.13e-01 | 100.0% | 57.4% |
| 3335252 | 207.2.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Glyco_hydro_28 | 0.65 | 59.0 | 5.88e-01 | 96.8% | 96.9% |
| 4884477 | 207.2.1.4 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Pectinesterase | 0.64 | 59.0 | 5.78e-01 | 97.4% | 95.5% |
| 5001023 | 207.2.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like | 0.64 | 53.0 | 4.21e-01 | 100.0% | 46.6% |
| 3833435 | 207.2.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like | 0.63 | 59.0 | 4.22e-01 | 100.0% | 62.0% |
| 5078382 | 207.8.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Stabilizer of iron transporter sufD › Stabilizer of iron transporter sufD › SUFBD | 0.62 | 56.0 | 4.77e-01 | 96.8% | 96.1% |
| 2643562 | 207.2.1.15 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › TPS | 0.61 | 57.0 | 5.26e-01 | 100.0% | 85.9% |
| 3254341 | 207.2.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like | 0.61 | 49.0 | 4.32e-01 | 100.0% | 59.6% |
| 4333063 | 207.8.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Stabilizer of iron transporter sufD › Stabilizer of iron transporter sufD › SUFBD | 0.59 | 55.0 | 4.54e-01 | 100.0% | 78.5% |
| 3422947 | 207.8.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Stabilizer of iron transporter sufD › Stabilizer of iron transporter sufD › SUFBD | 0.59 | 54.0 | 4.15e-01 | 100.0% | 65.6% |
D2
high
residues 309-382
Domain cluster:
rep: rifoxya1_full_scaffold_1_prodigal-single.1__X__X__00171__D444-515
CATH (35)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2wssA01 | 2.40.30.20 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › | 0.76 | 55.0 | 5.13e-01 | 81.1% | 61.3% |
| 2derA03 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.75 | 66.0 | 6.24e-01 | 97.3% | 96.6% |
| 6oqrA01 | 2.40.30.20 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › | 0.74 | 54.0 | 5.05e-01 | 81.1% | 63.3% |
| 3f3bA00 | 2.40.10.370 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Protein of unknown function DUF3599 | 0.70 | 53.0 | 4.59e-01 | 81.1% | 87.0% |
| 1oruA00 | 2.40.33.20 | Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › PK beta-barrel domain-like | 0.67 | 50.0 | 3.82e-01 | 81.1% | 64.6% |
| 3isxA02 | 2.40.30.40 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Peptidase M42, domain 2 | 0.67 | 49.0 | 4.62e-01 | 78.4% | 87.6% |
| 1fx0B01 | 2.40.10.170 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.67 | 49.0 | 4.89e-01 | 81.1% | 86.1% |
| 1vloA04 | 2.40.30.110 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Aminomethyltransferase beta-barrel domains | 0.65 | 55.0 | 5.19e-01 | 95.9% | 82.4% |
| 3ttgA00 | 3.30.1360.120 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Probable tRNA modification gtpase trme; domain 1 | 0.64 | 53.0 | 3.50e-01 | 94.6% | 34.1% |
| 4r8tB02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.61 | 45.0 | 4.61e-01 | 79.7% | 93.2% |
| 4mb7A01 | 3.20.190.10 | Alpha Beta › Alpha-Beta Barrel › N-terminal domain of MutM-like DNA repair proteins › MutM-like, N-terminal | 0.61 | 48.0 | 4.08e-01 | 86.5% | 82.5% |
| 3jb9F00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.61 | 42.0 | 4.14e-01 | 73.0% | 90.2% |
| 4c92B00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.59 | 40.0 | 3.63e-01 | 70.3% | 68.6% |
| 2qtlA02 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.59 | 41.0 | 3.71e-01 | 74.3% | 57.0% |
| 2p84A02 | 2.30.30.290 | Mainly Beta › Roll › SH3 type barrels. › YopX-like domains | 0.59 | 40.0 | 4.07e-01 | 70.3% | 78.1% |
| 1ts9A00 | 2.30.30.210 | Mainly Beta › Roll › SH3 type barrels. › Ribonuclease P/MRP, subunit p29 | 0.59 | 42.0 | 3.85e-01 | 75.7% | 71.4% |
| 1wdiA02 | 2.40.10.240 | Mainly Beta › Beta Barrel › Thrombin, subunit H › QueA-like | 0.59 | 43.0 | 4.36e-01 | 79.7% | 82.2% |
| 1n08A00 | 2.40.30.30 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Riboflavin kinase-like | 0.58 | 51.0 | 4.04e-01 | 100.0% | 59.7% |
| 1ee8A01 | 3.20.190.10 | Alpha Beta › Alpha-Beta Barrel › N-terminal domain of MutM-like DNA repair proteins › MutM-like, N-terminal | 0.57 | 45.0 | 3.88e-01 | 87.8% | 85.0% |
| 5a8iA00 | 2.60.200.20 | Mainly Beta › Sandwich › Tumour Suppressor Smad4 › | 0.55 | 44.0 | 3.77e-01 | 86.5% | 90.5% |
| 1uhtA00 | 2.60.200.20 | Mainly Beta › Sandwich › Tumour Suppressor Smad4 › | 0.54 | 44.0 | 3.77e-01 | 89.2% | 85.6% |
| 6xgqb01 | 2.40.300.10 | Mainly Beta › Beta Barrel › Virus Head Decoration Protein; Chain: A, › Head decoration protein D | 0.53 | 40.0 | 3.70e-01 | 79.7% | 76.3% |
| 2g1lA00 | 2.60.200.20 | Mainly Beta › Sandwich › Tumour Suppressor Smad4 › | 0.53 | 43.0 | 3.85e-01 | 87.8% | 99.0% |
| 4ggtB00 | 2.40.128.30 | Mainly Beta › Beta Barrel › Lipocalin › Avidin-like | 0.53 | 38.0 | 3.40e-01 | 75.7% | 79.2% |
| 4p25D01 | 2.40.510.10 | Mainly Beta › Beta Barrel › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Positive stranded ssRNA viruses | 0.52 | 38.0 | 2.96e-01 | 81.1% | 46.4% |
| 3vynA01 | 2.60.40.3780 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.52 | 40.0 | 3.80e-01 | 82.4% | 94.3% |
| 3un0A00 | 2.60.200.20 | Mainly Beta › Sandwich › Tumour Suppressor Smad4 › | 0.52 | 42.0 | 3.73e-01 | 89.2% | 94.5% |
| 2d7nA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 42.0 | 4.19e-01 | 89.2% | 98.7% |
| 2dmcA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 41.0 | 4.12e-01 | 91.9% | 100.0% |
| 4jonC00 | 2.60.200.20 | Mainly Beta › Sandwich › Tumour Suppressor Smad4 › | 0.51 | 41.0 | 3.51e-01 | 87.8% | 81.4% |
| 3qugA00 | 2.60.40.1850 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.51 | 41.0 | 3.65e-01 | 91.9% | 93.8% |
| 4d6wA03 | 2.30.29.130 | Mainly Beta › Roll › PH-domain like › | 0.50 | 35.0 | 3.30e-01 | 74.3% | 94.7% |
| 6rtqA00 | 2.40.128.30 | Mainly Beta › Beta Barrel › Lipocalin › Avidin-like | 0.50 | 36.0 | 3.09e-01 | 77.0% | 75.9% |
| 3uc2A00 | 2.60.40.3340 | Mainly Beta › Sandwich › Immunoglobulin-like › Domain of unknown function DUF4426 | 0.50 | 41.0 | 3.52e-01 | 91.9% | 71.8% |
| 2ofqA01 | 2.60.40.2500 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.50 | 40.0 | 3.84e-01 | 91.9% | 97.8% |
ECOD (42)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4556837 | 1.1.8.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain | 0.82 | 71.0 | 7.32e-01 | 94.6% | 98.6% |
| 4204303 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.78 | 57.0 | 5.29e-01 | 79.7% | 62.2% |
| 4184958 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.78 | 56.0 | 5.36e-01 | 79.7% | 65.9% |
| 4128405 | 1.1.7.17 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N | 0.78 | 57.0 | 5.88e-01 | 81.1% | 81.4% |
| 3292420 | 1.1.7.17 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N | 0.77 | 57.0 | 5.30e-01 | 81.1% | 63.3% |
| 3199895 | 1.1.7.17 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N | 0.77 | 57.0 | 5.18e-01 | 81.1% | 60.0% |
| 2814716 | 1.1.7.17 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N | 0.77 | 56.0 | 5.15e-01 | 81.1% | 60.0% |
| 4526316 | 1.1.7.17 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N | 0.77 | 56.0 | 5.16e-01 | 81.1% | 60.0% |
| 4273414 | 1.1.7.17 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N | 0.77 | 56.0 | 5.77e-01 | 81.1% | 81.4% |
| 5075927 | 1.1.8.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain | 0.77 | 66.0 | 6.25e-01 | 94.6% | 100.0% |
| 4087314 | 1.1.7.17 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N | 0.77 | 55.0 | 5.41e-01 | 79.7% | 70.0% |
| 4854958 | 1.1.7.17 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N | 0.76 | 56.0 | 5.08e-01 | 81.1% | 59.4% |
| 3219717 | 1.1.8.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain | 0.76 | 65.0 | 6.14e-01 | 94.6% | 98.9% |
| 4111597 | 1.1.7.17 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N | 0.76 | 55.0 | 5.78e-01 | 79.7% | 86.2% |
| 4163711 | 1.1.7.17 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N | 0.76 | 54.0 | 5.14e-01 | 78.4% | 64.7% |
| 3973553 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.75 | 55.0 | 5.68e-01 | 81.1% | 81.4% |
| 4047241 | 1.1.7.17 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N | 0.75 | 55.0 | 5.06e-01 | 81.1% | 60.0% |
| 4567650 | 1.1.8.5 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › tRNA_Me_trans_C | 0.75 | 65.0 | 5.64e-01 | 97.3% | 79.1% |
| 3504760 | 1.1.8.5 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › tRNA_Me_trans_C | 0.74 | 64.0 | 6.07e-01 | 97.3% | 94.4% |
| 4930314 | 1.1.8.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › GTP_EFTU_D3 | 0.74 | 63.0 | 6.00e-01 | 93.2% | 100.0% |
| 3957622 | 1.1.8.5 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › tRNA_Me_trans_C | 0.73 | 63.0 | 6.12e-01 | 95.9% | 95.2% |
| 3648952 | 1.1.7.21 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RIBIOP_C | 0.71 | 53.0 | 4.66e-01 | 78.4% | 71.4% |
| 3600462 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.70 | 53.0 | 5.24e-01 | 81.1% | 78.8% |
| 3950185 | 1.1.8.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain | 0.70 | 61.0 | 5.73e-01 | 97.3% | 86.7% |
| 3277840 | 1.1.17.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin | 0.70 | 56.0 | 4.09e-01 | 87.8% | 91.2% |
| 5038126 | 1.1.8.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain | 0.70 | 58.0 | 5.82e-01 | 97.3% | 90.7% |
| 3389763 | 1.1.7.45 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › eEFSec_4th | 0.69 | 53.0 | 4.85e-01 | 81.1% | 71.6% |
| 3510937 | 1.1.7.45 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › eEFSec_4th | 0.69 | 53.0 | 4.68e-01 | 81.1% | 74.3% |
| 3596497 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.69 | 51.0 | 4.21e-01 | 79.7% | 64.4% |
| 4580145 | 1.1.8.21 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › Baseplate_J | 0.68 | 58.0 | 5.56e-01 | 95.9% | 96.5% |
| 3947742 | 1.1.8.21 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › Baseplate_J | 0.64 | 53.0 | 5.18e-01 | 95.9% | 97.6% |
| 3972951 | 1.1.7.88 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF25963 | 0.63 | 45.0 | 4.55e-01 | 77.0% | 86.7% |
| 3626400 | 4.1.1.19 ↗ | beta barrels › SH3 › SH3 › SH3 › LSM | 0.60 | 41.0 | 3.45e-01 | 70.3% | 54.6% |
| None | — | 0.60 | 52.0 | 3.40e-01 | 100.0% | 75.6% | |
| 1995 | 12.1.1.0 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain | 0.58 | 43.0 | 4.04e-01 | 79.7% | 92.4% |
| 3262495 | 11.1.1.802 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF8390 | 0.55 | 44.0 | 4.24e-01 | 90.5% | 77.6% |
| 3924183 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.55 | 45.0 | 4.41e-01 | 94.6% | 98.8% |
| 3396354 | 73.1.1.1 ↗ | beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain › FHA | 0.52 | 42.0 | 3.60e-01 | 89.2% | 85.8% |
| 3794026 | 11.1.1.12 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Filamin | 0.51 | 40.0 | 3.92e-01 | 90.5% | 90.6% |
| 2801583 | 9.2.1.1 ↗ | beta barrels › Lipocalins/Streptavidin › Avidin/Streptavidin › Avidin/Streptavidin › Avidin | 0.51 | 36.0 | 3.18e-01 | 77.0% | 74.4% |
| 3264881 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.51 | 46.0 | 3.94e-01 | 100.0% | 72.2% |
| 3284300 | 11.1.1.948 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF31173 | 0.50 | 40.0 | 3.63e-01 | 89.2% | 86.7% |
D3
medium
residues 486-520_808-849_916-960
Domain cluster:
representative
CATH (31)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1cpcB00 | 1.10.490.20 | Mainly Alpha › Orthogonal Bundle › Globin-like › Phycocyanins | 0.83 | 78.0 | 6.85e-01 | 99.2% | 97.7% |
| 1kn1B00 | 1.10.490.20 | Mainly Alpha › Orthogonal Bundle › Globin-like › Phycocyanins | 0.81 | 76.0 | 6.82e-01 | 99.2% | 81.4% |
| 4xxiA00 | 1.10.490.20 | Mainly Alpha › Orthogonal Bundle › Globin-like › Phycocyanins | 0.80 | 74.0 | 6.90e-01 | 99.2% | 81.0% |
| 1b8dA00 | 1.10.490.20 | Mainly Alpha › Orthogonal Bundle › Globin-like › Phycocyanins | 0.80 | 74.0 | 6.63e-01 | 99.2% | 81.7% |
| 4uiqB00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.79 | 74.0 | 6.82e-01 | 100.0% | 89.5% |
| 4f0uA00 | 1.10.490.20 | Mainly Alpha › Orthogonal Bundle › Globin-like › Phycocyanins | 0.79 | 73.0 | 6.60e-01 | 99.2% | 82.5% |
| 1or4B00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.78 | 73.0 | 6.63e-01 | 100.0% | 84.8% |
| 2bnlC00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.74 | 67.0 | 6.53e-01 | 98.4% | 96.3% |
| 3ubcA00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.72 | 66.0 | 6.49e-01 | 100.0% | 98.5% |
| 6wk3A00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.71 | 65.0 | 6.13e-01 | 100.0% | 88.3% |
| 1x9fD00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.69 | 63.0 | 6.01e-01 | 100.0% | 98.6% |
| 4b4yA00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.69 | 62.0 | 5.84e-01 | 100.0% | 97.3% |
| 6o0aA01 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.69 | 62.0 | 5.84e-01 | 100.0% | 88.6% |
| 1gcvB00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.67 | 60.0 | 5.87e-01 | 100.0% | 99.3% |
| 1cqxA01 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.67 | 61.0 | 5.70e-01 | 100.0% | 86.0% |
| 2wy4A00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.67 | 60.0 | 5.80e-01 | 100.0% | 95.7% |
| 1cg5B00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.66 | 59.0 | 5.64e-01 | 100.0% | 95.0% |
| 2k3qA00 | 1.10.274.70 | Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › Spidroin, N-terminal domain | 0.59 | 44.0 | 4.46e-01 | 76.2% | 84.7% |
| 4g12A02 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.58 | 42.0 | 3.92e-01 | 73.8% | 75.2% |
| 4kw3A00 | 3.40.1310.20 | Alpha Beta › 3-Layer(aba) Sandwich › Replication Protein E1; Chain: A, › | 0.56 | 51.0 | 3.94e-01 | 100.0% | 62.0% |
| 1s2xA00 | 1.20.190.30 | Mainly Alpha › Up-down Bundle › Delta-Endotoxin; domain 1 › CAG pathogenicity island protein, CagZ | 0.56 | 40.0 | 3.55e-01 | 74.6% | 77.8% |
| 3f4mA00 | 1.20.1440.160 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Tumor necrosis factor alpha-induced protein 8-like | 0.55 | 43.0 | 3.98e-01 | 100.0% | 64.3% |
| 3f7cA00 | 1.20.1590.10 | Mainly Alpha › Up-down Bundle › YP_001051499.1 fold like › YP_001051499.1 domain like | 0.55 | 37.0 | 3.22e-01 | 100.0% | 42.2% |
| 3vprA02 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.54 | 39.0 | 3.73e-01 | 74.6% | 77.9% |
| 1sj8A02 | 1.20.120.230 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like | 0.51 | 41.0 | 4.17e-01 | 87.7% | 95.1% |
| 4fjvA02 | 1.20.1300.20 | Mainly Alpha › Up-down Bundle › 3 helical TM bundles of succinate and fumarate reductases › Peptidase C65 Otubain, subdomain 2 | 0.51 | 41.0 | 3.93e-01 | 87.7% | 91.0% |
| 1m56C02 | 1.20.120.80 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Cytochrome c oxidase, subunit III, four-helix bundle | 0.51 | 38.0 | 3.24e-01 | 77.0% | 79.6% |
| 4iu9B02 | 1.20.1250.20 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › MFS general substrate transporter like domains | 0.51 | 40.0 | 3.45e-01 | 86.1% | 91.1% |
| 7d5qA01 | 1.20.1250.20 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › MFS general substrate transporter like domains | 0.50 | 39.0 | 3.50e-01 | 84.4% | 96.2% |
| 2rkkA01 | 1.25.40.270 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Vacuolar protein sorting-associated protein vta1 | 0.50 | 39.0 | 3.61e-01 | 82.0% | 90.4% |
| 2gnxA01 | 1.10.3450.30 | Mainly Alpha › Orthogonal Bundle › Hyaluronidase domain-like › | 0.50 | 38.0 | 3.40e-01 | 80.3% | 95.5% |
ECOD (18)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4859243 | 106.1.1.2 ↗ | alpha arrays › Globin-like › Globin-like › Globin-like › Phycobilisome | 0.81 | 75.0 | 6.76e-01 | 99.2% | 80.9% |
| 3027339 | 106.1.1.2 ↗ | alpha arrays › Globin-like › Globin-like › Globin-like › Phycobilisome | 0.80 | 76.0 | 6.85e-01 | 100.0% | 82.3% |
| 3959087 | 106.1.1.0 ↗ | alpha arrays › Globin-like › Globin-like › Globin-like | 0.79 | 73.0 | 6.79e-01 | 100.0% | 91.3% |
| 51266 | 106.1.1.0 ↗ | alpha arrays › Globin-like › Globin-like › Globin-like | 0.78 | 73.0 | 6.56e-01 | 99.2% | 82.5% |
| 3236920 | 106.1.1.8 ↗ | alpha arrays › Globin-like › Globin-like › Globin-like › HisK-N-like | 0.74 | 68.0 | 6.33e-01 | 99.2% | 85.3% |
| 3935393 | 106.1.1.8 ↗ | alpha arrays › Globin-like › Globin-like › Globin-like › HisK-N-like | 0.74 | 67.0 | 6.37e-01 | 99.2% | 91.7% |
| 3914806 | 106.1.1.1 ↗ | alpha arrays › Globin-like › Globin-like › Globin-like › Globin | 0.71 | 65.0 | 5.99e-01 | 100.0% | 92.3% |
| 3181221 | 106.1.1.1 ↗ | alpha arrays › Globin-like › Globin-like › Globin-like › Globin | 0.71 | 64.0 | 5.88e-01 | 100.0% | 82.5% |
| 4196397 | 106.1.1.1 ↗ | alpha arrays › Globin-like › Globin-like › Globin-like › Globin | 0.68 | 62.0 | 5.93e-01 | 100.0% | 97.1% |
| 3955621 | 603.5.1.33 ↗ | alpha bundles › STAT-like › FlgN-like › FlgN-like › SLAC1 | 0.55 | 41.0 | 3.82e-01 | 77.9% | 92.3% |
| 5071165 | 633.23.1.0 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin | 0.53 | 43.0 | 4.09e-01 | 90.2% | 84.7% |
| 3175814 | 174.1.1.33 ↗ | few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Erg28 | 0.53 | 44.0 | 4.24e-01 | 92.6% | 81.8% |
| 3917126 | 174.1.1.33 ↗ | few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Erg28 | 0.51 | 44.0 | 4.13e-01 | 94.3% | 81.3% |
| 3255685 | 5059.1.1.0 ↗ | alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter | 0.51 | 35.0 | 3.49e-01 | 91.0% | 68.0% |
| 3878144 | 601.1.2.2 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › I/LWEQ domain (Pfam 01608) › I_LWEQ | 0.51 | 41.0 | 3.98e-01 | 86.9% | 86.7% |
| 4972007 | 150.1.1.0 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin | 0.51 | 41.0 | 3.98e-01 | 87.7% | 80.0% |
| 3381517 | 6026.1.1.0 ↗ | alpha duplicates or obligate multimers › cwf21 domain › cwf21 domain › cwf21 domain | 0.51 | 37.0 | 3.81e-01 | 96.7% | 79.2% |
| 4999202 | 1076.1.1.1 ↗ | alpha bundles › Intramembrane protease Rce1-related › Intramembrane protease Rce1-related › Intramembrane protease Rce1-related › Rce1-like | 0.50 | 47.0 | 3.61e-01 | 100.0% | 58.4% |
D4
medium
residues 521-616_773-807
Domain cluster:
rep: BML_08182015_1_5m_scaffold_5_prodigal-single.1__X__X__00067__D51-148_323-350
D5
medium
residues 1013-1065