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BML_08042016_6_5m_scaffold_3_prodigal-single.1__X__X__00307

Bact-Vir

BML_08042016_6_5m_scaffold_3_prodigal-single.1__X__X__00307

Identity

Kingdom:
phage

Quality

78.5 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 9-97
PDB
Domain cluster: rep: NC_031927.1__YP_009323018.1__BOW86_gp085__00085__D3-79
D2 high residues 264-325
PDB
Domain cluster: representative
CATH (4)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4hr1A00 1.20.1270.410 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.82 68.0 5.36e-01 88.7% 85.6%
3pe0A02 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.79 72.0 5.87e-01 96.8% 97.2%
3hr0B01 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.75 53.0 4.81e-01 72.6% 81.0%
4ijjB00 1.20.120.910 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › DksA, coiled-coil domain 0.58 52.0 3.96e-01 95.2% 46.2%
ECOD (3)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3736924 632.8.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › alpha-2-Macroglobulin receptor associated protein (RAP) domain 1 › alpha-2-Macroglobulin receptor associated protein (RAP) domain 1 0.71 54.0 4.00e-01 79.0% 46.4%
3615526 150.5.1.0 ↗ alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like 0.69 53.0 4.81e-01 80.6% 72.5%
3564496 604.1.1.0 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.64 56.0 4.19e-01 98.4% 97.3%
D3 medium residues 184-241
PDB
Domain cluster: representative
CATH (10)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4gr5C01 3.90.820.10 Alpha Beta › Alpha-Beta Complex › Rubredoxin-like › Structural Genomics, Unknown Function 30-nov-00 1gh9 Mol_id 0.66 45.0 4.38e-01 70.7% 78.1%
5ja1B00 3.90.820.10 Alpha Beta › Alpha-Beta Complex › Rubredoxin-like › Structural Genomics, Unknown Function 30-nov-00 1gh9 Mol_id 0.63 45.0 4.36e-01 75.9% 77.3%
3cobC00 3.40.850.10 Alpha Beta › 3-Layer(aba) Sandwich › Kinesin › Kinesin motor domain 0.56 48.0 2.97e-01 96.6% 34.1%
3t7zA00 3.30.420.220 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › 0.54 47.0 3.75e-01 98.3% 98.3%
4g7nA01 3.30.1120.120 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.52 39.0 3.09e-01 81.0% 47.1%
3t0qA00 3.40.850.10 Alpha Beta › 3-Layer(aba) Sandwich › Kinesin › Kinesin motor domain 0.52 46.0 2.93e-01 100.0% 29.6%
1qhdA02 1.10.1350.10 Mainly Alpha › Orthogonal Bundle › Viral capsid alpha domain › Viral capsid alpha domain 0.52 45.0 2.97e-01 94.8% 31.3%
4pn0C00 3.20.100.10 Alpha Beta › Alpha-Beta Barrel › mRNA Triphosphatase Cet1; Chain A › mRNA triphosphatase Cet1-like 0.51 45.0 2.94e-01 98.3% 34.0%
2apoB00 2.20.28.40 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › H/ACA ribonucleoprotein complex, subunit Nop10 0.50 39.0 4.00e-01 87.9% 92.7%
2x1cB01 3.60.60.10 Alpha Beta › 4-Layer Sandwich › Penicillin V Acylase; Chain A › Penicillin V Acylase; Chain A 0.50 39.0 2.55e-01 86.2% 40.8%
ECOD (17)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
1833313 4076.2.1.1 ↗ a+b two layers › L9 N-domain-like › MbtH-like › MbtH-like › MbtH 0.66 45.0 4.38e-01 70.7% 78.1%
3289318 6019.1.1.0 ↗ a+b two layers › C-terminal domain of bypass of forespore C, BofC › C-terminal domain of bypass of forespore C, BofC › C-terminal domain of bypass of forespore C, BofC 0.64 43.0 3.62e-01 70.7% 65.3%
1886098 4076.2.1.1 ↗ a+b two layers › L9 N-domain-like › MbtH-like › MbtH-like › MbtH 0.63 45.0 4.36e-01 75.9% 77.3%
3995853 5001.1.1.1 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.60 52.0 3.29e-01 100.0% 87.6%
3230572 4177.2.1.0 ↗ alpha duplicates or obligate multimers › BAR/IMD domain-like › Inhibitor of kappaB kinase beta dimerization domain › Inhibitor of kappaB kinase beta dimerization domain 0.60 50.0 3.25e-01 100.0% 89.2%
3390813 219.1.1.80 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › DUF4796_C 0.60 46.0 3.43e-01 84.5% 91.0%
1886885 206.1.3.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp 0.60 41.0 2.86e-01 72.4% 62.8%
4285362 4076.2.1.0 ↗ a+b two layers › L9 N-domain-like › MbtH-like › MbtH-like 0.58 52.0 3.81e-01 98.3% 93.3%
3700859 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.57 42.0 2.56e-01 81.0% 93.5%
1518911 4076.2.1.1 ↗ a+b two layers › L9 N-domain-like › MbtH-like › MbtH-like › MbtH 0.57 44.0 3.96e-01 84.5% 73.8%
3175332 1207.1.1.1 ↗ a+b two layers › MTHFR SAM-binding regulatory domain › MTHFR SAM-binding regulatory domain › MTHFR SAM-binding regulatory domain › MTHFR_C 0.52 44.0 2.81e-01 94.8% 70.5%
4176741 4076.2.1.2 ↗ a+b two layers › L9 N-domain-like › MbtH-like › MbtH-like › PF27096 0.51 36.0 2.96e-01 91.4% 41.0%
4044667 4076.2.1.2 ↗ a+b two layers › L9 N-domain-like › MbtH-like › MbtH-like › PF27096 0.51 34.0 3.19e-01 70.7% 69.3%
3512949 2004.1.1.250 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinesin,Microtub_bd 0.51 42.0 2.66e-01 91.4% 50.6%
3951302 4076.2.1.0 ↗ a+b two layers › L9 N-domain-like › MbtH-like › MbtH-like 0.51 41.0 3.13e-01 91.4% 75.3%
4058674 4076.2.1.2 ↗ a+b two layers › L9 N-domain-like › MbtH-like › MbtH-like › PF27096 0.51 37.0 2.98e-01 91.4% 41.9%
3511899 3407.1.1.0 ↗ mixed a+b and a/b › Nop N-terminal domain › Nop N-terminal domain › Nop N-terminal domain 0.50 44.0 3.51e-01 100.0% 100.0%