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BML_08042016_6_5m_scaffold_3_prodigal-single.1__X__X__00261
Bact-VirBML_08042016_6_5m_scaffold_3_prodigal-single.1__X__X__00261
Identity
- Kingdom:
- phage
Quality
92.5
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 1-54
Domain cluster:
representative
CATH (7)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 8dy9I01 | 3.10.28.10 | Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases | 0.61 | 45.0 | 3.03e-01 | 88.9% | 20.9% |
| 3pw3D00 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.56 | 45.0 | 2.87e-01 | 100.0% | 69.4% |
| 2zxrA01 | 2.40.50.460 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.55 | 42.0 | 3.23e-01 | 94.4% | 84.2% |
| 4c89C00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.54 | 40.0 | 2.61e-01 | 90.7% | 76.4% |
| 3l60A01 | 3.30.559.10 | Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain | 0.54 | 43.0 | 3.01e-01 | 100.0% | 70.9% |
| 5yl6A01 | 2.60.120.590 | Mainly Beta › Sandwich › Jelly Rolls › Alpha-ketoglutarate-dependent dioxygenase AlkB-like | 0.52 | 40.0 | 3.00e-01 | 96.3% | 98.9% |
| 4l0fA00 | 1.10.630.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 | 0.52 | 35.0 | 2.12e-01 | 70.4% | 69.1% |
ECOD (5)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3608945 | 323.1.1.3 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding | 0.57 | 47.0 | 3.44e-01 | 100.0% | 54.4% |
| 3441755 | 304.9.1.1 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 | 0.56 | 39.0 | 2.84e-01 | 75.9% | 27.2% |
| 3803751 | 219.1.1.1 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 | 0.54 | 43.0 | 3.05e-01 | 98.1% | 54.0% |
| 3306790 | 149.1.1.1 ↗ | alpha arrays › Cytochrome P450 › Cytochrome P450 › Cytochrome P450 › p450 | 0.53 | 37.0 | 2.41e-01 | 75.9% | 17.3% |
| 2088823 | 270.1.1.0 ↗ | beta barrels › FMT C-terminal domain-like › FMT C-terminal domain-related › FMT C-terminal domain-related | 0.52 | 36.0 | 3.57e-01 | 72.2% | 80.4% |
D2
high
residues 67-183
Domain cluster:
representative
CATH (13)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1cunA01 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.64 | 40.0 | 4.25e-01 | 77.8% | 70.6% |
| 2y39A00 | 1.20.120.1490 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.64 | 42.0 | 4.38e-01 | 82.9% | 70.9% |
| 4iloA00 | 1.10.287.1490 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.62 | 40.0 | 3.18e-01 | 70.9% | 32.6% |
| 1sumB01 | 1.20.58.220 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 | 0.60 | 37.0 | 3.86e-01 | 82.9% | 66.4% |
| 3vkgA02 | 1.20.140.100 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Dynein motor heavy chain, linker domain, N-terminal subdomain | 0.58 | 41.0 | 3.78e-01 | 81.2% | 57.1% |
| 1wdzA00 | 1.20.1270.60 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain | 0.57 | 46.0 | 3.65e-01 | 84.6% | 76.6% |
| 2p5tA00 | 1.10.8.130 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.56 | 38.0 | 4.23e-01 | 82.9% | 87.0% |
| 2pmsC00 | 6.10.140.920 | Special › Helix non-globular › Helix Hairpins › | 0.55 | 44.0 | 4.57e-01 | 97.4% | 89.9% |
| 6iknD01 | 1.20.1270.60 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain | 0.55 | 44.0 | 3.37e-01 | 85.5% | 73.4% |
| 2qe7G01 | 1.10.287.80 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ATP synthase, gamma subunit, helix hairpin domain | 0.54 | 35.0 | 3.84e-01 | 70.9% | 78.4% |
| 3qo8A01 | 1.10.287.40 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain | 0.54 | 40.0 | 4.26e-01 | 78.6% | 94.3% |
| 3lvyE01 | 1.20.1290.10 | Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like | 0.53 | 28.0 | 2.55e-01 | 74.4% | 35.2% |
| 3i9wA00 | 1.20.58.920 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.50 | 46.0 | 3.49e-01 | 100.0% | 81.9% |
ECOD (28)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3577476 | 109.4.1.514 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Vps54 | 0.64 | 47.0 | 4.16e-01 | 76.1% | 61.2% |
| 2543302 | 5054.1.1.58 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › YVC1_C | 0.63 | 45.0 | 3.91e-01 | 99.1% | 49.1% |
| 3849951 | 5054.1.1.2 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans | 0.61 | 48.0 | 3.59e-01 | 99.1% | 32.1% |
| 3714806 | 4121.1.1.1 ↗ | a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like › CorA | 0.61 | 45.0 | 3.35e-01 | 78.6% | 31.8% |
| 3601815 | 4121.1.1.0 ↗ | a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like | 0.61 | 45.0 | 3.57e-01 | 81.2% | 38.5% |
| 5024245 | 3291.1.1.0 ↗ | alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related | 0.59 | 41.0 | 4.28e-01 | 70.9% | 79.1% |
| 5042955 | 2004.1.1.87 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N | 0.59 | 40.0 | 2.55e-01 | 72.6% | 13.8% |
| 3282593 | 4121.1.1.1 ↗ | a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like › CorA | 0.58 | 44.0 | 3.49e-01 | 82.1% | 39.2% |
| 3237916 | 174.1.1.0 ↗ | few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain | 0.58 | 45.0 | 3.92e-01 | 82.9% | 88.3% |
| 3275930 | 4177.1.1.5 ↗ | alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › Vps5 | 0.57 | 44.0 | 3.40e-01 | 80.3% | 75.2% |
| 3186154 | 622.1.1.7 ↗ | alpha bundles › YvfG-like › HSC20 (HSCB), C-terminal oligomerisation domain › HSC20 (HSCB), C-terminal oligomerisation domain › DUF7607 | 0.57 | 35.0 | 3.68e-01 | 88.0% | 65.5% |
| 4016292 | 192.2.1.18 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › ING | 0.57 | 39.0 | 3.78e-01 | 71.8% | 63.0% |
| 3961148 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.56 | 40.0 | 3.99e-01 | 72.6% | 87.5% |
| 3733140 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.56 | 39.0 | 3.53e-01 | 73.5% | 53.5% |
| 3682372 | 109.4.1.1361 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_CAND1 | 0.56 | 35.0 | 3.06e-01 | 82.9% | 41.7% |
| 5065286 | 129.1.1.0 ↗ | alpha arrays › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like | 0.55 | 38.0 | 3.94e-01 | 75.2% | 72.8% |
| 4018370 | 5086.1.1.0 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins | 0.55 | 42.0 | 4.10e-01 | 81.2% | 73.8% |
| 4663621 | 603.2.1.0 ↗ | alpha bundles › STAT-like › STAT › STAT | 0.54 | 40.0 | 3.85e-01 | 77.8% | 68.5% |
| 4992004 | 192.7.1.0 ↗ | alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm | 0.54 | 41.0 | 4.51e-01 | 92.3% | 97.9% |
| 3823125 | 633.4.1.1 ↗ | alpha bundles › Bromodomain-like › Plant invertase/pectin methylesterase inhibitor › Plant invertase/pectin methylesterase inhibitor › PMEI | 0.54 | 41.0 | 3.74e-01 | 79.5% | 74.7% |
| 3449084 | 622.4.1.0 ↗ | alpha bundles › YvfG-like › Mite allergen Der p 5-related › Mite allergen Der p 5-related | 0.53 | 43.0 | 4.49e-01 | 88.0% | 94.3% |
| 5051294 | 601.41.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › C-terminal domain in uncharacterized DUF3829-like protein › C-terminal domain in uncharacterized DUF3829-like protein | 0.53 | 38.0 | 3.76e-01 | 98.3% | 68.8% |
| 4238120 | 195.1.1.1 ↗ | alpha complex topology › NusB-like › NusB-like › NusB-like › NusB | 0.52 | 46.0 | 3.80e-01 | 94.9% | 85.6% |
| 3692017 | 192.29.1.0 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) | 0.52 | 48.0 | 4.48e-01 | 98.3% | 86.4% |
| 5072326 | 310.2.1.0 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF | 0.52 | 43.0 | 4.22e-01 | 88.0% | 95.2% |
| 3815161 | 633.4.1.1 ↗ | alpha bundles › Bromodomain-like › Plant invertase/pectin methylesterase inhibitor › Plant invertase/pectin methylesterase inhibitor › PMEI | 0.51 | 37.0 | 3.42e-01 | 75.2% | 71.0% |
| 4077080 | 5045.1.1.1 ↗ | alpha bundles › F1F0 ATP synthase subunit A › F1F0 ATP synthase subunit A › F1F0 ATP synthase subunit A › ATP-synt_A | 0.51 | 44.0 | 3.42e-01 | 93.2% | 65.1% |
| 4973816 | 4323.1.1.0 ↗ | alpha bundles › helical bundle domain in vacuolar ATP synthase subunit C › helical bundle domain in vacuolar ATP synthase subunit C › helical bundle domain in vacuolar ATP synthase subunit C | 0.51 | 40.0 | 3.74e-01 | 85.5% | 68.3% |