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BML_08042016_6_5m_scaffold_3_prodigal-single.1__X__X__00263
Bact-VirBML_08042016_6_5m_scaffold_3_prodigal-single.1__X__X__00263
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 11-93
Domain cluster:
representative
CATH (14)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3qwuA01 | 3.10.450.740 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.61 | 35.0 | 4.23e-01 | 77.1% | 97.9% |
| 8cdaB02 | 2.40.110.10 | Mainly Beta › Beta Barrel › Butyryl-CoA Dehydrogenase, subunit A; domain 2 › Butyryl-CoA Dehydrogenase, subunit A, domain 2 | 0.57 | 39.0 | 3.83e-01 | 71.1% | 100.0% |
| 3fewX02 | 3.30.1310.40 | Alpha Beta › 2-Layer Sandwich › Ybab; Chain: A; › | 0.56 | 32.0 | 3.14e-01 | 79.5% | 48.4% |
| 2jllA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.54 | 38.0 | 3.71e-01 | 88.0% | 65.3% |
| 2bouA02 | 2.10.25.10 | Mainly Beta › Ribbon › Laminin › Laminin | 0.53 | 27.0 | 3.44e-01 | 78.3% | 86.7% |
| 4zgfA00 | 2.40.128.270 | Mainly Beta › Beta Barrel › Lipocalin › | 0.53 | 39.0 | 3.39e-01 | 80.7% | 87.2% |
| 4p78A00 | 3.30.160.250 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.53 | 34.0 | 3.41e-01 | 86.7% | 64.0% |
| 2v1nA01 | 1.10.10.2030 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › DNA/RNA-binding protein Kin17, conserved domain | 0.52 | 30.0 | 2.87e-01 | 100.0% | 45.5% |
| 5dx9A01 | 3.30.70.1020 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Trehalose-6-phosphate phosphatase related protein; domain 2 | 0.52 | 36.0 | 3.85e-01 | 83.1% | 86.1% |
| 2ehbD00 | 3.30.310.80 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Kinase associated domain 1, KA1 | 0.52 | 36.0 | 3.19e-01 | 86.7% | 48.4% |
| 3jcmH04 | 3.30.70.870 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Elongation Factor G (Translational Gtpase), domain 3 | 0.51 | 33.0 | 3.42e-01 | 80.7% | 68.8% |
| 1u02A02 | 3.30.70.1020 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Trehalose-6-phosphate phosphatase related protein; domain 2 | 0.51 | 35.0 | 3.67e-01 | 83.1% | 77.6% |
| 6ewnA00 | 2.60.40.790 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.51 | 35.0 | 3.32e-01 | 71.1% | 70.7% |
| 6aeoB01 | 3.30.1330.60 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › OmpA-like domain | 0.50 | 38.0 | 3.30e-01 | 83.1% | 65.9% |
ECOD (22)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3271939 | 206.1.3.24 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › RNA_lig_T4_1 | 0.92 | 87.0 | 5.73e-01 | 100.0% | 30.7% |
| 3597997 | 63.1.1.0 ↗ | beta barrels › Mannose 6-phosphate receptor domain › Mannose 6-phosphate receptor domain › Mannose 6-phosphate receptor domain | 0.64 | 37.0 | 3.16e-01 | 81.9% | 34.8% |
| 4992329 | 205.1.1.16 ↗ | a+b two layers › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › Fer4_7 | 0.55 | 36.0 | 3.66e-01 | 88.0% | 65.9% |
| 3291325 | 317.1.1.6 ↗ | a+b two layers › Translation initiation factor eIF4e and phosphothreonine lyase › Translation initiation factor eIF4e and phosphothreonine lyase › Translation initiation factor eIF4e and phosphothreonine lyase › RamC_N | 0.55 | 42.0 | 3.30e-01 | 84.3% | 53.7% |
| 3902667 | 12.5.1.2 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related › GPS | 0.54 | 32.0 | 2.65e-01 | 74.7% | 31.0% |
| 5025264 | 319.1.1.1 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 | 0.54 | 37.0 | 3.51e-01 | 71.1% | 65.7% |
| 2122949 | 2006.1.1.3 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Trehalose_PPase | 0.54 | 37.0 | 2.69e-01 | 83.1% | 24.2% |
| 4948745 | 2006.1.1.3 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Trehalose_PPase | 0.53 | 38.0 | 2.72e-01 | 83.1% | 23.8% |
| 3460668 | 3012.1.1.1 ↗ | a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain › Trehalose_PPase | 0.52 | 38.0 | 3.94e-01 | 83.1% | 84.0% |
| 4011314 | 3012.1.1.0 ↗ | a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain | 0.52 | 37.0 | 3.80e-01 | 83.1% | 78.8% |
| 4959715 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.52 | 45.0 | 2.90e-01 | 96.4% | 24.2% |
| 4327478 | 304.162.1.0 ↗ | a+b two layers › Alpha-beta plaits › Competence or damage-inducible protein CinA middle domain › Competence or damage-inducible protein CinA middle domain | 0.52 | 33.0 | 3.65e-01 | 79.5% | 84.6% |
| 4928574 | 241.11.1.0 ↗ | a+b two layers › Type III secretory system chaperone-like › YjbR-like › YjbR-like | 0.52 | 41.0 | 4.10e-01 | 86.7% | 95.5% |
| 5012458 | 206.1.3.23 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › RNA_ligase | 0.51 | 42.0 | 3.08e-01 | 100.0% | 31.7% |
| 4182188 | 301.3.1.1 ↗ | a+b three layers › Bacillus chorismate mutase-like › OmpA-like › OmpA-like › OmpA | 0.51 | 39.0 | 3.24e-01 | 84.3% | 66.3% |
| 3618540 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.51 | 34.0 | 3.57e-01 | 81.9% | 74.7% |
| 3399741 | 5.1.4.377 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_WDR35_TULP_N | 0.51 | 41.0 | 2.70e-01 | 85.5% | 21.2% |
| 3920581 | 109.4.1.1366 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › DOCK_C-D_N, PF28208 | 0.50 | 41.0 | 2.44e-01 | 95.2% | 27.5% |
| 4977229 | 304.131.1.0 ↗ | a+b two layers › Alpha-beta plaits › Phosphonoacetate hydrolase insertion domain › Phosphonoacetate hydrolase insertion domain | 0.50 | 35.0 | 3.67e-01 | 81.9% | 80.0% |
| 3168829 | 5.1.5.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed | 0.50 | 42.0 | 2.78e-01 | 92.8% | 21.7% |
| 2881796 | 5100.1.1.0 ↗ | extended segments › iron-sulfur center-binding helical hairpin › iron-sulfur center-binding helical hairpin › iron-sulfur center-binding helical hairpin | 0.50 | 34.0 | 3.07e-01 | 84.3% | 48.0% |
| 3424143 | 109.4.1.2687 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF28645 | 0.50 | 41.0 | 2.66e-01 | 95.2% | 25.1% |
D2
high
residues 109-186
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF09511.16 best | RNA_lig_T4_1 | 30.8 | 3.70e-07 | 100.0% | 40.1% |
CATH (19)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1s68A02 | 3.30.470.30 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › DNA ligase/mRNA capping enzyme | 0.72 | 64.0 | 5.71e-01 | 100.0% | 82.3% |
| 3qwuA02 | 3.30.470.30 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › DNA ligase/mRNA capping enzyme | 0.71 | 63.0 | 4.84e-01 | 100.0% | 43.3% |
| 2vugA03 | 3.30.470.30 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › DNA ligase/mRNA capping enzyme | 0.69 | 62.0 | 5.68e-01 | 100.0% | 76.5% |
| 3l2pA03 | 3.30.470.30 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › DNA ligase/mRNA capping enzyme | 0.61 | 54.0 | 4.70e-01 | 100.0% | 79.2% |
| 2olsA02 | 3.30.470.20 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain | 0.60 | 52.0 | 4.34e-01 | 100.0% | 95.1% |
| 1z2nX02 | 3.30.470.20 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain | 0.60 | 50.0 | 4.51e-01 | 100.0% | 67.0% |
| 2cfmA02 | 3.30.470.30 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › DNA ligase/mRNA capping enzyme | 0.59 | 52.0 | 3.87e-01 | 100.0% | 48.8% |
| 2lxxA00 | 3.40.20.10 | Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin | 0.57 | 35.0 | 2.89e-01 | 73.1% | 31.6% |
| 3k5iA03 | 3.30.470.20 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain | 0.57 | 50.0 | 3.81e-01 | 100.0% | 42.4% |
| 1vs0A02 | 3.30.470.30 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › DNA ligase/mRNA capping enzyme | 0.57 | 51.0 | 4.56e-01 | 100.0% | 77.3% |
| 1kblA06 | 3.30.470.20 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain | 0.56 | 47.0 | 4.49e-01 | 100.0% | 88.8% |
| 3vnnA00 | 3.30.470.30 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › DNA ligase/mRNA capping enzyme | 0.55 | 48.0 | 4.20e-01 | 100.0% | 68.5% |
| 6a97C01 | 3.30.500.10 | Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like | 0.55 | 48.0 | 4.06e-01 | 98.7% | 65.6% |
| 3cjeA00 | 3.30.300.20 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain | 0.53 | 45.0 | 3.76e-01 | 100.0% | 67.3% |
| 2ihmB03 | 3.30.460.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 | 0.52 | 33.0 | 2.95e-01 | 71.8% | 42.1% |
| 4n6mB00 | 3.10.450.10 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.52 | 39.0 | 3.47e-01 | 80.8% | 94.8% |
| 4tz7A02 | 3.30.810.10 | Alpha Beta › 2-Layer Sandwich › Phosphatidylinositol Phosphate Kinase Iibeta; Chain: A, domain 2 › 2-Layer Sandwich | 0.52 | 44.0 | 3.76e-01 | 100.0% | 71.9% |
| 2fiaB00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.51 | 35.0 | 2.92e-01 | 73.1% | 89.9% |
| 4z9cB00 | 2.40.50.110 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.51 | 44.0 | 3.93e-01 | 100.0% | 88.7% |
ECOD (10)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3271939 | 206.1.3.24 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › RNA_lig_T4_1 | 0.93 | 89.0 | 5.75e-01 | 100.0% | 28.6% |
| 4881570 | 206.1.3.24 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › RNA_lig_T4_1 | 0.93 | 87.0 | 5.86e-01 | 100.0% | 32.0% |
| 1698226 | 206.1.3.23 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › RNA_ligase | 0.72 | 64.0 | 4.74e-01 | 100.0% | 38.7% |
| 3265360 | 267.1.1.0 ↗ | a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain | 0.63 | 46.0 | 3.60e-01 | 97.4% | 37.5% |
| 3187239 | 206.1.3.12 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › TTL | 0.59 | 52.0 | 3.35e-01 | 100.0% | 39.7% |
| 3487043 | 206.1.3.0 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp | 0.56 | 49.0 | 3.52e-01 | 100.0% | 46.1% |
| 3494106 | 206.1.3.16 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › Ins134_P3_kin | 0.56 | 49.0 | 3.66e-01 | 100.0% | 55.1% |
| 3256971 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.55 | 46.0 | 2.96e-01 | 92.3% | 31.5% |
| 3669903 | 5.1.4.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 | 0.53 | 43.0 | 2.75e-01 | 91.0% | 39.8% |
| 221400 | 2.1.1.99 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Cdc13_OB2 | 0.51 | 42.0 | 3.67e-01 | 96.2% | 87.7% |