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BML_08042016_6_5m_scaffold_3_prodigal-single.1__X__X__00301
Bact-VirBML_08042016_6_5m_scaffold_3_prodigal-single.1__X__X__00301
Identity
- Kingdom:
- phage
Quality
89.6
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 66-99
Domain cluster:
representative
CATH (10)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1rvjH02 | 3.90.50.10 | Alpha Beta › Alpha-Beta Complex › Photosynthetic Reaction Center; Chain H, domain 2 › Photosynthetic Reaction Center, subunit H, domain 2 | 0.69 | 54.0 | 3.65e-01 | 100.0% | 23.5% |
| 3f6gA02 | 3.30.160.340 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.64 | 54.0 | 4.50e-01 | 100.0% | 61.9% |
| 2r76A00 | 3.30.160.150 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Lipoprotein like domain | 0.62 | 51.0 | 3.48e-01 | 100.0% | 34.8% |
| 2jxpA01 | 3.30.160.150 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Lipoprotein like domain | 0.61 | 49.0 | 3.38e-01 | 100.0% | 34.0% |
| 3bt3A01 | 3.30.1900.10 | Alpha Beta › 2-Layer Sandwich › glyoxalase-related enzyme like fold › glyoxalase-related enzyme like domain | 0.60 | 44.0 | 3.83e-01 | 100.0% | 52.8% |
| 2wweA01 | 3.30.1520.10 | Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain | 0.58 | 44.0 | 3.28e-01 | 100.0% | 30.8% |
| 4qunA00 | 3.90.190.10 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily | 0.56 | 44.0 | 2.68e-01 | 100.0% | 12.0% |
| 2y69F00 | 2.60.11.10 | Mainly Beta › Sandwich › Cytochrome C Oxidase; Chain F › Cytochrome c oxidase, subunit Vb | 0.55 | 46.0 | 3.40e-01 | 97.1% | 38.7% |
| 2au3A02 | 3.90.980.10 | Alpha Beta › Alpha-Beta Complex › DNA primase DNAg catalytic core, N-terminal domain › DNA primase, catalytic core, N-terminal domain | 0.53 | 40.0 | 2.91e-01 | 100.0% | 30.7% |
| 1aorA02 | 1.10.569.10 | Mainly Alpha › Orthogonal Bundle › Aldehyde Ferredoxin Oxidoreductase Protein, subunit A; domain 2 › Aldehyde Ferredoxin Oxidoreductase Protein, subunit A, domain 2 | 0.51 | 39.0 | 2.61e-01 | 100.0% | 17.2% |
ECOD (8)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3694746 | 2003.1.2.18 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain | 0.70 | 58.0 | 3.20e-01 | 100.0% | 7.4% |
| 3319421 | 4.8.1.0 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like | 0.70 | 52.0 | 4.69e-01 | 100.0% | 58.0% |
| 3349603 | 708.1.1.0 ↗ | beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain | 0.65 | 48.0 | 3.96e-01 | 100.0% | 41.0% |
| 3470912 | 220.1.1.1 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH | 0.64 | 54.0 | 3.74e-01 | 100.0% | 33.3% |
| 3974211 | 211.1.1.0 ↗ | a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase | 0.59 | 48.0 | 3.33e-01 | 100.0% | 24.3% |
| 4219320 | 3702.1.1.0 ↗ | beta complex topology › Penicillin binding protein dimerisation domain › Penicillin binding protein dimerisation domain › Penicillin binding protein dimerisation domain | 0.56 | 40.0 | 2.98e-01 | 91.2% | 26.1% |
| 3921128 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.53 | 40.0 | 2.61e-01 | 100.0% | 16.6% |
| 3284081 | 2003.1.2.24 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 | 0.51 | 38.0 | 2.56e-01 | 100.0% | 17.4% |