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BML_08042016_6_5m_scaffold_3_prodigal-single.1__X__X__00344

Bact-Vir

BML_08042016_6_5m_scaffold_3_prodigal-single.1__X__X__00344

Identity

Kingdom:
phage

Quality

84.3 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 10-95
PDB
Domain cluster: representative
CATH (14)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2nmlA00 3.30.2260.10 Alpha Beta › 2-Layer Sandwich › ERH-like fold › Enhancer of rudimentary 0.79 38.0 3.65e-01 87.2% 41.0%
2dtcA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.74 46.0 4.12e-01 100.0% 45.7%
2k49A00 2.30.29.80 Mainly Beta › Roll › PH-domain like › 0.66 46.0 4.15e-01 100.0% 52.5%
4qxaB00 2.30.29.230 Mainly Beta › Roll › PH-domain like › 0.65 41.0 3.43e-01 100.0% 36.7%
3dsmA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.64 42.0 2.84e-01 100.0% 17.7%
2d9vA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.61 43.0 3.94e-01 97.7% 57.4%
4dm5A00 3.30.1450.10 Alpha Beta › 2-Layer Sandwich › Beta-lactamase Inhibitory Protein; Chain:B, domain 1 › 0.60 35.0 3.52e-01 100.0% 55.2%
2yf0A01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.60 35.0 3.58e-01 100.0% 56.3%
5wb2B00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.58 33.0 3.60e-01 98.8% 65.8%
3psfA04 3.30.420.140 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › YqgF/RNase H-like domain 0.53 36.0 2.95e-01 94.2% 36.6%
2b5xA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.51 43.0 3.62e-01 94.2% 81.8%
2b7jB01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.51 42.0 3.46e-01 94.2% 85.6%
2dyuA01 3.60.110.10 Alpha Beta › 4-Layer Sandwich › Nitrilase/N-carbamoyl-D-aminoacid amidohydrolase › Carbon-nitrogen hydrolase 0.50 36.0 2.57e-01 96.5% 22.4%
5epfA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.50 43.0 3.60e-01 96.5% 83.1%
ECOD (21)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4023242 220.1.1.187 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › VPS13_C 0.85 49.0 4.23e-01 100.0% 39.2%
3516087 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.75 46.0 4.89e-01 100.0% 70.7%
3992334 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.66 41.0 2.76e-01 100.0% 17.4%
3753697 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.65 42.0 4.84e-01 100.0% 93.3%
3585813 220.1.1.50 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_17 0.64 41.0 4.64e-01 100.0% 86.2%
3219161 220.1.1.50 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_17 0.64 41.0 3.76e-01 100.0% 50.9%
3399725 220.1.1.50 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_17 0.62 40.0 3.60e-01 100.0% 48.7%
4953417 7089.1.1.0 ↗ a+b two layers › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD 0.61 44.0 4.81e-01 100.0% 92.9%
3286423 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.61 47.0 3.02e-01 100.0% 18.9%
3602236 284.1.3.3 ↗ a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain › DUF4346 0.59 36.0 3.51e-01 94.2% 53.7%
3965976 809.1.1.1 ↗ a+b two layers › BLIP-like › beta-lactamase-inhibitor protein, BLIP › beta-lactamase-inhibitor protein, BLIP › SmpA_OmlA 0.56 33.0 3.25e-01 96.5% 52.1%
5068892 2485.1.1.4 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › AhpC-TSA 0.55 46.0 3.92e-01 96.5% 76.7%
4436313 295.1.1.0 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.54 38.0 3.83e-01 90.7% 71.1%
3189844 2485.1.1.12 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › SCO1-SenC 0.53 44.0 3.40e-01 93.0% 69.3%
3426690 5.1.4.179 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_Vps41 0.53 41.0 2.74e-01 100.0% 19.5%
3180565 2485.1.1.4 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › AhpC-TSA 0.53 42.0 3.24e-01 88.4% 71.2%
3725605 2485.1.1.4 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › AhpC-TSA 0.53 47.0 3.74e-01 96.5% 74.5%
4018751 2485.1.1.72 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › AhpC-TSA_2 0.53 43.0 3.42e-01 89.5% 88.6%
4111791 325.1.7.0 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.51 36.0 3.72e-01 100.0% 77.5%
3520015 2485.1.1.72 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › AhpC-TSA_2 0.50 40.0 3.13e-01 87.2% 78.9%
5783 245.1.1.1 ↗ a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 › RNase_PH_C 0.50 31.0 3.06e-01 79.1% 58.4%