←Back to structures
BML_08042016_6_5m_scaffold_3_prodigal-single.1__X__X__00354
Bact-VirBML_08042016_6_5m_scaffold_3_prodigal-single.1__X__X__00354
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-86
Domain cluster:
rep: OP009281.1__UUV44467.1__RCMENCHIE_98__00098__D3-75
CATH (14)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2rckA01 | 3.15.10.30 | Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › TULIP domain | 0.63 | 54.0 | 4.15e-01 | 100.0% | 74.3% |
| 3zpmA00 | 3.15.10.10 | Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › Bactericidal permeability-increasing protein; domain 1 | 0.62 | 53.0 | 4.08e-01 | 100.0% | 73.9% |
| 3ci0I00 | 3.30.1300.30 | Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › GSPII I/J protein-like | 0.61 | 34.0 | 3.49e-01 | 83.5% | 56.6% |
| 4kghA00 | 3.15.10.10 | Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › Bactericidal permeability-increasing protein; domain 1 | 0.61 | 52.0 | 4.11e-01 | 100.0% | 74.1% |
| 2zutA04 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.60 | 27.0 | 3.13e-01 | 76.5% | 54.2% |
| 2retA00 | 3.30.1300.30 | Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › GSPII I/J protein-like | 0.59 | 33.0 | 3.39e-01 | 83.5% | 56.0% |
| 3pesA00 | 3.30.300.260 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › | 0.59 | 49.0 | 4.94e-01 | 98.8% | 97.6% |
| 3e8tA00 | 3.15.10.30 | Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › TULIP domain | 0.57 | 49.0 | 3.77e-01 | 100.0% | 85.6% |
| 4akrA02 | 3.90.1150.210 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › F-actin capping protein, beta subunit | 0.55 | 37.0 | 3.12e-01 | 80.0% | 40.1% |
| 1vi7A01 | 3.30.230.30 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › Impact, N-terminal domain | 0.52 | 46.0 | 3.97e-01 | 100.0% | 91.1% |
| 3ejvA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.51 | 37.0 | 3.08e-01 | 77.6% | 95.0% |
| 3aa0B02 | 3.90.1150.210 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › F-actin capping protein, beta subunit | 0.51 | 37.0 | 3.07e-01 | 82.4% | 42.6% |
| 5frdA00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.50 | 43.0 | 3.06e-01 | 94.1% | 31.2% |
| 1s68A02 | 3.30.470.30 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › DNA ligase/mRNA capping enzyme | 0.50 | 42.0 | 3.85e-01 | 92.9% | 94.7% |
ECOD (39)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3615383 | 883.1.1.0 ↗ | a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like | 0.70 | 62.0 | 4.93e-01 | 98.8% | 92.6% |
| 3290198 | 883.1.1.0 ↗ | a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like | 0.67 | 60.0 | 4.84e-01 | 100.0% | 76.4% |
| 3601428 | 883.1.1.0 ↗ | a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like | 0.66 | 58.0 | 3.75e-01 | 100.0% | 38.6% |
| 3545708 | 883.1.1.1 ↗ | a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › LBP_BPI_CETP | 0.66 | 58.0 | 4.40e-01 | 100.0% | 76.7% |
| 3511681 | 883.1.1.27 ↗ | a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › DUF7061 | 0.66 | 58.0 | 4.28e-01 | 100.0% | 69.1% |
| 3217527 | 883.1.1.1 ↗ | a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › LBP_BPI_CETP | 0.65 | 57.0 | 4.51e-01 | 100.0% | 77.3% |
| 3854441 | 883.1.1.1 ↗ | a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › LBP_BPI_CETP | 0.65 | 57.0 | 4.30e-01 | 100.0% | 74.0% |
| 3620871 | 883.1.1.1 ↗ | a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › LBP_BPI_CETP | 0.65 | 58.0 | 4.26e-01 | 100.0% | 65.8% |
| 3581282 | 883.1.1.15 ↗ | a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › LBP_BPI_CETP+LBP_BPI_CETP_C | 0.64 | 56.0 | 3.52e-01 | 100.0% | 31.0% |
| 3517706 | 883.1.1.0 ↗ | a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like | 0.64 | 54.0 | 4.27e-01 | 96.5% | 82.1% |
| 3500429 | 883.1.1.2 ↗ | a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › LBP_BPI_CETP_C | 0.64 | 55.0 | 4.02e-01 | 97.6% | 60.8% |
| 3792778 | 883.1.1.2 ↗ | a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › LBP_BPI_CETP_C | 0.64 | 56.0 | 3.54e-01 | 100.0% | 30.0% |
| 3932580 | 883.1.1.1 ↗ | a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › LBP_BPI_CETP | 0.62 | 53.0 | 4.05e-01 | 98.8% | 74.4% |
| 3580808 | 883.1.1.2 ↗ | a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › LBP_BPI_CETP_C | 0.62 | 54.0 | 3.89e-01 | 100.0% | 58.5% |
| 4497770 | 883.1.1.15 ↗ | a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › LBP_BPI_CETP+LBP_BPI_CETP_C | 0.62 | 54.0 | 3.43e-01 | 100.0% | 31.9% |
| 3627567 | 883.1.1.15 ↗ | a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › LBP_BPI_CETP+LBP_BPI_CETP_C | 0.61 | 52.0 | 3.44e-01 | 100.0% | 93.7% |
| 3221148 | 883.1.1.2 ↗ | a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › LBP_BPI_CETP_C | 0.61 | 53.0 | 3.36e-01 | 100.0% | 30.3% |
| 139113 | 883.1.1.3 ↗ | a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › JHBP | 0.60 | 51.0 | 3.85e-01 | 98.8% | 81.9% |
| 3842458 | 883.1.1.1 ↗ | a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › LBP_BPI_CETP | 0.58 | 50.0 | 4.12e-01 | 100.0% | 80.6% |
| 3391001 | 71.1.1.0 ↗ | beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB | 0.58 | 44.0 | 3.32e-01 | 83.5% | 47.3% |
| 4647627 | 883.1.1.1 ↗ | a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › LBP_BPI_CETP | 0.57 | 49.0 | 3.78e-01 | 100.0% | 61.9% |
| 3875620 | 883.1.1.1 ↗ | a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › LBP_BPI_CETP | 0.57 | 48.0 | 3.75e-01 | 94.1% | 54.2% |
| 3773744 | 883.1.1.1 ↗ | a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › LBP_BPI_CETP | 0.57 | 50.0 | 4.08e-01 | 100.0% | 66.1% |
| 3446217 | 5.1.3.65 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › DUF295 | 0.57 | 43.0 | 2.95e-01 | 96.5% | 23.9% |
| 3564207 | 304.55.2.4 ↗ | a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Transposase IS200-like › NID | 0.57 | 45.0 | 3.98e-01 | 96.5% | 58.4% |
| 4642761 | 331.22.1.2 ↗ | a+b two layers › TBP-like › Outer membrane protein assembly factor BamC › Outer membrane protein assembly factor BamC › PF29358 | 0.57 | 45.0 | 3.46e-01 | 96.5% | 36.2% |
| 3577548 | 331.12.1.0 ↗ | a+b two layers › TBP-like › YugN-like › YugN-like | 0.56 | 40.0 | 3.67e-01 | 98.8% | 56.6% |
| 3541529 | 883.1.1.15 ↗ | a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › LBP_BPI_CETP+LBP_BPI_CETP_C | 0.55 | 47.0 | 3.08e-01 | 100.0% | 25.3% |
| 5045171 | 2484.1.1.59 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › NurA | 0.55 | 38.0 | 2.53e-01 | 80.0% | 17.0% |
| 2780879 | 1172.1.1.1 ↗ | beta barrels › UL131A-like › UL130 C-terminal domain › UL130 C-terminal domain › Gp_UL130 | 0.54 | 35.0 | 3.28e-01 | 89.4% | 50.5% |
| 3750494 | 883.1.1.0 ↗ | a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like | 0.54 | 48.0 | 3.68e-01 | 100.0% | 81.0% |
| 3967619 | 244.3.1.6 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › SufE/NifU › SufE/NifU › TSCPD | 0.54 | 46.0 | 4.20e-01 | 97.6% | 92.5% |
| 4998018 | 2003.1.1.22 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › GFO_IDH_MocA | 0.54 | 37.0 | 2.57e-01 | 72.9% | 90.6% |
| 3226630 | 11.10.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like | 0.53 | 39.0 | 3.23e-01 | 100.0% | 41.9% |
| 3495218 | 922.1.1.9 ↗ | few secondary structure elements › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP1_2 | 0.53 | 29.0 | 3.53e-01 | 80.0% | 90.0% |
| 4071803 | 304.112.1.0 ↗ | a+b two layers › Alpha-beta plaits › Argonaute, N-terminal domain › Argonaute, N-terminal domain | 0.51 | 43.0 | 3.49e-01 | 100.0% | 62.1% |
| 3485995 | 1.1.1.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease › Asp | 0.51 | 37.0 | 3.10e-01 | 98.8% | 44.8% |
| 5028422 | 2484.1.1.59 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › NurA | 0.50 | 39.0 | 2.84e-01 | 88.2% | 90.5% |
| 3525853 | 883.1.1.1 ↗ | a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › LBP_BPI_CETP | 0.50 | 40.0 | 3.42e-01 | 90.6% | 88.0% |